RchiOBHm_Chr3g0482421

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
28517651 .. 28519619
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44729

Sequence Viewer

Length: 408 bp
ATGGGAATGATTCTGATTCTTCGGGCTCAGAAGCCGAGCACCGCAGGCAGCAGTACATTCAGCCCAGTTCTTACAACATCCCATAGCCTCAAAGTTACAGATGGGACAGTGGATTACAAAGGAAACCCAGCTAATAAAAAAGTCACAGAAACCTGGAAAGCCTGCCCTTTTATCTTAGGGAATGAATGCTGTGACAGATTGGCATACTATGGGATGAGCTCAAATCTGGTCATTTATTTCAAGCAACATCTGCACCAAAGCAGTGCTAAAGCAGCTAAAAGCAACTCAAATTGGAGTGGAACATGTTATCTCACTCCCTTACTTGGAGCATTTTTGGCTGATGCCTATTTGGAAGATATAAGATTTTGCCTCTTTCTCAATCATCTATGTCATTGTTTTCCGAAGTAA

Protein Analysis

135

Amino Acids

14.93

Weight (kDa)

8.86

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AfaI GTAC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 1 cut(s) 241
AjnI CCWGG 1 cut(s) 152
AluBI AGCT 3 cut(s) 131, 219, 275
AluI AGCT 3 cut(s) 131, 219, 275
Alw21I GWGCWC 2 cut(s) 41, 221
ApeKI GCWGC 2 cut(s) 48, 272
BanII GRGCYC 2 cut(s) 28, 221
Bbv12I GWGCWC 2 cut(s) 41, 221
BbvI GCAGC 2 cut(s) 60, 284
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 154
BisI GCNGC 2 cut(s) 49, 273
BlsI GCNGC 2 cut(s) 50, 274
Bme1390I CCNGG 1 cut(s) 154
BmrFI CCNGG 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 1 cut(s) 331
BmuI ACTGGG 1 cut(s) 59
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse1I ACTGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 154
BseGI GGATG 2 cut(s) 77, 219
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 2 cut(s) 60, 284
BseYI CCCAGC 1 cut(s) 127
BsgI GTGCAG 1 cut(s) 236
BsiHKAI GWGCWC 2 cut(s) 41, 221
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 1 cut(s) 323
BsmFI GGGAC 1 cut(s) 118
BsmI GAATGC 1 cut(s) 191
Bsp1286I GDGCHC 3 cut(s) 28, 41, 221
BspACI CCGC 1 cut(s) 42
BspCNI CTCAG 1 cut(s) 40
BsrI ACTGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 109
BstAPI GCANNNNNTGC 1 cut(s) 250
BstC8I GCNNGC 2 cut(s) 46, 163
BstDEI CTNAG 2 cut(s) 27, 175
BstF5I GGATG 2 cut(s) 77, 219
BstMWI GCNNNNNNNGC 4 cut(s) 45, 250, 272, 335
BstNI CCWGG 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 60, 284
BtsCI GGATG 2 cut(s) 77, 219
BtsI GCAGTG 1 cut(s) 268
BtsIMutI CAGTG 2 cut(s) 114, 268
Cac8I GCNNGC 2 cut(s) 46, 163
Csp6I GTAC 1 cut(s) 54
CviAII CATG 1 cut(s) 303
CviJI RGCY 9 cut(s) 26, 34, 63, 87, 131, 161, 219, 275, 338
CviKI_1 RGCY 9 cut(s) 26, 34, 63, 87, 131, 161, 219, 275, 338
CviQI GTAC 1 cut(s) 54
DdeI CTNAG 2 cut(s) 27, 175
Ecl136II GAGCTC 1 cut(s) 219
Eco24I GRGCYC 2 cut(s) 28, 221
Eco53kI GAGCTC 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 219
EcoRII CCWGG 1 cut(s) 152
EcoT38I GRGCYC 2 cut(s) 28, 221
FaeI CATG 1 cut(s) 306
FaiI YATR 6 cut(s) 84, 205, 210, 304, 359, 388
FaqI GGGAC 1 cut(s) 118
FatI CATG 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 49, 273
FokI GGATG 2 cut(s) 64, 226
FriOI GRGCYC 2 cut(s) 28, 221
Fsp4HI GCNGC 2 cut(s) 49, 273
GluI GCNGC 2 cut(s) 49, 273
GsaI CCCAGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 306
HinfI GANTC 2 cut(s) 10, 16
Hpy188I TCNGA 3 cut(s) 15, 30, 402
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 250, 272, 335
HpyF3I CTNAG 2 cut(s) 27, 175
Hsp92II CATG 1 cut(s) 306
LmnI GCTCC 1 cut(s) 326
LpnPI CCDG 7 cut(s) 30, 78, 139, 141, 166, 175, 212
Lsp1109I GCAGC 2 cut(s) 60, 284
LweI GCATC 1 cut(s) 331
MaeIII GTNAC 3 cut(s) 94, 142, 191
MboII GAAGA 2 cut(s) 11, 365
MhlI GDGCHC 3 cut(s) 28, 41, 221
MluCI AATT 1 cut(s) 289
MnlI CCTC 2 cut(s) 98, 380
MspR9I CCNGG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 191
MvaI CCWGG 1 cut(s) 154
MwoI GCNNNNNNNGC 4 cut(s) 45, 250, 272, 335
NlaIII CATG 1 cut(s) 306
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 2 cut(s) 142, 191
NspI RCATGY 1 cut(s) 306
PciI ACATGT 1 cut(s) 302
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 2 cut(s) 10, 16
PkrI GCNGC 2 cut(s) 50, 274
PscI ACATGT 1 cut(s) 302
Psp124BI GAGCTC 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 127
PspGI CCWGG 1 cut(s) 152
RsaI GTAC 1 cut(s) 55
RsaNI GTAC 1 cut(s) 54
SacI GAGCTC 1 cut(s) 221
SatI GCNGC 2 cut(s) 49, 273
ScrFI CCNGG 1 cut(s) 154
SduI GDGCHC 3 cut(s) 28, 41, 221
SetI ASST 4 cut(s) 133, 155, 221, 277
SfaNI GCATC 1 cut(s) 331
Sse9I AATT 1 cut(s) 289
SsiI CCGC 1 cut(s) 42
SstI GAGCTC 1 cut(s) 221
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 109
TasI AATT 1 cut(s) 289
TatI WGTACW 1 cut(s) 53
TfiI GAWTC 2 cut(s) 10, 16
TscAI CASTG 2 cut(s) 114, 268
TseFI GTSAC 2 cut(s) 142, 191
TseI GCWGC 2 cut(s) 48, 272
Tsp45I GTSAC 2 cut(s) 142, 191
TspDTI ATGAA 1 cut(s) 198
TspRI CASTG 2 cut(s) 114, 268
XceI RCATGY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.