MD08G1218300.v1.1

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000191
Physical Location & Seq
Reverse (-)
28077601 .. 28080578
2978 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1218300.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGTGGGACGGAACGGCGTCGTTGGTTACTTTACTCGGAGCCTTTGTCGCTGATTCTTTTCTTGGACGCTACCGCACTATCGTTTTTGCTTCTCTACTCTACATTTTGGGACTTGGCTTGTTGACCCTGTCCGCCGTGCTTCCTTCGTCTGATATCCAAGTAGTGTTCTTCTTCTCCCTATATCTAGTGGCTGCTGCACAAGGCGGACACAAGCCTTGCGTTCAGGCATTTGGAGCTGATCAGTTTGATGTGTCAGATCCAGAGGAGTGCAAAGCCAAAAGCTCGTTCTTCAATTGGTGGTATTTTGGTATATGTGCAGGTACCTCAATGACACTTACCGTATTGACCTACATATCGGTATGGTTTTGGTTTTGGAATTCCCTAACGTATCGGTATGGCTCTAAAGGGGATGAAGAAAGCCCATTTGTAAGAATTGGAAAGGTGTTCGTTGCTGCTTTAAGGAACTGGCGAACTACTCCTTTAGCAGTAACTTCTCAAGAGGAATCTCGCGGTACCTTGCCTCACGAGAGTTCTGAACAATTCAAGTTCCTCAATAAAGCGTTGCTTGCGCCAGATGATTTGAAGGAAAACAGAAGGGTGTGTACCATCGTTGGAACGGGGATGTTCATATCTATTATTTCCATGGTAATTGCAGCTCTAGCTGAGATGAAAAGGCTCAAAACTGCCAAAGACTATGGCCTGCTTGATACACCAAGTGCCACAGTTCCAATGAGCGTCTGGTGGTTGGTTCCTCAGTACTTGTTGGCCGGACTGGCTGATTTTTTCACGATGGTCGGTCTGCAAGAGTTTTTTTACGATCAGGTGCCAAATGAACTGAGAAGTGTAGGACTCGCCCTCTATCTCAGCATCTTCGGCGTGGGAAGCTTCCTAAGTAGCTTTCTTATTTCCGCCATTGATGACGTAACCAGTTTAGAAGGCGAAAGTAGCTGGTTTTCGAATAATCTTAACCGTGCACATCTTGATTACTTCTATTGTCTACTTGGTGGAATCAGTGTGGTACAATTGCTTATCTACCTCTACTTTGCAAAATCGTACAGTTACAAATCCCAAGCCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

360

Amino Acids

40.06

Weight (kDa)

