Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Forward (+)

28115463 .. 28118086

Gene Structure 2624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG283000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGAAGAACTCGATGTCGGATCGCAGTTTTTACATTGACAGTGAAGAAGAAGGTGATGAGGAGAAGGGAAACAAAAGCATAGAAATTGGGAAGGATTCTGAATTTTCGGGCTCAGAAGCCAAGCACCACTGGCAGCAGCAGATTAGCCCAGTTCTTACAACACCCAATGGCCTCAAAGTTACAGAAAAGAGAAGAAAAACAATGGATGATACCTGTGCTCTGTGCGGAGACACTTCAATGGGTCACATATGGACCCTGGCCATCGAGAGGTCTGCTCTACCTGCATTTTTCACCTCCGTTTCATCTGTGGCGATTCCCATTGCTGCCTCTGCATCAGTTGTAATCCAAGGCTTGCCAAGCAACTCAATTCGTGTCCAAGCATGGAACTACCTACTACAGGCAGTTGTTAGAGCAGAACAAGCAATATATTCAGGAGCTGGCAACTGTGGAGAAATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

153

Amino Acids

16.67

Weight (kDa)

5.17

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	289
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	101
AfiI	CCNNNNNNNGG	2 cut(s)	267, 397
AgsI	TTSAA	1 cut(s)	237
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	27
AlwNI	CAGNNNCTG	1 cut(s)	437
AoxI	GGCC	2 cut(s)	169, 258
ApeKI	GCWGC	3 cut(s)	133, 136, 323
ApoI	RAATTY	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	65, 283
AvaII	GGWCC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	260
BanII	GRGCYC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	220
BbvI	GCAGC	3 cut(s)	145, 148, 310
BccI	CCATC	1 cut(s)	269
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	3 cut(s)	134, 137, 324
BlsI	GCNGC	3 cut(s)	135, 138, 325
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	252
BmgT120I	GGNCC	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	254
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	259, 291
BsaJI	CCNNGG	2 cut(s)	255, 346
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 397
Bse1I	ACTGG	2 cut(s)	134, 149
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	255, 346
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	2 cut(s)	267, 397
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	2 cut(s)	134, 149
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	3 cut(s)	145, 148, 310
BshFI	GGCC	2 cut(s)	171, 260
BsiHKAI	GWGCWC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	267, 397
BsmAI	GTCTC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	171, 260
Bsp1286I	GDGCHC	2 cut(s)	113, 220
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	2 cut(s)	171, 260
BspCNI	CTCAG	1 cut(s)	125
BspLI	GGNNCC	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	134, 149
BssECI	CCNNGG	2 cut(s)	255, 346
BssMI	GATC	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	346
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	41, 446
BstC8I	GCNNGC	2 cut(s)	353, 439
BstDEI	CTNAG	1 cut(s)	112
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 281, 329, 357, 419
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	395
BstV1I	GCAGC	3 cut(s)	145, 148, 310
BsuRI	GGCC	2 cut(s)	171, 260
BtsCI	GGATG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	46, 127
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	353, 439
CaiI	CAGNNNCTG	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	252
CviAII	CATG	1 cut(s)	381
CviJI	RGCY	7 cut(s)	111, 119, 147, 171, 260, 351, 437
CviKI_1	RGCY	7 cut(s)	111, 119, 147, 171, 260, 351, 437
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	258
Eco130I	CCWWGG	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	252
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	346
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	1 cut(s)	346
FaeI	CATG	1 cut(s)	384
FaiI	YATR	5 cut(s)	80, 248, 250, 382, 427
FatI	CATG	1 cut(s)	380
FauNDI	CATATG	1 cut(s)	248
Fnu4HI	GCNGC	3 cut(s)	134, 137, 324
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	3 cut(s)	134, 137, 324
GluI	GCNGC	3 cut(s)	134, 137, 324
HaeIII	GGCC	2 cut(s)	171, 260
Hin1II	CATG	1 cut(s)	384
HinfI	GANTC	2 cut(s)	95, 313
HphI	GGTGA	2 cut(s)	65, 283
Hpy188I	TCNGA	3 cut(s)	19, 100, 115
Hpy188III	TCNNGA	2 cut(s)	265, 432
HpyAV	CCTTC	3 cut(s)	44, 58, 85
HpyCH4III	ACNGT	2 cut(s)	41, 446
HpyCH4V	TGCA	3 cut(s)	284, 332, 457
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 281, 329, 357, 419
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	384
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	434
LpnPI	CCDG	9 cut(s)	115, 162, 226, 242, 269, 294, 383, 417, 423
Lsp1109I	GCAGC	3 cut(s)	145, 148, 310
LweI	GCATC	1 cut(s)	341
MaeIII	GTNAC	2 cut(s)	178, 242
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	4 cut(s)	16, 56, 59, 204
MhlI	GDGCHC	2 cut(s)	113, 220
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	3 cut(s)	84, 101, 366
MluNI	TGGCCA	1 cut(s)	260
MnlI	CCTC	5 cut(s)	52, 182, 261, 304, 337
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MslI	CAYNNNNRTG	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	130, 281, 329, 357, 419
NdeI	CATATG	1 cut(s)	248
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	1 cut(s)	384
NlaIV	GGNNCC	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	95, 313
PkrI	GCNGC	3 cut(s)	135, 138, 325
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	254
PspPI	GGNCC	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	437
RseI	CAYNNNNRTG	1 cut(s)	236
SatI	GCNGC	3 cut(s)	134, 137, 324
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	252
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	113, 220
SetI	ASST	7 cut(s)	55, 215, 272, 283, 296, 393, 439
SfaNI	GCATC	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	395
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	236
Sse9I	AATT	3 cut(s)	84, 101, 366
SsiI	CCGC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	41, 446
TaqI	TCGA	2 cut(s)	11, 264
TasI	AATT	3 cut(s)	84, 101, 366
TfiI	GAWTC	2 cut(s)	95, 313
TscAI	CASTG	2 cut(s)	46, 134
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	3 cut(s)	133, 136, 323
Tsp45I	GTSAC	1 cut(s)	242
TspDTI	ATGAA	2 cut(s)	17, 291
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	46, 134
VpaK11BI	GGWCC	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.