Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Forward (+)

49653428 .. 49656562

Gene Structure 3135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG297600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCAAAGGTAGAAGAGAAGGGCTCTGCATATGGAAGAGATGATCAGACACAAGACGGAACTGTGGATCTCAAAGGCAGACCTGTTCTGAGATCAAACACTGGCAGATGGACAGCTTGTTCCTTCATCGTAGAGTTGAGGGACCCCGAGGGAGAATTTGCCATGGAAACTTTGCCAAACAAAACTACTTCAGGTCTAGATCGCACAGTAGACTCAAAAACTTCACTTATAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0006810 GO:0006857 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009753 GO:0010033 GO:0010243 GO:0014070 GO:0015833 GO:0022857 GO:0033993 GO:0035672 GO:0035673 GO:0042221 GO:0042493 GO:0042538 GO:0042742 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0043200 GO:0043201 GO:0043207 GO:0046677 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0080052 GO:0080053 GO:0097305 GO:0098542 GO:1901698 GO:1901700 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

78

Amino Acids

8.57

Weight (kDa)

5.01

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	155
AcuI	CTGAAG	1 cut(s)	174
AloI	GAACNNNNNNTCC	2 cut(s)	103, 135
AluBI	AGCT	2 cut(s)	116, 234
AluI	AGCT	2 cut(s)	116, 234
AlwI	GGATC	1 cut(s)	75
Ama87I	CYCGRG	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	155
AspS9I	GGNCC	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	26
BccI	CCATC	1 cut(s)	102
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	1 cut(s)	197
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	2 cut(s)	143, 144
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaJI	CCNNGG	2 cut(s)	147, 162
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	147, 162
BseMII	CTCAG	1 cut(s)	80
BseNI	ACTGG	1 cut(s)	106
BsiHKCI	CYCGRG	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsoBI	CYCGRG	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	4 cut(s)	43, 67, 92, 199
Bsp19I	CCATGG	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	143, 144
BspPI	GGATC	1 cut(s)	75
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	2 cut(s)	147, 162
BssMI	GATC	4 cut(s)	43, 67, 92, 199
BssT1I	CCWWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	64, 208
Bst6I	CTCTTC	2 cut(s)	9, 31
BstDEI	CTNAG	1 cut(s)	89
BstDSI	CCRYGG	1 cut(s)	162
BstKTI	GATC	4 cut(s)	46, 70, 95, 202
BstMBI	GATC	4 cut(s)	43, 67, 92, 199
BstX2I	RGATCY	1 cut(s)	67
BstYI	RGATCY	1 cut(s)	67
BtgI	CCRYGG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	142
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	3 cut(s)	24, 116, 234
CviKI_1	RGCY	3 cut(s)	24, 116, 234
DdeI	CTNAG	1 cut(s)	89
DpnI	GATC	4 cut(s)	45, 69, 94, 201
DpnII	GATC	4 cut(s)	43, 67, 92, 199
Eam1104I	CTCTTC	2 cut(s)	9, 31
EarI	CTCTTC	2 cut(s)	9, 31
Eco130I	CCWWGG	1 cut(s)	162
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	162
FaeI	CATG	1 cut(s)	166
FaiI	YATR	4 cut(s)	31, 33, 164, 230
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	162
FauNDI	CATATG	1 cut(s)	31
FbaI	TGATCA	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	210
FriOI	GRGCYC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	197
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	48, 90
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	2 cut(s)	13, 133
HpyCH4III	ACNGT	2 cut(s)	64, 208
HpyCH4V	TGCA	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	166
KflI	GGGWCCC	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	4 cut(s)	43, 67, 92, 199
LpnPI	CCDG	3 cut(s)	87, 96, 177
MaeI	CTAG	1 cut(s)	197
MalI	GATC	4 cut(s)	45, 69, 94, 201
MboI	GATC	4 cut(s)	43, 67, 92, 199
MboII	GAAGA	2 cut(s)	26, 48
MflI	RGATCY	1 cut(s)	67
MhlI	GDGCHC	1 cut(s)	26
MluCI	AATT	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	132, 142
NcoI	CCATGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	31
NdeII	GATC	4 cut(s)	43, 67, 92, 199
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	143, 144
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PpuMI	RGGWCCY	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	143, 144
PspPI	GGNCC	1 cut(s)	142
PspPPI	RGGWCCY	1 cut(s)	142
PsuI	RGATCY	1 cut(s)	67
Sau3AI	GATC	4 cut(s)	43, 67, 92, 199
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	5 cut(s)	12, 85, 118, 196, 236
SgeI	CNNG	9 cut(s)	65, 95, 114, 129, 158, 160, 175, 204, 209
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	1 cut(s)	155
SspMI	CTAG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	162
TaaI	ACNGT	2 cut(s)	64, 208
TasI	AATT	1 cut(s)	155
TscAI	CASTG	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	115
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	155
XbaI	TCTAGA	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	210
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.