Rh3DG275500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000191
Physical Location & Seq
Forward (+)
27910847 .. 27911191
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG275500.1

Sequence Viewer

Length: 345 bp
ATGGATGATACCTGTGCTCTGTGCGGAGACACTTCAATGGGTCACATATGGGCCCTGGCCATCGACAGTTCTGCTCTACCTGCATTTTTCACCTCCGTTTCATCTGTGGAGATTCCCATTGCTGCCTCTGCAAGAGTGAATCTAAGATCATCTTCGTCACCAAGGTTAGGCATCAGTTGTAAACTTGTAATCCAAGGCTTGCCAAGCAACTTAATTCGTGTCCAAGCATGGAACTACCTACTACAGGCAGTTGTTAGAGCAGAACAAGCAATATATTCAGGAGCTGGCGACTGGAGAAATGCAGTGAGCTGCCGAAGAAATTGTTTTACACTTGAGACTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.27

Weight (kDa)

7.59

Isoelectric Point (pI)

52.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 1 cut(s) 24
AcoI YGGCCR 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 167, 244
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 284, 309
AluI AGCT 2 cut(s) 284, 309
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 21, 329
AlwNI CAGNNNCTG 1 cut(s) 284
AoxI GGCC 2 cut(s) 51, 57
ApaI GGGCCC 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 122, 309
AspS9I GGNCC 2 cut(s) 51, 52
AsuHPI GGTGA 2 cut(s) 82, 150
BaeGI GKGCMC 1 cut(s) 55
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 55
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 109, 296
BccI CCATC 1 cut(s) 68
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 21, 329
BfaI CTAG 1 cut(s) 343
BfmI CTRYAG 1 cut(s) 242
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 2 cut(s) 123, 310
BlsI GCNGC 2 cut(s) 124, 311
Bme1390I CCNGG 1 cut(s) 56
BmgT120I GGNCC 2 cut(s) 51, 52
BmiI GGNNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 180
BpmI CTGGAG 1 cut(s) 313
BsaJI CCNNGG 3 cut(s) 54, 161, 193
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 244
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 3 cut(s) 54, 161, 193
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 167, 244
BseMI GCAATG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 55
BseXI GCAGC 2 cut(s) 109, 296
BshFI GGCC 2 cut(s) 53, 59
BsiHKAI GWGCWC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 167, 244
BsmAI GTCTC 2 cut(s) 21, 329
BsnI GGCC 2 cut(s) 53, 59
Bsp120I GGGCCC 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 19, 55
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 1 cut(s) 24
BspANI GGCC 2 cut(s) 53, 59
BspLI GGNNCC 1 cut(s) 53
BspMI ACCTGC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 54, 161, 193
BssMI GATC 1 cut(s) 146
BssT1I CCWWGG 2 cut(s) 161, 193
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 200, 286
BstDEI CTNAG 1 cut(s) 143
BstENI CCTNNNNNAGG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 2 cut(s) 21, 329
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 4 cut(s) 80, 128, 204, 266
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 242
BstSLI GKGCMC 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 109, 296
BsuRI GGCC 2 cut(s) 53, 59
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 309
BtsIMutI CAGTG 1 cut(s) 309
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 2 cut(s) 200, 286
CaiI CAGNNNCTG 1 cut(s) 284
Cfr13I GGNCC 2 cut(s) 51, 52
CviAII CATG 1 cut(s) 228
CviJI RGCY 5 cut(s) 53, 59, 198, 284, 309
CviKI_1 RGCY 5 cut(s) 53, 59, 198, 284, 309
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 2 cut(s) 161, 193
Eco24I GRGCYC 1 cut(s) 55
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 54
EcoT14I CCWWGG 2 cut(s) 161, 193
EcoT38I GRGCYC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 161, 193
FaeI CATG 1 cut(s) 231
FaiI YATR 4 cut(s) 47, 49, 229, 274
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 1 cut(s) 227
FauNDI CATATG 1 cut(s) 47
Fnu4HI GCNGC 2 cut(s) 123, 310
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 55
Fsp4HI GCNGC 2 cut(s) 123, 310
FspBI CTAG 1 cut(s) 343
GluI GCNGC 2 cut(s) 123, 310
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 2 cut(s) 53, 59
Hin1II CATG 1 cut(s) 231
HinfI GANTC 2 cut(s) 112, 139
HphI GGTGA 2 cut(s) 82, 150
Hpy166II GTNNAC 1 cut(s) 182
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 83, 131, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 128, 204, 266
HpyF3I CTNAG 1 cut(s) 143
Hsp92II CATG 1 cut(s) 231
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 1 cut(s) 281
LpnPI CCDG 8 cut(s) 25, 41, 68, 93, 230, 264, 270, 277
Lsp1109I GCAGC 2 cut(s) 109, 296
LweI GCATC 1 cut(s) 180
MaeI CTAG 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 41, 156
MalI GATC 1 cut(s) 148
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 144, 327
MhlI GDGCHC 2 cut(s) 19, 55
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 2 cut(s) 213, 319
MluNI TGGCCA 1 cut(s) 59
MnlI CCTC 2 cut(s) 103, 136
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 80, 128, 204, 266
NdeI CATATG 1 cut(s) 47
NdeII GATC 1 cut(s) 146
NlaIII CATG 1 cut(s) 231
NlaIV GGNNCC 1 cut(s) 53
NmuCI GTSAC 2 cut(s) 41, 156
PfeI GAWTC 2 cut(s) 112, 139
PkrI GCNGC 2 cut(s) 124, 311
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 53
PspOMI GGGCCC 1 cut(s) 51
PspPI GGNCC 2 cut(s) 51, 52
PstNI CAGNNNCTG 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 35
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 2 cut(s) 123, 310
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 2 cut(s) 51, 52
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 19, 55
SetI ASST 7 cut(s) 14, 82, 95, 167, 240, 286, 311
SfaNI GCATC 1 cut(s) 180
SfcI CTRYAG 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 35
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 213, 319
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 2 cut(s) 161, 193
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 63
TasI AATT 2 cut(s) 213, 319
TfiI GAWTC 2 cut(s) 112, 139
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 309
TseFI GTSAC 2 cut(s) 41, 156
TseI GCWGC 2 cut(s) 122, 309
Tsp45I GTSAC 2 cut(s) 41, 156
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 242
XspI CTAG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.