Rmu_co8446845.1_g000001

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8446845.1
OG0000191
Physical Location & Seq
Reverse (-)
2 .. 1300
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8446845.1_g000001.1.cds

Sequence Viewer

Length: 1084 bp
atgctatgtttgatgacatcattcttgaaccgtactgaacagggtcttgccttgctgactctgtcagctgtgcttccgtcttctcagcttcaagtattattgttctttttctctctatatttagtagcagttgggcaaggtggacacaagccctgtgttcaggctttcggagcagatcagttcgatagacacgatccacaggagagcaaagccaaaagctcatttttcaattggtggtatctgagtatgtgtgtaggccccatgattacctttccagtattagcctacatacaggacaacctgagttggggtctgggttttggtcttccttgcattgtgatggtccttgcactgcttatcttccttcttggaacaagaaagtatcggtatagtatcaaaggggatgaggacagcccatttgtaagaattggcaaggtgtttgctgttgcattaaggaattggcgaactactccttcagcaatagcttcagaagaggaatctcgtggaaccctgtctcaccaaagttctcaacaattcaaattgctcaacaaagccttgcttgcaccggatgatttgaaggaaaatgggaaagtgtgtaccatcgctgaggttgaagaagcaaaggccgtccttaggctgtttcctatatgggttacatgcttgccatatgccattgtgtttgcacagtgctcgacttttttcactaagcaaggtgccaccatggacagaacaattgtgccaggttttgatataccagctgcttcacttcagtcgtttatcggcattgccactattatattcattcccatttacgatcgcatatttgttccaatagcaagagctttcactagagaaccctctggcattacaatgctacgaagaatcggaactgggatgtttatatctattatttccatggtagttgcagctttagttgagatgcaaagggtccaaactgctaaagactataatctggttgataagccaagtgccacagttccaatgagtgtttggtggttaggtcctcagtacttgttaattggactggccgatgttttcactatggttggtctgcaagagttct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

361

Amino Acids

40.16

Weight (kDa)

