Rh7AG397100

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000191
Physical Location & Seq
Reverse (-)
52099126 .. 52102478
3353 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG397100.1

Sequence Viewer

Length: 429 bp
ATGGCTCCTAACACCCAAAACACCCCATTGCTAAATCACGACATTGAGGTTGCCGTTTCGGAATCCAAAGCCTCTTCCTCCCCAACCGCCGTCAGATCCTCCACCACCGGCGGCTGGCGGTCCGCCTCGTTTATAATAGGGGTGGGATTTGCGGAGAGGTTTGCATTCTATGGAGTCAGCTCGAACCTCATAACGTTCCTGAGTGGGCCATTGGGGGAGTCGACGGCGACGGCGGCGGTGAACGTGAACACGTGGTCAGGAACGGCGGCTTTACTTCCTATGTTGGGAGCCATTGTCGCCGATTCATATCTCGGTCGCTACCGTACCATCCTGCTTTCTACTCTGCTCTACATCTTGGTTCGTTCATCCTTCTCCCCAGAACAAATGATACAGCCTATTTTAAATTTCACTACGAGAGCATTACGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

142

Amino Acids

15.15

Weight (kDa)

9.39

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AccI GTMKAC 1 cut(s) 221
AciI CCGC 8 cut(s) 87, 111, 118, 123, 152, 233, 236, 266
AclI AACGTT 1 cut(s) 194
AclWI GGATC 1 cut(s) 90
AcsI RAATTY 1 cut(s) 403
AcvI CACGTG 1 cut(s) 252
AfaI GTAC 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 114, 284
AflIII ACRYGT 1 cut(s) 249
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
AlwI GGATC 1 cut(s) 90
AoxI GGCC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 403
AspS9I GGNCC 2 cut(s) 120, 206
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 252
BccI CCATC 1 cut(s) 335
BceAI ACGGC 5 cut(s) 38, 74, 240, 246, 279
BisI GCNGC 3 cut(s) 112, 234, 267
BlsI GCNGC 3 cut(s) 113, 235, 268
Bme18I GGWCC 1 cut(s) 120
BmgT120I GGNCC 2 cut(s) 120, 206
BmiI GGNNCC 2 cut(s) 6, 289
BsaAI YACGTR 1 cut(s) 252
BsaBI GATNNNNATC 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 284
Bse118I RCCGGY 1 cut(s) 107
Bse3DI GCAATG 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 306
BseGI GGATG 2 cut(s) 327, 365
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 114, 284
BseMI GCAATG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 191
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 1 cut(s) 208
BsiEI CGRYCG 1 cut(s) 316
BsiSI CCGG 1 cut(s) 108
BslI CCNNNNNNNGG 2 cut(s) 114, 284
BsmI GAATGC 1 cut(s) 164
BsnI GGCC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 95
BspACI CCGC 8 cut(s) 87, 111, 118, 123, 152, 233, 236, 266
BspANI GGCC 1 cut(s) 208
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 6, 289
BspPI GGATC 1 cut(s) 90
BsrDI GCAATG 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 107
BssAI RCCGGY 1 cut(s) 107
BssMI GATC 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 79
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 2 cut(s) 327, 365
BstKTI GATC 1 cut(s) 98
BstMBI GATC 1 cut(s) 95
BstMCI CGRYCG 1 cut(s) 316
BstMWI GCNNNNNNNGC 2 cut(s) 233, 296
BstX2I RGATCY 1 cut(s) 95
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 208
BtsCI GGATG 2 cut(s) 327, 365
Cac8I GCNNGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 107
Cfr13I GGNCC 2 cut(s) 120, 206
CpoI CGGWCCG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 324
CspI CGGWCCG 1 cut(s) 120
CviJI RGCY 8 cut(s) 5, 71, 114, 180, 208, 269, 290, 394
