Rmu_sc0000883.1_g000015

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000883.1
OG0000191
Physical Location & Seq
Forward (+)
65796 .. 68170
2375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000883.1_g000015.1.cds

Sequence Viewer

Length: 1107 bp
atggccaactcctactacgaatctccggccacccaaactccactactactcgacgatgacgacgacgtggtggaggccgccgttgactacgaaggacacccggtcctcaggtccacctcaggcggttggcgttccgcctcattcataataggtgtggagattgcggagagggtcgcctactatggtattgcctccaaccttatctcctatctgacagggcctctgggtcagtcaacggccacggcggctcaaaatgtcaacgtttgggacggaacggcgtcgttgctcactttgtttggagcgttcttggccgattcttacctcggacgctaccgcaccatcgttgttgcttctctcctctacattttgggacttggcttgttgaccctctcggccttgcttccttttctaagtgcttctgactgtgaaacaaccaatcagtccacatcatgttcttctaggcttcaagaattgttgttcttcttctctatatatctagtagctgtggggcaaggtggacacaagccttgcgttcaggcttttggagctgatcagtttgatggacaagatccagatgaatgcaaagccaaaagttcattcttcaattggtggtattttggtatatgtgcaggtcctttgtgtacattttccttattagcctacatacaggacaacctgagctggggtcttggttttggaattccttgtattgtgatggtcctcgcattgtctattttccttcttggaactagaacttaccggtatagcgtcaaaggggatgaggaaagtccgtttgtgagaattggtaaggtgtttgttgtatcattaaggaattggcgaacatgttcttcagcaatagcttctgaagaggaatctcgaggaattctgcctcaccaaagttctgaacaattcaagttcctcaacaaagccttgcttgctccagatgatttgaagggaaatgggaaggtgtgtaccgtcctcgaggttgaagaagcaaaaagcattcttcggctatttccaatatgggctacatgcttggcatatgctattgtgtttgcacagttttcaaccttcttcaccaagcaaggtgctaccatgaattattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

368

Amino Acids

40.26

Weight (kDa)

4.85

Isoelectric Point (pI)