5.31

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 24 - 121 2.8e-22 POT family
PTR2 PF00854 204 - 317 1.2e-19 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 308
Acc65I GGTACC 2 cut(s) 320, 512
AccB1I GGYRCC 3 cut(s) 320, 512, 823
AccI GTMKAC 1 cut(s) 997
AccII CGCG 1 cut(s) 510
AciI CCGC 5 cut(s) 73, 132, 204, 510, 909
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 716
AfaI GTAC 6 cut(s) 322, 514, 604, 758, 1020, 1055
AgsI TTSAA 3 cut(s) 292, 544, 583
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AluBI AGCT 7 cut(s) 236, 282, 656, 662, 885, 897, 948
AluI AGCT 7 cut(s) 236, 282, 656, 662, 885, 897, 948
Alw21I GWGCWC 1 cut(s) 976
Alw44I GTGCAC 1 cut(s) 972
AlwI GGATC 1 cut(s) 251
AoxI GGCC 2 cut(s) 697, 765
ApaLI GTGCAC 1 cut(s) 972
ApeKI GCWGC 4 cut(s) 191, 194, 452, 653
ApoI RAATTY 1 cut(s) 376
Asp718I GGTACC 2 cut(s) 320, 512
AspLEI GCGC 1 cut(s) 571
AsuII TTCGAA 1 cut(s) 956
BaeGI GKGCMC 1 cut(s) 976
BanI GGYRCC 3 cut(s) 320, 512, 823
BarI GAAGNNNNNNTAC 2 cut(s) 586, 618
BauI CACGAG 1 cut(s) 524
Bbv12I GWGCWC 1 cut(s) 976
BbvI GCAGC 4 cut(s) 178, 181, 439, 665
BccI CCATC 2 cut(s) 614, 784
BceAI ACGGC 2 cut(s) 30, 119
BclI TGATCA 1 cut(s) 238
BfaI CTAG 2 cut(s) 185, 659
BfuAI ACCTGC 1 cut(s) 308
BglI GCCNNNNNGGC 1 cut(s) 773
BisI GCNGC 4 cut(s) 192, 195, 453, 654
BlsI GCNGC 4 cut(s) 193, 196, 454, 655
BmcAI AGTACT 1 cut(s) 758
BmiI GGNNCC 5 cut(s) 40, 322, 514, 750, 825
BmsI GCATC 1 cut(s) 876
Bpu14I TTCGAA 1 cut(s) 956
BpuEI CTTGAG 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 642
BsaXI ACNNNNNCTCC 2 cut(s) 30, 60
Bse1I ACTGG 3 cut(s) 470, 777, 927
BseDI CCNNGG 1 cut(s) 642
BseGI GGATG 2 cut(s) 415, 627
BseMII CTCAG 4 cut(s) 654, 767, 827, 877
BseNI ACTGG 3 cut(s) 470, 777, 927
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 976
BseXI GCAGC 4 cut(s) 178, 181, 439, 665
BsgI GTGCAG 2 cut(s) 180, 336
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 2 cut(s) 699, 767
BshNI GGYRCC 3 cut(s) 320, 512, 823
BsiHKAI GWGCWC 1 cut(s) 976
BsiSI CCGG 1 cut(s) 768
BslFI GGGAC 2 cut(s) 20, 123
BsmFI GGGAC 2 cut(s) 20, 123
BsnI GGCC 2 cut(s) 699, 767
Bsp119I TTCGAA 1 cut(s) 956
Bsp1286I GDGCHC 1 cut(s) 976
Bsp143I GATC 3 cut(s) 238, 256, 817
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 5 cut(s) 73, 132, 204, 510, 909
BspANI GGCC 2 cut(s) 699, 767
BspCNI CTCAG 4 cut(s) 655, 766, 828, 876
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 5 cut(s) 40, 322, 514, 750, 825
BspMI ACCTGC 1 cut(s) 308
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 956
BspT107I GGYRCC 3 cut(s) 320, 512, 823
BsrI ACTGG 3 cut(s) 470, 777, 927
BssECI CCNNGG 1 cut(s) 642
BssMI GATC 3 cut(s) 238, 256, 817
BssNI GRCGYC 1 cut(s) 17
BssSI CACGAG 1 cut(s) 524
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 524
Bst4CI ACNGT 4 cut(s) 340, 724, 971, 1058
BstACI GRCGYC 1 cut(s) 17
BstBI TTCGAA 1 cut(s) 956
BstC8I GCNNGC 2 cut(s) 567, 701
BstDEI CTNAG 5 cut(s) 663, 753, 836, 863, 890
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 2 cut(s) 415, 627
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 1 cut(s) 571
BstKTI GATC 3 cut(s) 241, 259, 820
BstMBI GATC 3 cut(s) 238, 256, 817
BstMWI GCNNNNNNNGC 8 cut(s) 47, 233, 566, 659, 773, 873, 882, 945
BstSLI GKGCMC 1 cut(s) 976
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 4 cut(s) 178, 181, 439, 665
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 2 cut(s) 699, 767
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 2 cut(s) 415, 627
BtsIMutI CAGTG 1 cut(s) 1018
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 2 cut(s) 567, 701
CfoI GCGC 1 cut(s) 571
CseI GACGC 3 cut(s) 6, 75, 724
Csp6I GTAC 6 cut(s) 321, 513, 603, 757, 1019, 1054
CviAII CATG 1 cut(s) 643
CviQI GTAC 6 cut(s) 321, 513, 603, 757, 1019, 1054
DdeI CTNAG 5 cut(s) 663, 753, 836, 863, 890
DpnI GATC 3 cut(s) 240, 258, 819
DpnII GATC 3 cut(s) 238, 256, 817
DraIII CACNNNGTG 1 cut(s) 716
EaeI YGGCCR 1 cut(s) 765
EciI GGCGGA 3 cut(s) 121, 219, 898
Eco130I CCWWGG 1 cut(s) 642