CviKI_1 RGCY 8 cut(s) 5, 71, 114, 180, 208, 269, 290, 394
CviQI GTAC 1 cut(s) 324
DdeI CTNAG 1 cut(s) 200
DpnI GATC 1 cut(s) 97
DpnII GATC 1 cut(s) 95
DraI TTTAAA 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 79
EarI CTCTTC 1 cut(s) 79
EciI GGCGGA 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 120
Eco72I CACGTG 1 cut(s) 252
FaiI YATR 5 cut(s) 134, 171, 191, 281, 307
FblI GTMKAC 1 cut(s) 221
Fnu4HI GCNGC 3 cut(s) 112, 234, 267
FokI GGATG 2 cut(s) 314, 352
Fsp4HI GCNGC 3 cut(s) 112, 234, 267
GluI GCNGC 3 cut(s) 112, 234, 267
HaeIII GGCC 1 cut(s) 208
HapII CCGG 1 cut(s) 108
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 62, 174, 218, 302
HpaII CCGG 1 cut(s) 108
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 3 cut(s) 222, 241, 247
Hpy188I TCNGA 2 cut(s) 61, 95
Hpy188III TCNNGA 3 cut(s) 38, 199, 258
Hpy8I GTNNAC 3 cut(s) 222, 241, 247
Hpy99I CGWCG 2 cut(s) 226, 232
HpyAV CCTTC 1 cut(s) 379
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 3 cut(s) 194, 243, 251
HpyCH4V TGCA 1 cut(s) 164
HpyF10VI GCNNNNNNNGC 2 cut(s) 233, 296
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 3 cut(s) 194, 243, 251
Kzo9I GATC 1 cut(s) 95
LmnI GCTCC 2 cut(s) 10, 287
LpnPI CCDG 6 cut(s) 100, 121, 212, 243, 344, 390
MaeII ACGT 3 cut(s) 194, 243, 251
MalI GATC 1 cut(s) 97
MboI GATC 1 cut(s) 95
MboII GAAGA 1 cut(s) 66
MflI RGATCY 1 cut(s) 95
MluCI AATT 1 cut(s) 403
MlyI GAGTC 2 cut(s) 183, 227
MnlI CCTC 7 cut(s) 40, 82, 88, 109, 136, 150, 197
MseI TTAA 1 cut(s) 401
MspI CCGG 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 164
MwoI GCNNNNNNNGC 2 cut(s) 233, 296
NdeII GATC 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 6, 289
PctI GAATGC 1 cut(s) 164
PfeI GAWTC 2 cut(s) 62, 302
PkrI GCNGC 3 cut(s) 113, 235, 268
PleI GAGTC 2 cut(s) 182, 226
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 2 cut(s) 182, 226
Ppu21I YACGTR 1 cut(s) 252
PsiI TTATAA 1 cut(s) 134
Psp1406I AACGTT 1 cut(s) 194
PspCI CACGTG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 6, 289
PspPI GGNCC 2 cut(s) 120, 206
PsrI GAACNNNNNNTAC 2 cut(s) 372, 404
PsuI RGATCY 1 cut(s) 95
RsaI GTAC 1 cut(s) 325
RsaNI GTAC 1 cut(s) 324
Rsr2I CGGWCCG 1 cut(s) 120
RsrII CGGWCCG 1 cut(s) 120
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 401
SatI GCNGC 3 cut(s) 112, 234, 267
Sau3AI GATC 1 cut(s) 95
Sau96I GGNCC 2 cut(s) 120, 206
SchI GAGTC 2 cut(s) 183, 227
SetI ASST 7 cut(s) 51, 161, 182, 189, 197, 246, 254
SgrAI CRCCGGYG 1 cut(s) 107
SinI GGWCC 1 cut(s) 120
Sse9I AATT 1 cut(s) 403
SsiI CCGC 8 cut(s) 87, 111, 118, 123, 152, 233, 236, 266
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 3 cut(s) 197, 246, 254
TaqI TCGA 2 cut(s) 182, 221
TaqII GACCGA 1 cut(s) 302
TasI AATT 1 cut(s) 403
TauI GCSGC 3 cut(s) 114, 236, 269
TfiI GAWTC 2 cut(s) 62, 302
Tru1I TTAA 1 cut(s) 401
Tru9I TTAA 1 cut(s) 401
TspDTI ATGAA 2 cut(s) 294, 354
VpaK11BI GGWCC 1 cut(s) 120
XapI RAATTY 1 cut(s) 403
XmiI GTMKAC 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.