Rorug07G0242700

Protein NRT1 PTR FAMILY 5.10-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Forward (+)
22329603 .. 22329776
174 bp
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UTR
Exon/CDS
Intron
Rorug07G0242700.1

Sequence Viewer

Length: 174 bp
ATGATGCAATTTCGCTCGTCTCACATTTTTCGGGAAGGTAATAAAGTTGCAGATTTGTTAGCAAACTACGGTACTACTTCTACAGCCTTGGTTTGGTGGGATTTGATCCCTCTCTTCATTATGTCATCATGTACTAGTGACCGTTTAGGTCTTCCGCAATATCATTATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

57

Amino Acids

6.61

Weight (kDa)

7.94

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 168
AciI CCGC 1 cut(s) 155
AclWI GGATC 1 cut(s) 100
AfaI GTAC 2 cut(s) 73, 133
AfiI CCNNNNNNNGG 1 cut(s) 93
AhlI ACTAGT 1 cut(s) 134
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 1 cut(s) 100
BbsI GAAGAC 1 cut(s) 143
BcoDI GTCTC 1 cut(s) 24
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 81
BpiI GAAGAC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 93
BseDI CCNNGG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 1 cut(s) 24
BsmBI CGTCTC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 105
BspACI CCGC 1 cut(s) 155
BspPI GGATC 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 105
BssT1I CCWWGG 1 cut(s) 87
Bst4CI ACNGT 2 cut(s) 71, 143
Bst6I CTCTTC 1 cut(s) 119
BstKTI GATC 1 cut(s) 108
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 81
BstV2I GAAGAC 1 cut(s) 143
Csp6I GTAC 2 cut(s) 72, 132
CviAII CATG 1 cut(s) 129
CviJI RGCY 1 cut(s) 86
CviKI_1 RGCY 1 cut(s) 86
CviQI GTAC 2 cut(s) 72, 132
DpnI GATC 1 cut(s) 107
DpnII GATC 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 87
ErhI CCWWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 1 cut(s) 132
FaiI YATR 3 cut(s) 122, 130, 168
FatI CATG 1 cut(s) 128
FspBI CTAG 1 cut(s) 135
Hin1II CATG 1 cut(s) 132
Hpy188III TCNNGA 1 cut(s) 32
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 71, 143
HpyCH4V TGCA 2 cut(s) 7, 50
Hsp92II CATG 1 cut(s) 132
Kzo9I GATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 137
MalI GATC 1 cut(s) 107
MboI GATC 1 cut(s) 105
MboII GAAGA 2 cut(s) 106, 143
MluCI AATT 1 cut(s) 8
MnlI CCTC 1 cut(s) 120
NdeII GATC 1 cut(s) 105
NlaIII CATG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 137
PsiI TTATAA 1 cut(s) 168
RsaI GTAC 2 cut(s) 73, 133
RsaNI GTAC 2 cut(s) 72, 132
Sau3AI GATC 1 cut(s) 105
SetI ASST 2 cut(s) 40, 151
SfcI CTRYAG 1 cut(s) 81
SgeI CNNG 5 cut(s) 28, 44, 100, 141, 147
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 1 cut(s) 8
SsiI CCGC 1 cut(s) 155
SspMI CTAG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 71, 143
TasI AATT 1 cut(s) 8
TatI WGTACW 1 cut(s) 131
TseFI GTSAC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 1 cut(s) 106
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.