Rorug03G0196300

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
17265890 .. 17266488
599 bp
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UTR
Exon/CDS
Intron
Rorug03G0196300.1

Sequence Viewer

Length: 258 bp
ATGGATCACCTCTGCAAAATTTCAGCCAATTTGGTGATCGTTAAGGCATCCAAAACTGCAATTTACACGAACGAACCGAATCTGTCGAACCGGAACCTTTTGGATGCCTTAATGATCACCAATTTGGCTGAAATTTTGCAGAGATATGCTATTGTGGAGGAATTGGCGAGGCTAGGTGTAGATGTCCATACTCGTGCTCGGAATGAAGTCCAACTCAATGAGCGGTTGAGTCAATGGAAGACAACGGGTTGTCATTAA

Protein Analysis

85

Amino Acids

9.64

Weight (kDa)

7.84

Isoelectric Point (pI)

23.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 223
AciI CCGC 1 cut(s) 223
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 18, 132
Alw21I GWGCWC 1 cut(s) 199
AlwI GGATC 1 cut(s) 12
ApoI RAATTY 2 cut(s) 18, 132
AsuHPI GGTGA 2 cut(s) 46, 109
BauI CACGAG 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 199
BclI TGATCA 1 cut(s) 114
BfaI CTAG 1 cut(s) 173
BmiI GGNNCC 1 cut(s) 95
BmsI GCATC 2 cut(s) 56, 94
BpiI GAAGAC 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 90
BseGI GGATG 2 cut(s) 47, 109
BsiHKAI GWGCWC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 3 cut(s) 4, 36, 114
BspACI CCGC 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 223
BssMI GATC 3 cut(s) 4, 36, 114
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
BstF5I GGATG 2 cut(s) 47, 109
BstKTI GATC 3 cut(s) 7, 39, 117
BstMBI GATC 3 cut(s) 4, 36, 114
BstV2I GAAGAC 1 cut(s) 245
BtsCI GGATG 2 cut(s) 47, 109
CviJI RGCY 3 cut(s) 26, 128, 172
CviKI_1 RGCY 3 cut(s) 26, 128, 172
DpnI GATC 3 cut(s) 6, 38, 116
DpnII GATC 3 cut(s) 4, 36, 114
FaiI YATR 2 cut(s) 147, 189
FbaI TGATCA 1 cut(s) 114
FokI GGATG 2 cut(s) 34, 116
FspBI CTAG 1 cut(s) 173
HapII CCGG 1 cut(s) 91
HinfI GANTC 2 cut(s) 79, 229
HpaII CCGG 1 cut(s) 91
HphI GGTGA 2 cut(s) 46, 109
Hpy188I TCNGA 1 cut(s) 201
HpyCH4V TGCA 3 cut(s) 15, 59, 139
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 3 cut(s) 4, 36, 114
LpnPI CCDG 1 cut(s) 104
LweI GCATC 2 cut(s) 56, 94
MaeI CTAG 1 cut(s) 173
MalI GATC 3 cut(s) 6, 38, 116
MbiI CCGCTC 1 cut(s) 223
MboI GATC 3 cut(s) 4, 36, 114
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 199
MluCI AATT 6 cut(s) 18, 28, 60, 121, 132, 161
MlyI GAGTC 1 cut(s) 238
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 3 cut(s) 20, 151, 162
MseI TTAA 3 cut(s) 42, 110, 256
MslI CAYNNNNRTG 1 cut(s) 192
MspI CCGG 1 cut(s) 91
NdeII GATC 3 cut(s) 4, 36, 114
NlaIV GGNNCC 1 cut(s) 95
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 1 cut(s) 79
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 3 cut(s) 42, 110, 256
Sau3AI GATC 3 cut(s) 4, 36, 114
SchI GAGTC 1 cut(s) 238
SduI GDGCHC 1 cut(s) 199
SetI ASST 3 cut(s) 12, 99, 178
SfaNI GCATC 2 cut(s) 56, 94
SgeI CNNG 7 cut(s) 79, 103, 180, 185, 204, 206, 210
SmiMI CAYNNNNRTG 1 cut(s) 192
Sse9I AATT 6 cut(s) 18, 28, 60, 121, 132, 161
SsiI CCGC 1 cut(s) 223
SspMI CTAG 1 cut(s) 173
TaqI TCGA 1 cut(s) 86
TasI AATT 6 cut(s) 18, 28, 60, 121, 132, 161
TfiI GAWTC 1 cut(s) 79
Tru1I TTAA 3 cut(s) 42, 110, 256
Tru9I TTAA 3 cut(s) 42, 110, 256
TspDTI ATGAA 1 cut(s) 219
XapI RAATTY 2 cut(s) 18, 132
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.