8.42

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 1047
AcuI CTGAAG 3 cut(s) 459, 471, 752
AfaI GTAC 3 cut(s) 34, 598, 1031
AfiI CCNNNNNNNGG 2 cut(s) 307, 633
AgsI TTSAA 6 cut(s) 28, 92, 229, 538, 577, 614
AjnI CCWGG 1 cut(s) 739
AluBI AGCT 7 cut(s) 68, 88, 219, 485, 758, 842, 929
AluI AGCT 7 cut(s) 68, 88, 219, 485, 758, 842, 929
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 1 cut(s) 188
AoxI GGCC 3 cut(s) 256, 624, 1047
ApeKI GCWGC 2 cut(s) 758, 926
ArsI GACNNNNNNTTYG 2 cut(s) 401, 433
AspS9I GGNCC 4 cut(s) 257, 343, 949, 1022
AsuHPI GGTGA 1 cut(s) 509
AvaII GGWCC 3 cut(s) 343, 949, 1022
AxyI CCTNAGG 1 cut(s) 632
BanI GGYRCC 1 cut(s) 713
BauI CACGAG 1 cut(s) 501
BbsI GAAGAC 2 cut(s) 72, 317
Bbv12I GWGCWC 1 cut(s) 692
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 2 cut(s) 745, 938
BccI CCATC 2 cut(s) 334, 608
BceAI ACGGC 1 cut(s) 611
BcgI CGANNNNNNTGC 2 cut(s) 672, 706
BciT130I CCWGG 1 cut(s) 741
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 1 cut(s) 849
BisI GCNGC 2 cut(s) 759, 927
BlsI GCNGC 2 cut(s) 760, 928
BmcAI AGTACT 1 cut(s) 1031
Bme1390I CCNGG 1 cut(s) 741
Bme18I GGWCC 3 cut(s) 343, 949, 1022
BmgT120I GGNCC 4 cut(s) 257, 343, 949, 1022
BmiI GGNNCC 4 cut(s) 259, 508, 715, 950
BmrFI CCNGG 1 cut(s) 741
BmrI ACTGGG 1 cut(s) 900
BmsI GCATC 1 cut(s) 930
BmuI ACTGGG 1 cut(s) 900
BpiI GAAGAC 2 cut(s) 72, 317
Bpu10I CCTNAGC 1 cut(s) 606
BsaJI CCNNGG 2 cut(s) 720, 915
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 633
Bse1I ACTGG 3 cut(s) 275, 895, 1050
Bse21I CCTNAGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 783
BseBI CCWGG 1 cut(s) 741
BseDI CCNNGG 2 cut(s) 720, 915
BseGI GGATG 3 cut(s) 409, 574, 900
BseLI CCNNNNNNNGG 2 cut(s) 307, 633
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 5 cut(s) 98, 233, 293, 597, 1040
BseNI ACTGG 3 cut(s) 275, 895, 1050
BseXI GCAGC 2 cut(s) 745, 938
Bsh1285I CGRYCG 1 cut(s) 817
BshFI GGCC 3 cut(s) 258, 626, 1049
BshNI GGYRCC 1 cut(s) 713
BsiEI CGRYCG 1 cut(s) 817
BsiHKAI GWGCWC 1 cut(s) 692
BsiSI CCGG 1 cut(s) 566
BslI CCNNNNNNNGG 2 cut(s) 307, 633
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 3 cut(s) 258, 626, 1049
Bsp1286I GDGCHC 1 cut(s) 692
Bsp143I GATC 3 cut(s) 175, 193, 814
Bsp19I CCATGG 2 cut(s) 720, 915
BspANI GGCC 3 cut(s) 258, 626, 1049
BspCNI CTCAG 5 cut(s) 97, 234, 294, 598, 1039
BspLI GGNNCC 4 cut(s) 259, 508, 715, 950
BspPI GGATC 1 cut(s) 188
BspT107I GGYRCC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 783
BsrI ACTGG 3 cut(s) 275, 895, 1050
BssECI CCNNGG 2 cut(s) 720, 915
BssMI GATC 3 cut(s) 175, 193, 814
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 2 cut(s) 720, 915
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 741
Bst4CI ACNGT 3 cut(s) 32, 687, 997
Bst6I CTCTTC 1 cut(s) 486
BstC8I GCNNGC 2 cut(s) 561, 662
BstDEI CTNAG 7 cut(s) 84, 242, 302, 606, 632, 705, 1026
BstDSI CCRYGG 2 cut(s) 720, 915
BstF5I GGATG 3 cut(s) 409, 574, 900
BstKTI GATC 3 cut(s) 178, 196, 817
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 3 cut(s) 175, 193, 814
BstMCI CGRYCG 1 cut(s) 817
BstMWI GCNNNNNNNGC 2 cut(s) 170, 560
BstNI CCWGG 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 660
BstSCI CCNGG 1 cut(s) 739
BstV1I GCAGC 2 cut(s) 745, 938
BstV2I GAAGAC 2 cut(s) 72, 317
Bsu36I CCTNAGG 1 cut(s) 632
BsuRI GGCC 3 cut(s) 258, 626, 1049
BtgI CCRYGG 2 cut(s) 720, 915
BtgZI GCGATG 1 cut(s) 586
BtsCI GGATG 3 cut(s) 409, 574, 900
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 350, 692
Cac8I GCNNGC 2 cut(s) 561, 662
Cfr13I GGNCC 4 cut(s) 257, 343, 949, 1022
Csp6I GTAC 3 cut(s) 33, 597, 1030
CviAII CATG 4 cut(s) 262, 657, 721, 916
CviQI GTAC 3 cut(s) 33, 597, 1030
DdeI CTNAG 7 cut(s) 84, 242, 302, 606, 632, 705, 1026
DpnI GATC 3 cut(s) 177, 195, 816
DpnII GATC 3 cut(s) 175, 193, 814
EaeI YGGCCR 1 cut(s) 1047
