MD03G1076700.v1.1

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
6258512 .. 6259865
1354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1076700.v1.1.491

Sequence Viewer

Length: 366 bp
ATGGCAGAAGATGATATGCTCGCCAAAGCAGCACCACCAGAAGAAAAAGATGCGTACACAAAAGATGGCACAGTGGATTTCCGTGGAAACCCAGCGAAGAGAAATGCAACCGGAACCTGGAAAGCCTGCCCTTTTATTCTAGGGAATGAATGCTGTGAGAGGTTGGCATATTATGGGATGAGCTCTAATCTGGTGATTTATTTCAAGACTCAATTGAACCAGACGAGTGCTGTTGCTGCGAAAAATAACTCGAATTGGAGTGGAACTTGCTACCTTACTCCATTGCTTGGAGCTTTTCTGGCTGATGCCTATTTGGGAAGATACAAGACAATTGCCTCTTTCTCAATCATTTATGTCGTTGGATGA

Protein Analysis

122

Amino Acids

13.24

Weight (kDa)

7.59

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 287
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 117, 287
AgsI TTSAA 2 cut(s) 205, 217
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 2 cut(s) 183, 293
AluI AGCT 2 cut(s) 183, 293
Alw21I GWGCWC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 29, 236
AsuHPI GGTGA 1 cut(s) 205
BanII GRGCYC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 185
BbvI GCAGC 2 cut(s) 41, 223
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 1 cut(s) 118
BfaI CTAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 30, 237
BlsI GCNGC 2 cut(s) 31, 238
Bme1390I CCNGG 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 2 cut(s) 40, 295
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 287
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 183
BseLI CCNNNNNNNGG 2 cut(s) 117, 287
BseMI GCAATG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 41, 223
BseYI CCCAGC 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 1 cut(s) 111
BslI CCNNNNNNNGG 2 cut(s) 117, 287
BsmI GAATGC 1 cut(s) 155
Bsp1286I GDGCHC 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 82
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 73
Bst6I CTCTTC 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 21, 127
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 29, 236, 299
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 41, 223
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 21, 127
Csp6I GTAC 1 cut(s) 55
CviJI RGCY 4 cut(s) 125, 183, 293, 302
CviKI_1 RGCY 4 cut(s) 125, 183, 293, 302
CviQI GTAC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 185
Eco53kI GAGCTC 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 185
FaiI YATR 4 cut(s) 17, 169, 174, 354
Fnu4HI GCNGC 2 cut(s) 30, 237
FokI GGATG 1 cut(s) 190
FriOI GRGCYC 1 cut(s) 185
Fsp4HI GCNGC 2 cut(s) 30, 237
FspBI CTAG 1 cut(s) 140
GluI GCNGC 2 cut(s) 30, 237
GsaI CCCAGC 1 cut(s) 95
HapII CCGG 1 cut(s) 111
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 111
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4III ACNGT 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 236, 299
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 9 cut(s) 51, 103, 105, 124, 130, 139, 176, 233, 284
Lsp1109I GCAGC 2 cut(s) 41, 223
LweI GCATC 2 cut(s) 40, 295
MaeI CTAG 1 cut(s) 140
MboII GAAGA 4 cut(s) 20, 53, 109, 330
MfeI CAATTG 2 cut(s) 212, 330
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 3 cut(s) 212, 253, 330
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 2 cut(s) 153, 346
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 2 cut(s) 212, 330
Mva1269I GAATGC 1 cut(s) 155
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 3 cut(s) 29, 236, 299
NlaIV GGNNCC 1 cut(s) 115
PctI GAATGC 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 287
PkrI GCNGC 2 cut(s) 31, 238
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
Psp124BI GAGCTC 1 cut(s) 185
Psp6I CCWGG 1 cut(s) 116
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SacI GAGCTC 1 cut(s) 185
SatI GCNGC 2 cut(s) 30, 237
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 185
SetI ASST 5 cut(s) 119, 164, 185, 276, 295
SfaNI GCATC 2 cut(s) 40, 295
Sse9I AATT 3 cut(s) 212, 253, 330
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 73
TaqI TCGA 1 cut(s) 251
TasI AATT 3 cut(s) 212, 253, 330
TscAI CASTG 1 cut(s) 78
TseI GCWGC 2 cut(s) 29, 236
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 1 cut(s) 78
Van91I CCANNNNNTGG 1 cut(s) 287
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.