Rmu_sc0005026.1_g000013

Protein NRT1 PTR FAMILY 5.10-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005026.1
Physical Location & Seq
Forward (+)
42274 .. 42705
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005026.1_g000013.1.cds

Sequence Viewer

Length: 432 bp
atgatgatcatacccatttatgaccgcatttttgttccagtggcaagagctttcaccagagaaccctctggcattacaatgctacaaagaattggaactgggatgtttttctctatcatatctatggtcgttgcagctttagttgagatgaaaaggctccaaattgccaaagattatgatctggttgatctgccaagtgccacaattccaatgagtatttggtggttggttcctcagtactttctgtatggactagccgatgttttcaccatggttggtctacaagagttcttctatgatcaggtaccaaatgaattaagaagcataggacttgccctctacctcagtatatttggtgtgggatgctttctgagcagctttcttatctgtattattgaggaagcaaccagttggggaggccacactagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

143

Amino Acids

16.13

Weight (kDa)

4.75

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 280
AciI CCGC 1 cut(s) 25
AfaI GTAC 2 cut(s) 239, 306
AluBI AGCT 4 cut(s) 50, 137, 378, 429
AluI AGCT 4 cut(s) 50, 137, 378, 429
AoxI GGCC 1 cut(s) 418
ApeKI GCWGC 2 cut(s) 134, 375
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp718I GGTACC 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 46, 259
BanI GGYRCC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 146, 387
BclI TGATCA 2 cut(s) 6, 298
BfaI CTAG 2 cut(s) 254, 426
BisI GCNGC 2 cut(s) 135, 376
BlsI GCNGC 2 cut(s) 136, 377
BmcAI AGTACT 1 cut(s) 239
BmiI GGNNCC 3 cut(s) 158, 231, 306
BmrI ACTGGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 353
BmuI ACTGGG 1 cut(s) 108
BsaBI GATNNNNATC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 270
Bse1I ACTGG 3 cut(s) 38, 103, 408
Bse8I GATNNNNATC 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 2 cut(s) 108, 368
BseJI GATNNNNATC 1 cut(s) 177
BseMII CTCAG 3 cut(s) 248, 358, 362
BseNI ACTGG 3 cut(s) 38, 103, 408
BseXI GCAGC 2 cut(s) 146, 387
BshFI GGCC 1 cut(s) 420
BshNI GGYRCC 1 cut(s) 304
BsnI GGCC 1 cut(s) 420
Bsp143I GATC 4 cut(s) 6, 178, 187, 298
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 3 cut(s) 247, 357, 363
BspLI GGNNCC 3 cut(s) 158, 231, 306
BspT107I GGYRCC 1 cut(s) 304
BsrI ACTGG 3 cut(s) 38, 103, 408
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 4 cut(s) 6, 178, 187, 298
BssT1I CCWWGG 1 cut(s) 270
BstDEI CTNAG 3 cut(s) 234, 344, 371
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 2 cut(s) 108, 368
BstKTI GATC 4 cut(s) 9, 181, 190, 301
BstMBI GATC 4 cut(s) 6, 178, 187, 298
BstMWI GCNNNNNNNGC 2 cut(s) 372, 426
BstV1I GCAGC 2 cut(s) 146, 387
BsuRI GGCC 1 cut(s) 420
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 2 cut(s) 108, 368
BtsIMutI CAGTG 1 cut(s) 45
Csp6I GTAC 2 cut(s) 238, 305
CviAII CATG 1 cut(s) 271
CviJI RGCY 7 cut(s) 50, 137, 157, 257, 378, 420, 429
CviKI_1 RGCY 7 cut(s) 50, 137, 157, 257, 378, 420, 429
CviQI GTAC 2 cut(s) 238, 305
DdeI CTNAG 3 cut(s) 234, 344, 371
DpnI GATC 4 cut(s) 8, 180, 189, 300
DpnII GATC 4 cut(s) 6, 178, 187, 298
Eco130I CCWWGG 1 cut(s) 270
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 274
FatI CATG 1 cut(s) 270
FbaI TGATCA 2 cut(s) 6, 298
FblI GTMKAC 1 cut(s) 280
Fnu4HI GCNGC 2 cut(s) 135, 376
FokI GGATG 2 cut(s) 115, 375
Fsp4HI GCNGC 2 cut(s) 135, 376
FspBI CTAG 2 cut(s) 254, 426
GluI GCNGC 2 cut(s) 135, 376
HaeIII GGCC 1 cut(s) 420
Hin1II CATG 1 cut(s) 274
HphI GGTGA 2 cut(s) 46, 259
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 372
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 134
HpyF10VI GCNNNNNNNGC 2 cut(s) 372, 426
HpyF3I CTNAG 3 cut(s) 234, 344, 371
Hsp92II CATG 1 cut(s) 274
KpnI GGTACC 1 cut(s) 308
Ksp22I TGATCA 2 cut(s) 6, 298
Kzo9I GATC 4 cut(s) 6, 178, 187, 298
LmnI GCTCC 1 cut(s) 162
LpnPI CCDG 7 cut(s) 51, 54, 70, 84, 167, 287, 421
Lsp1109I GCAGC 2 cut(s) 146, 387
LweI GCATC 1 cut(s) 353
MaeI CTAG 2 cut(s) 254, 426
MalI GATC 4 cut(s) 8, 180, 189, 300
MboI GATC 4 cut(s) 6, 178, 187, 298
MboII GAAGA 1 cut(s) 283
MluCI AATT 4 cut(s) 90, 162, 204, 314
MnlI CCTC 6 cut(s) 76, 243, 347, 353, 391, 410
MseI TTAA 1 cut(s) 317
MslI CAYNNNNRTG 2 cut(s) 77, 122
MwoI GCNNNNNNNGC 2 cut(s) 372, 426
NcoI CCATGG 1 cut(s) 270
NdeII GATC 4 cut(s) 6, 178, 187, 298
NlaIII CATG 1 cut(s) 274
NlaIV GGNNCC 3 cut(s) 158, 231, 306
PkrI GCNGC 2 cut(s) 136, 377
PspN4I GGNNCC 3 cut(s) 158, 231, 306
RsaI GTAC 2 cut(s) 239, 306
RsaNI GTAC 2 cut(s) 238, 305
RseI CAYNNNNRTG 2 cut(s) 77, 122
SaqAI TTAA 1 cut(s) 317
SatI GCNGC 2 cut(s) 135, 376
Sau3AI GATC 4 cut(s) 6, 178, 187, 298
ScaI AGTACT 1 cut(s) 239
SetI ASST 6 cut(s) 52, 139, 306, 345, 380, 431
SfaNI GCATC 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 77, 122
Sse9I AATT 4 cut(s) 90, 162, 204, 314
SsiI CCGC 1 cut(s) 25
SspMI CTAG 2 cut(s) 254, 426
StyI CCWWGG 1 cut(s) 270
TasI AATT 4 cut(s) 90, 162, 204, 314
TatI WGTACW 1 cut(s) 237
Tru1I TTAA 1 cut(s) 317
Tru9I TTAA 1 cut(s) 317
TscAI CASTG 1 cut(s) 45
TseI GCWGC 2 cut(s) 134, 375
TspDTI ATGAA 2 cut(s) 164, 327
TspRI CASTG 1 cut(s) 45
XcmI CCANNNNNNNNNTGG 1 cut(s) 216
XmiI GTMKAC 1 cut(s) 280
XspI CTAG 2 cut(s) 254, 426
ZrmI AGTACT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.