Rorug07G0242900

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000191
Physical Location & Seq
Forward (+)
22418535 .. 22419164
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0242900.1

Sequence Viewer

Length: 369 bp
ATGGGGACGACAAGGGAAGCCAAAAAGAAACAGTATACAAATTCTTGTGTAAATGTACAAGTAGCTGTCTTCATTGTACATATTCACTGGGTGAATGTGACCCGGGTAAATGATCATGAAGGATTGGCCTGTTTGTTTGTTACAGAACCAAAGAAGAAGAGAGAAAGTTTAAACCACTTCATGGAAGTGAGCAAATTTTATGCAAGAAACTGGATGAATGTAGATGTTACAGGTGCGGCCGCAAAATTTGATCTGAGGATTGGATTATCCCAACTGAATGTTGACATTGTGCATCACATTCTGTCTTTGCCAACCCTACAAGAGGGAAAGGCAGAGACATTCATAAACTTTGTGGATGGATCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

122

Amino Acids

13.86

Weight (kDa)

8.62

Isoelectric Point (pI)

37.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 181
AccI GTMKAC 1 cut(s) 35
AciI CCGC 2 cut(s) 236, 240
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 237
AcsI RAATTY 3 cut(s) 40, 194, 245
AdeI CACNNNGTG 1 cut(s) 91
AfaI GTAC 2 cut(s) 57, 78
AfiI CCNNNNNNNGG 2 cut(s) 181, 322
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 367
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 2 cut(s) 126, 237
ApoI RAATTY 3 cut(s) 40, 194, 245
AsuC2I CCSGG 2 cut(s) 103, 104
AsuHPI GGTGA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 61
BccI CCATC 1 cut(s) 350
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 2 cut(s) 103, 104
BcoDI GTCTC 1 cut(s) 329
BisI GCNGC 2 cut(s) 237, 240
BlsI GCNGC 2 cut(s) 238, 241
Bme1390I CCNGG 2 cut(s) 103, 104
BmeT110I CYCGRG 1 cut(s) 102
BmrFI CCNGG 2 cut(s) 103, 104
BmrI ACTGGG 1 cut(s) 97
BmsI GCATC 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 61
BpuMI CCSGG 2 cut(s) 103, 104
BsaJI CCNNGG 1 cut(s) 102
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 322
Bse1I ACTGG 2 cut(s) 92, 215
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 2 cut(s) 219, 361
BseLI CCNNNNNNNGG 2 cut(s) 181, 322
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 92, 215
BseX3I CGGCCG 1 cut(s) 237
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 2 cut(s) 128, 239
BsiEI CGRYCG 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 181, 322
BsmAI GTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 19
BsnI GGCC 2 cut(s) 128, 239
BsoBI CYCGRG 1 cut(s) 102
Bsp1407I TGTACA 2 cut(s) 55, 76
Bsp143I GATC 3 cut(s) 112, 250, 359
BspACI CCGC 2 cut(s) 236, 240
BspANI GGCC 2 cut(s) 128, 239
BspCNI CTCAG 1 cut(s) 246
BspHI TCATGA 1 cut(s) 115
BspPI GGATC 1 cut(s) 367
BsrGI TGTACA 2 cut(s) 55, 76
BsrI ACTGG 2 cut(s) 92, 215
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 3 cut(s) 112, 250, 359
BssNAI GTATAC 1 cut(s) 36
Bst1107I GTATAC 1 cut(s) 36
Bst4CI ACNGT 1 cut(s) 33
Bst6I CTCTTC 1 cut(s) 152
BstAUI TGTACA 2 cut(s) 55, 76
BstDEI CTNAG 1 cut(s) 254
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 219, 361
BstKTI GATC 3 cut(s) 115, 253, 362
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 3 cut(s) 112, 250, 359
BstMCI CGRYCG 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 101, 102
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
BstZ17I GTATAC 1 cut(s) 36
BstZI CGGCCG 1 cut(s) 237