36.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 980
Acc36I ACCTGC 1 cut(s) 620
AciI CCGC 6 cut(s) 78, 123, 135, 164, 245, 334
AclI AACGTT 1 cut(s) 261
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 4 cut(s) 3, 27, 237, 309
AcsI RAATTY 2 cut(s) 699, 882
AcuI CTGAAG 2 cut(s) 834, 885
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 2 cut(s) 643, 973
AfiI CCNNNNNNNGG 1 cut(s) 682
AflIII ACRYGT 1 cut(s) 842
AgeI ACCGGT 1 cut(s) 759
AgsI TTSAA 6 cut(s) 467, 604, 913, 952, 989, 1068
AhdI GACNNNNNGTC 1 cut(s) 101
AjiI CACGTC 1 cut(s) 67
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 4 cut(s) 503, 548, 681, 860
AluI AGCT 4 cut(s) 503, 548, 681, 860
AlwI GGATC 1 cut(s) 563
Ama87I CYCGRG 2 cut(s) 876, 980
AoxI GGCC 7 cut(s) 3, 27, 75, 218, 237, 309, 393
ApoI RAATTY 2 cut(s) 699, 882
AsiGI ACCGGT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 844
AspS9I GGNCC 5 cut(s) 103, 111, 218, 632, 718
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 884, 1069
AvaI CYCGRG 2 cut(s) 876, 980
AvaII GGWCC 4 cut(s) 103, 111, 632, 718
AxyI CCTNAGG 2 cut(s) 107, 118
BalI TGGCCA 1 cut(s) 5
BccI CCATC 3 cut(s) 347, 554, 709
BceAI ACGGC 4 cut(s) 65, 252, 258, 291
BclI TGATCA 1 cut(s) 550
BcnI CCSGG 1 cut(s) 101
BfaI CTAG 3 cut(s) 459, 497, 750
BfuAI ACCTGC 1 cut(s) 620
BglI GCCNNNNNGGC 1 cut(s) 245
BisI GCNGC 2 cut(s) 78, 246
BlsI GCNGC 2 cut(s) 79, 247
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 4 cut(s) 103, 111, 632, 718
BmeRI GACNNNNNGTC 1 cut(s) 101
BmeT110I CYCGRG 2 cut(s) 876, 980
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 5 cut(s) 103, 111, 218, 632, 718
BmrFI CCNGG 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 924
Bpu10I CCTNAGC 1 cut(s) 677
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 240, 322
BsaWI WCCGGW 1 cut(s) 759
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 188, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse118I RCCGGY 1 cut(s) 759
Bse21I CCTNAGG 2 cut(s) 107, 118
BseDI CCNNGG 2 cut(s) 240, 322
BseGI GGATG 1 cut(s) 784
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMII CTCAG 3 cut(s) 121, 132, 668
BseRI GAGGAG 1 cut(s) 347
BseYI CCCAGC 1 cut(s) 681
BsgI GTGCAG 1 cut(s) 648
BshFI GGCC 7 cut(s) 5, 29, 77, 220, 239, 311, 395
BshTI ACCGGT 1 cut(s) 759
BsiHKCI CYCGRG 2 cut(s) 876, 980
BsiSI CCGG 3 cut(s) 26, 101, 760
BslFI GGGAC 2 cut(s) 281, 384
BslI CCNNNNNNNGG 1 cut(s) 682
BsmFI GGGAC 2 cut(s) 281, 384
BsmI GAATGC 2 cut(s) 584, 1002
BsnI GGCC 7 cut(s) 5, 29, 77, 220, 239, 311, 395
BsoBI CYCGRG 2 cut(s) 876, 980
Bsp1407I TGTACA 1 cut(s) 641
Bsp143I GATC 2 cut(s) 550, 568
BspACI CCGC 6 cut(s) 78, 123, 135, 164, 245, 334
BspANI GGCC 7 cut(s) 5, 29, 77, 220, 239, 311, 395
BspCNI CTCAG 3 cut(s) 120, 131, 669
BspMI ACCTGC 1 cut(s) 620
BspPI GGATC 1 cut(s) 563
BsrFI RCCGGY 1 cut(s) 759
BsrGI TGTACA 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 759
BssECI CCNNGG 2 cut(s) 240, 322
BssMI GATC 2 cut(s) 550, 568
BssNI GRCGYC 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 425, 976, 1062
Bst6I CTCTTC 1 cut(s) 861
BstACI GRCGYC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 641
BstC8I GCNNGC 1 cut(s) 936
BstDEI CTNAG 4 cut(s) 107, 118, 410, 677
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 784
BstKTI GATC 2 cut(s) 553, 571
BstMBI GATC 2 cut(s) 550, 568
BstMWI GCNNNNNNNGC 4 cut(s) 245, 308, 545, 935
BstNSI RCATGY 2 cut(s) 846, 1035
BstSCI CCNGG 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
Bsu36I CCTNAGG 2 cut(s) 107, 118
BsuRI GGCC 7 cut(s) 5, 29, 77, 220, 239, 311, 395
BtgI CCRYGG 1 cut(s) 240
BtrI CACGTC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 784
BveI ACCTGC 1 cut(s) 620
Cac8I GCNNGC 1 cut(s) 936
Cfr10I RCCGGY 1 cut(s) 759
Cfr13I GGNCC 5 cut(s) 103, 111, 218, 632, 718
CseI GACGC 3 cut(s) 267, 336, 757
Csp6I GTAC 2 cut(s) 642, 972
CspAI ACCGGT 1 cut(s) 759
CviAII CATG 4 cut(s) 450, 843, 1032, 1096
CviQI GTAC 2 cut(s) 642, 972
DdeI CTNAG 4 cut(s) 107, 118, 410, 677
DpnI GATC 2 cut(s) 552, 570
DpnII GATC 2 cut(s) 550, 568
DriI GACNNNNNGTC 1 cut(s) 101
EaeI YGGCCR 4 cut(s) 3, 27, 237, 309
Eam1104I CTCTTC 1 cut(s) 861
Eam1105I GACNNNNNGTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 861
EciI GGCGGA 1 cut(s) 124
Eco47I GGWCC 4 cut(s) 103, 111, 632, 718