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco130I CCWWGG 2 cut(s) 720, 915
Eco47I GGWCC 3 cut(s) 343, 949, 1022
Eco57I CTGAAG 3 cut(s) 459, 471, 752
Eco81I CCTNAGG 1 cut(s) 632
EcoO109I RGGNCCY 2 cut(s) 257, 1022
EcoRII CCWGG 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 720, 915
ErhI CCWWGG 2 cut(s) 720, 915
FaeI CATG 4 cut(s) 265, 660, 724, 919
FalI AAGNNNNNCTT 2 cut(s) 543, 575
FatI CATG 4 cut(s) 261, 656, 720, 915
FauNDI CATATG 1 cut(s) 667
Fnu4HI GCNGC 2 cut(s) 759, 927
FokI GGATG 3 cut(s) 416, 581, 907
Fsp4HI GCNGC 2 cut(s) 759, 927
FspBI CTAG 1 cut(s) 849
GluI GCNGC 2 cut(s) 759, 927
HaeIII GGCC 3 cut(s) 258, 626, 1049
HapII CCGG 1 cut(s) 566
Hin1II CATG 4 cut(s) 265, 660, 724, 919
HinfI GANTC 3 cut(s) 58, 497, 882
HpaII CCGG 1 cut(s) 566
HphI GGTGA 1 cut(s) 509
Hpy166II GTNNAC 2 cut(s) 143, 597
Hpy188I TCNGA 4 cut(s) 170, 243, 490, 887
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 143, 597
HpyAV CCTTC 3 cut(s) 374, 483, 571
HpyCH4III ACNGT 3 cut(s) 32, 687, 997
HpyCH4V TGCA 8 cut(s) 333, 350, 449, 563, 683, 926, 943, 1075
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 560
HpyF3I CTNAG 7 cut(s) 84, 242, 302, 606, 632, 705, 1026
Hsp92II CATG 4 cut(s) 265, 660, 724, 919
Kzo9I GATC 3 cut(s) 175, 193, 814
LmnI GCTCC 1 cut(s) 170
Lsp1109I GCAGC 2 cut(s) 745, 938
LweI GCATC 1 cut(s) 930
MaeI CTAG 1 cut(s) 849
MaeIII GTNAC 1 cut(s) 652
MalI GATC 3 cut(s) 177, 195, 816
MboI GATC 3 cut(s) 175, 193, 814
MboII GAAGA 6 cut(s) 72, 317, 352, 503, 626, 891
MfeI CAATTG 2 cut(s) 229, 732
MhlI GDGCHC 1 cut(s) 692
MluCI AATT 7 cut(s) 229, 426, 457, 533, 539, 732, 1038
MlyI GAGTC 1 cut(s) 52
MnlI CCTC 5 cut(s) 400, 487, 601, 868, 1035
MseI TTAA 2 cut(s) 452, 1037
MslI CAYNNNNRTG 2 cut(s) 338, 869
MspA1I CMGCKG 2 cut(s) 68, 758
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 741
MunI CAATTG 2 cut(s) 229, 732
MvaI CCWGG 1 cut(s) 741
MwoI GCNNNNNNNGC 2 cut(s) 170, 560
NcoI CCATGG 2 cut(s) 720, 915
NdeI CATATG 1 cut(s) 667
NdeII GATC 3 cut(s) 175, 193, 814
NlaIII CATG 4 cut(s) 265, 660, 724, 919
NlaIV GGNNCC 4 cut(s) 259, 508, 715, 950
NspI RCATGY 1 cut(s) 660
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PfeI GAWTC 2 cut(s) 497, 882
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 760, 928
Ple19I CGATCG 1 cut(s) 817
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
PpuMI RGGWCCY 1 cut(s) 1022
Psp5II RGGWCCY 1 cut(s) 1022
Psp6I CCWGG 1 cut(s) 739
PspGI CCWGG 1 cut(s) 739
PspN4I GGNNCC 4 cut(s) 259, 508, 715, 950
PspPI GGNCC 4 cut(s) 257, 343, 949, 1022
PspPPI RGGWCCY 1 cut(s) 1022
PsyI GACNNNGTC 1 cut(s) 61
PvuI CGATCG 1 cut(s) 817
PvuII CAGCTG 2 cut(s) 68, 758
RsaI GTAC 3 cut(s) 34, 598, 1031
RsaNI GTAC 3 cut(s) 33, 597, 1030
RseI CAYNNNNRTG 2 cut(s) 338, 869
SaqAI TTAA 2 cut(s) 452, 1037
SatI GCNGC 2 cut(s) 759, 927
Sau3AI GATC 3 cut(s) 175, 193, 814
Sau96I GGNCC 4 cut(s) 257, 343, 949, 1022
ScaI AGTACT 1 cut(s) 1031
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 741
SduI GDGCHC 1 cut(s) 692
SfaNI GCATC 1 cut(s) 930
SinI GGWCC 3 cut(s) 343, 949, 1022
SmiMI CAYNNNNRTG 2 cut(s) 338, 869
Sse9I AATT 7 cut(s) 229, 426, 457, 533, 539, 732, 1038
SspMI CTAG 1 cut(s) 849
StyD4I CCNGG 1 cut(s) 739
StyI CCWWGG 2 cut(s) 720, 915
TaaI ACNGT 3 cut(s) 32, 687, 997
TaqI TCGA 2 cut(s) 183, 692
TasI AATT 7 cut(s) 229, 426, 457, 533, 539, 732, 1038
TatI WGTACW 1 cut(s) 1029
TfiI GAWTC 2 cut(s) 497, 882
Tru1I TTAA 2 cut(s) 452, 1037
Tru9I TTAA 2 cut(s) 452, 1037
TscAI CASTG 2 cut(s) 357, 692
TseI GCWGC 2 cut(s) 758, 926
TspDTI ATGAA 1 cut(s) 790
TspGWI ACGGA 1 cut(s) 66
TspRI CASTG 2 cut(s) 357, 692
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 3 cut(s) 343, 949, 1022
XceI RCATGY 1 cut(s) 660
XcmI CCANNNNNNNNNTGG 1 cut(s) 1008
XspI CTAG 1 cut(s) 849
ZrmI AGTACT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.