BsuRI GGCC 2 cut(s) 128, 239
BtsCI GGATG 2 cut(s) 219, 361
BtsIMutI CAGTG 1 cut(s) 85
CciI TCATGA 1 cut(s) 115
CciNI GCGGCCGC 1 cut(s) 237
Cfr9I CCCGGG 1 cut(s) 102
Csp6I GTAC 2 cut(s) 56, 77
CviAII CATG 2 cut(s) 116, 181
CviJI RGCY 4 cut(s) 20, 65, 128, 239
CviKI_1 RGCY 4 cut(s) 20, 65, 128, 239
CviQI GTAC 2 cut(s) 56, 77
DdeI CTNAG 1 cut(s) 254
DpnI GATC 3 cut(s) 114, 252, 361
DpnII GATC 3 cut(s) 112, 250, 359
DraI TTTAAA 1 cut(s) 171
DraIII CACNNNGTG 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 237
EagI CGGCCG 1 cut(s) 237
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
EclXI CGGCCG 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 102
EcoNI CCTNNNNNAGG 1 cut(s) 320
FaeI CATG 2 cut(s) 119, 184
FaiI YATR 6 cut(s) 36, 81, 117, 182, 201, 344
FaqI GGGAC 1 cut(s) 19
FatI CATG 2 cut(s) 115, 180
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 2 cut(s) 237, 240
FokI GGATG 1 cut(s) 226
Fsp4HI GCNGC 2 cut(s) 237, 240
GluI GCNGC 2 cut(s) 237, 240
HaeIII GGCC 2 cut(s) 128, 239
HapII CCGG 1 cut(s) 103
Hin1II CATG 2 cut(s) 119, 184
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 36, 283
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 2 cut(s) 36, 283
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 203, 292
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 2 cut(s) 119, 184
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 3 cut(s) 112, 250, 359
LpnPI CCDG 5 cut(s) 73, 116, 142, 196, 216
LweI GCATC 1 cut(s) 301
MaeIII GTNAC 3 cut(s) 97, 139, 226
MalI GATC 3 cut(s) 114, 252, 361
MboI GATC 3 cut(s) 112, 250, 359
MboII GAAGA 3 cut(s) 61, 166, 169
MflI RGATCY 1 cut(s) 359
MluCI AATT 3 cut(s) 40, 194, 245
MnlI CCTC 2 cut(s) 249, 316
MseI TTAA 2 cut(s) 170, 367
MslI CAYNNNNRTG 1 cut(s) 185
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 2 cut(s) 103, 104
MssI GTTTAAAC 1 cut(s) 171
NciI CCSGG 2 cut(s) 103, 104
NdeII GATC 3 cut(s) 112, 250, 359
NlaIII CATG 2 cut(s) 119, 184
NmuCI GTSAC 1 cut(s) 97
NotI GCGGCCGC 1 cut(s) 237
PagI TCATGA 1 cut(s) 115
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 2 cut(s) 238, 241
PmeI GTTTAAAC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 359
RsaI GTAC 2 cut(s) 57, 78
RsaNI GTAC 2 cut(s) 56, 77
RseI CAYNNNNRTG 1 cut(s) 185
SaqAI TTAA 2 cut(s) 170, 367
SatI GCNGC 2 cut(s) 237, 240
Sau3AI GATC 3 cut(s) 112, 250, 359
ScrFI CCNGG 2 cut(s) 103, 104
SetI ASST 2 cut(s) 67, 235
SfaNI GCATC 1 cut(s) 301
SmaI CCCGGG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 3 cut(s) 40, 194, 245
SsiI CCGC 2 cut(s) 236, 240
StyD4I CCNGG 2 cut(s) 101, 102
TaaI ACNGT 1 cut(s) 33
TasI AATT 3 cut(s) 40, 194, 245
TatI WGTACW 2 cut(s) 55, 76
TauI GCSGC 2 cut(s) 239, 242
Tru1I TTAA 2 cut(s) 170, 367
Tru9I TTAA 2 cut(s) 170, 367
TscAI CASTG 1 cut(s) 92
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 5 cut(s) 61, 132, 169, 230, 331
TspMI CCCGGG 1 cut(s) 102
TspRI CASTG 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 181
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 3 cut(s) 40, 194, 245
XmaI CCCGGG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.