Eco57I CTGAAG 2 cut(s) 834, 885
Eco81I CCTNAGG 2 cut(s) 107, 118
Eco88I CYCGRG 2 cut(s) 876, 980
EcoO109I RGGNCCY 2 cut(s) 218, 632
EcoRI GAATTC 2 cut(s) 699, 882
FaeI CATG 4 cut(s) 453, 846, 1035, 1099
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 2 cut(s) 281, 384
FatI CATG 4 cut(s) 449, 842, 1031, 1095
FauNDI CATATG 1 cut(s) 1042
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 78, 246
FokI GGATG 1 cut(s) 791
Fsp4HI GCNGC 2 cut(s) 78, 246
FspBI CTAG 3 cut(s) 459, 497, 750
GluI GCNGC 2 cut(s) 78, 246
GsaI CCCAGC 1 cut(s) 685
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 7 cut(s) 5, 29, 77, 220, 239, 311, 395
HapII CCGG 3 cut(s) 26, 101, 760
HgaI GACGC 3 cut(s) 267, 336, 757
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 4 cut(s) 453, 846, 1035, 1099
HincII GTYRAC 4 cut(s) 85, 234, 259, 384
HindII GTYRAC 4 cut(s) 85, 234, 259, 384
HinfI GANTC 3 cut(s) 20, 314, 872
HpaII CCGG 3 cut(s) 26, 101, 760
HphI GGTGA 2 cut(s) 884, 1069
Hpy166II GTNNAC 9 cut(s) 85, 114, 234, 259, 384, 444, 518, 642, 972
Hpy188I TCNGA 5 cut(s) 213, 326, 421, 865, 904
Hpy188III TCNNGA 4 cut(s) 467, 572, 876, 941
Hpy8I GTNNAC 9 cut(s) 85, 114, 234, 259, 384, 444, 518, 642, 972
Hpy99I CGWCG 4 cut(s) 56, 65, 68, 283
HpyAV CCTTC 5 cut(s) 86, 749, 946, 958, 1081
HpyCH4III ACNGT 3 cut(s) 425, 976, 1062
HpyCH4IV ACGT 2 cut(s) 66, 261
HpyCH4V TGCA 3 cut(s) 582, 629, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 308, 545, 935
HpyF3I CTNAG 4 cut(s) 107, 118, 410, 677
HpySE526I ACGT 2 cut(s) 66, 261
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 4 cut(s) 453, 846, 1035, 1099
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 2 cut(s) 550, 568
LmnI GCTCC 3 cut(s) 299, 545, 943
MaeI CTAG 3 cut(s) 459, 497, 750
MaeII ACGT 2 cut(s) 66, 261
MalI GATC 2 cut(s) 552, 570
MboI GATC 2 cut(s) 550, 568
MboII GAAGA 9 cut(s) 447, 472, 475, 592, 840, 878, 998, 1001, 1066
MfeI CAATTG 1 cut(s) 604
MflI RGATCY 1 cut(s) 568
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 470, 604, 699, 801, 832, 882, 908, 1099
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 844
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 827
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 26, 101, 760
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 604
Mva1269I GAATGC 2 cut(s) 584, 1002
MwoI GCNNNNNNNGC 4 cut(s) 245, 308, 545, 935
NciI CCSGG 1 cut(s) 101
NdeI CATATG 1 cut(s) 1042
NdeII GATC 2 cut(s) 550, 568
NlaIII CATG 4 cut(s) 453, 846, 1035, 1099
NmeAIII GCCGAG 1 cut(s) 371
NspI RCATGY 2 cut(s) 846, 1035
PaeR7I CTCGAG 2 cut(s) 876, 980
PciI ACATGT 1 cut(s) 842
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 60
PctI GAATGC 2 cut(s) 584, 1002
PdmI GAANNNNTTC 1 cut(s) 844
PfeI GAWTC 3 cut(s) 20, 314, 872
PinAI ACCGGT 1 cut(s) 759
PkrI GCNGC 2 cut(s) 79, 247
PpuMI RGGWCCY 1 cut(s) 632
PscI ACATGT 1 cut(s) 842
Psp1406I AACGTT 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 632
PspFI CCCAGC 1 cut(s) 681
PspPI GGNCC 5 cut(s) 103, 111, 218, 632, 718
PspPPI RGGWCCY 1 cut(s) 632
PspXI VCTCGAGB 1 cut(s) 980
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 2 cut(s) 643, 973
RsaNI GTAC 2 cut(s) 642, 972
SaqAI TTAA 1 cut(s) 827
SatI GCNGC 2 cut(s) 78, 246
Sau3AI GATC 2 cut(s) 550, 568
Sau96I GGNCC 5 cut(s) 103, 111, 218, 632, 718
ScrFI CCNGG 1 cut(s) 101
Sfr274I CTCGAG 2 cut(s) 876, 980
SinI GGWCC 4 cut(s) 103, 111, 632, 718
SlaI CTCGAG 2 cut(s) 876, 980
SmlI CTYRAG 2 cut(s) 876, 980
SmoI CTYRAG 2 cut(s) 876, 980
Sse9I AATT 8 cut(s) 470, 604, 699, 801, 832, 882, 908, 1099
SsiI CCGC 6 cut(s) 78, 123, 135, 164, 245, 334
SspMI CTAG 3 cut(s) 459, 497, 750
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 425, 976, 1062
TaiI ACGT 2 cut(s) 69, 264
TaqI TCGA 3 cut(s) 51, 877, 981
TasI AATT 8 cut(s) 470, 604, 699, 801, 832, 882, 908, 1099
TatI WGTACW 1 cut(s) 641
TauI GCSGC 2 cut(s) 80, 248
TfiI GAWTC 3 cut(s) 20, 314, 872
Tru1I TTAA 1 cut(s) 827
Tru9I TTAA 1 cut(s) 827
TspDTI ATGAA 3 cut(s) 133, 585, 591
TspGWI ACGGA 2 cut(s) 285, 780
VpaK11BI GGWCC 4 cut(s) 103, 111, 632, 718
XapI RAATTY 2 cut(s) 699, 882
XceI RCATGY 2 cut(s) 846, 1035
XhoI CTCGAG 2 cut(s) 876, 980
XmnI GAANNNNTTC 1 cut(s) 844
XspI CTAG 3 cut(s) 459, 497, 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.