Eco32I GATATC 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 376
EcoRV GATATC 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 642
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 1 cut(s) 646
FaiI YATR 9 cut(s) 181, 311, 313, 353, 361, 396, 629, 644, 696
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 2 cut(s) 20, 123
FatI CATG 1 cut(s) 642
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 997
Fnu4HI GCNGC 4 cut(s) 192, 195, 453, 654
FokI GGATG 2 cut(s) 422, 634
Fsp4HI GCNGC 4 cut(s) 192, 195, 453, 654
FspBI CTAG 2 cut(s) 185, 659
GlaI GCGC 1 cut(s) 570
GluI GCNGC 4 cut(s) 192, 195, 453, 654
HaeIII GGCC 2 cut(s) 699, 767
HapII CCGG 1 cut(s) 768
HgaI GACGC 3 cut(s) 6, 75, 724
HhaI GCGC 1 cut(s) 571
Hin1I GRCGYC 1 cut(s) 17
Hin1II CATG 1 cut(s) 646
Hin6I GCGC 1 cut(s) 569
HinP1I GCGC 1 cut(s) 569
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 883
HinfI GANTC 4 cut(s) 53, 503, 849, 1008
HpaII CCGG 1 cut(s) 768
Hpy166II GTNNAC 4 cut(s) 123, 603, 974, 998
Hpy188I TCNGA 4 cut(s) 38, 151, 256, 535
Hpy188III TCNNGA 5 cut(s) 260, 497, 524, 787, 980
Hpy8I GTNNAC 4 cut(s) 123, 603, 974, 998
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 153, 577, 588, 929
HpyCH4III ACNGT 4 cut(s) 340, 724, 971, 1058
HpyCH4IV ACGT 2 cut(s) 386, 921
HpyCH4V TGCA 7 cut(s) 197, 270, 317, 653, 802, 974, 1046
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 233, 566, 659, 773, 873, 882, 945
HpyF3I CTNAG 5 cut(s) 663, 753, 836, 863, 890
HpySE526I ACGT 2 cut(s) 386, 921
Hsp92I GRCGYC 1 cut(s) 17
Hsp92II CATG 1 cut(s) 646
HspAI GCGC 1 cut(s) 569
KpnI GGTACC 2 cut(s) 324, 516
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 3 cut(s) 238, 256, 817
LmnI GCTCC 2 cut(s) 38, 233
Lsp1109I GCAGC 4 cut(s) 178, 181, 439, 665
LweI GCATC 1 cut(s) 876
MaeI CTAG 2 cut(s) 185, 659
MaeII ACGT 2 cut(s) 386, 921
MaeIII GTNAC 4 cut(s) 25, 487, 922, 1058
MalI GATC 3 cut(s) 240, 258, 819
MboI GATC 3 cut(s) 238, 256, 817
MboII GAAGA 5 cut(s) 160, 163, 280, 425, 862
MfeI CAATTG 2 cut(s) 292, 1022
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 976
MluCI AATT 6 cut(s) 292, 376, 432, 539, 648, 1022
MlyI GAGTC 1 cut(s) 843
MmeI TCCRAC 1 cut(s) 592
MnlI CCTC 8 cut(s) 256, 334, 493, 531, 560, 762, 866, 1046
MseI TTAA 2 cut(s) 458, 966
MspI CCGG 1 cut(s) 768
MunI CAATTG 2 cut(s) 292, 1022
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 8 cut(s) 47, 233, 566, 659, 773, 873, 882, 945
NcoI CCATGG 1 cut(s) 642
NdeII GATC 3 cut(s) 238, 256, 817
NlaIII CATG 1 cut(s) 646
NlaIV GGNNCC 5 cut(s) 40, 322, 514, 750, 825
NspV TTCGAA 1 cut(s) 956
PfeI GAWTC 3 cut(s) 53, 503, 1008
PflFI GACNNNGTC 1 cut(s) 127
PkrI GCNGC 4 cut(s) 193, 196, 454, 655
PleI GAGTC 1 cut(s) 843
PpsI GAGTC 1 cut(s) 843
PspN4I GGNNCC 5 cut(s) 40, 322, 514, 750, 825
PsuI RGATCY 1 cut(s) 256
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 6 cut(s) 322, 514, 604, 758, 1020, 1055
RsaNI GTAC 6 cut(s) 321, 513, 603, 757, 1019, 1054
SaqAI TTAA 2 cut(s) 458, 966
SatI GCNGC 4 cut(s) 192, 195, 453, 654
Sau3AI GATC 3 cut(s) 238, 256, 817
ScaI AGTACT 1 cut(s) 758
SchI GAGTC 1 cut(s) 843
SduI GDGCHC 1 cut(s) 976
SfaNI GCATC 1 cut(s) 876
SfuI TTCGAA 1 cut(s) 956
SmlI CTYRAG 1 cut(s) 495
SmoI CTYRAG 1 cut(s) 495
Sse9I AATT 6 cut(s) 292, 376, 432, 539, 648, 1022
SsiI CCGC 5 cut(s) 73, 132, 204, 510, 909
SspMI CTAG 2 cut(s) 185, 659
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 4 cut(s) 340, 724, 971, 1058
TaiI ACGT 2 cut(s) 389, 924
TaqI TCGA 1 cut(s) 956
TaqII GACCGA 1 cut(s) 785
TasI AATT 6 cut(s) 292, 376, 432, 539, 648, 1022
TatI WGTACW 1 cut(s) 756
TfiI GAWTC 3 cut(s) 53, 503, 1008
Tru1I TTAA 2 cut(s) 458, 966
Tru9I TTAA 2 cut(s) 458, 966
TscAI CASTG 1 cut(s) 1018
TseI GCWGC 4 cut(s) 191, 194, 452, 653
TspDTI ATGAA 4 cut(s) 426, 616, 683, 846
TspGWI ACGGA 1 cut(s) 24
TspRI CASTG 1 cut(s) 1018
Tth111I GACNNNGTC 1 cut(s) 127
VneI GTGCAC 1 cut(s) 972
XapI RAATTY 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 735
XmiI GTMKAC 1 cut(s) 997
XspI CTAG 2 cut(s) 185, 659
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.