Rh7AG397000

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000191
Physical Location & Seq
Reverse (-)
52094208 .. 52097615
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG397000.1

Sequence Viewer

Length: 384 bp
ATGGCCATTTCTCAGCGTGATGATCCCCTCGACCACAAAACCCCATTGCTCCAAAACGACGTCGAGGAGGCCGTTTTGGACTTCAGAGACTCCTCCTTCCAGAAAAGCTCAGGCGGCTGGCGCTCCGCCGCCTTTATAATCGGGGTGGGATGTGCGGAGAGGTTCGCATTCTATGGCGTCAGCTCCAACCTCGTGACGTTTCTGAGCGGGCCGTTGGGGGAGTCGACAGCTACGGCGGCGGAGAATGTGAACACGTGGTCAGGAACGGCGTCGTTGCTTCCCTTGCTCGGAGCCGTCGTCGCCGATTCGTTTCTCGGTCGCTACCGCACCATCGTTATCTCTTCTCTGCTCTATATCCTGGTTGATGAGGAGGCTTCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

127

Amino Acids

13.59

Weight (kDa)

4.43

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 137
AatII GACGTC 1 cut(s) 63
AccBSI CCGCTC 1 cut(s) 207
AccI GTMKAC 1 cut(s) 224
AciI CCGC 8 cut(s) 114, 126, 129, 155, 207, 236, 239, 325
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 67
AcvI CACGTG 1 cut(s) 255
AcyI GRCGYC 3 cut(s) 60, 177, 269
AfiI CCNNNNNNNGG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 252
AjnI CCWGG 1 cut(s) 357
AluBI AGCT 3 cut(s) 108, 183, 230
AluI AGCT 3 cut(s) 108, 183, 230
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 17
AoxI GGCC 3 cut(s) 3, 69, 209
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 209
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 191
BbrPI CACGTG 1 cut(s) 255
BccI CCATC 1 cut(s) 338
BceAI ACGGC 5 cut(s) 56, 196, 249, 278, 282
BciT130I CCWGG 1 cut(s) 359
BcoDI GTCTC 1 cut(s) 81
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 3 cut(s) 115, 129, 237
BlsI GCNGC 3 cut(s) 116, 130, 238
Bme1390I CCNGG 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 359
Bpu10I CCTNAGC 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 255
BsaHI GRCGYC 3 cut(s) 60, 177, 269
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 155
BseLI CCNNNNNNNGG 1 cut(s) 287
BseMI GCAATG 1 cut(s) 44
BseMII CTCAG 3 cut(s) 26, 123, 194
BseRI GAGGAG 3 cut(s) 80, 82, 383
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 5, 71, 211
BsiEI CGRYCG 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 287
BsmAI GTCTC 1 cut(s) 81
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 3 cut(s) 5, 71, 211
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 8 cut(s) 114, 126, 129, 155, 207, 236, 239, 325
BspANI GGCC 3 cut(s) 5, 71, 211
BspCNI CTCAG 3 cut(s) 25, 122, 195
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 44
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 3 cut(s) 60, 177, 269
BssSI CACGAG 1 cut(s) 191
Bst2BI CACGAG 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 359
Bst6I CTCTTC 1 cut(s) 346
BstACI GRCGYC 3 cut(s) 60, 177, 269
BstBAI YACGTR 1 cut(s) 255
BstC8I GCNNGC 2 cut(s) 119, 209
BstDEI CTNAG 3 cut(s) 12, 109, 203
BstF5I GGATG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 1 cut(s) 22
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 114, 120, 236, 283, 299
BstNI CCWGG 1 cut(s) 359
BstSCI CCNGG 1 cut(s) 357
BsuRI GGCC 3 cut(s) 5, 71, 211
BtsCI GGATG 1 cut(s) 155
Cac8I GCNNGC 2 cut(s) 119, 209
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 209
CseI GACGC 2 cut(s) 166, 258
CviJI RGCY 9 cut(s) 5, 71, 108, 117, 183, 211, 230, 293, 374
CviKI_1 RGCY 9 cut(s) 5, 71, 108, 117, 183, 211, 230, 293, 374
DdeI CTNAG 3 cut(s) 12, 109, 203
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 2 cut(s) 115, 254
Eco57I CTGAAG 1 cut(s) 67
Eco72I CACGTG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 357
FaiI YATR 3 cut(s) 137, 174, 354
FauI CCCGC 1 cut(s) 200
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 3 cut(s) 115, 129, 237
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 115, 129, 237
GlaI GCGC 1 cut(s) 122
GluI GCNGC 3 cut(s) 115, 129, 237
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 3 cut(s) 5, 71, 211
HgaI GACGC 2 cut(s) 166, 258
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 3 cut(s) 60, 177, 269
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 3 cut(s) 89, 221, 305
Hpy166II GTNNAC 2 cut(s) 225, 250
Hpy188I TCNGA 3 cut(s) 86, 204, 290
Hpy188III TCNNGA 3 cut(s) 100, 193, 261
Hpy8I GTNNAC 2 cut(s) 225, 250
Hpy99I CGWCG 5 cut(s) 62, 65, 274, 299, 302
HpyAV CCTTC 1 cut(s) 106
HpyCH4IV ACGT 3 cut(s) 60, 197, 254
HpyF10VI GCNNNNNNNGC 5 cut(s) 114, 120, 236, 283, 299
HpyF3I CTNAG 3 cut(s) 12, 109, 203
HpySE526I ACGT 3 cut(s) 60, 197, 254
Hsp92I GRCGYC 3 cut(s) 60, 177, 269
HspAI GCGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 22
LmnI GCTCC 4 cut(s) 54, 128, 188, 290
LpnPI CCDG 6 cut(s) 96, 103, 113, 246, 344, 371
MaeII ACGT 3 cut(s) 60, 197, 254
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 24
MbiI CCGCTC 1 cut(s) 207
MboI GATC 1 cut(s) 22
MboII GAAGA 1 cut(s) 333
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 83, 230
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 8 cut(s) 38, 58, 61, 103, 153, 200, 361, 364
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 382
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 359
Mva1269I GAATGC 1 cut(s) 167
MvaI CCWGG 1 cut(s) 359
MwoI GCNNNNNNNGC 5 cut(s) 114, 120, 236, 283, 299
NdeII GATC 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 193
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 294
PctI GAATGC 1 cut(s) 167
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 3 cut(s) 116, 130, 238
PleI GAGTC 2 cut(s) 83, 229
PmaCI CACGTG 1 cut(s) 255
PmlI CACGTG 1 cut(s) 255
PpsI GAGTC 2 cut(s) 83, 229
Ppu21I YACGTR 1 cut(s) 255
PsiI TTATAA 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 357
PspCI CACGTG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 292
PspPI GGNCC 1 cut(s) 209
SalI GTCGAC 1 cut(s) 223
SaqAI TTAA 1 cut(s) 382
SatI GCNGC 3 cut(s) 115, 129, 237
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 209
SchI GAGTC 2 cut(s) 83, 230
ScrFI CCNGG 1 cut(s) 359
SetI ASST 8 cut(s) 63, 110, 164, 185, 192, 200, 232, 257
SsiI CCGC 8 cut(s) 114, 126, 129, 155, 207, 236, 239, 325
StyD4I CCNGG 1 cut(s) 357
TaiI ACGT 3 cut(s) 63, 200, 257
TaqI TCGA 3 cut(s) 30, 63, 224
TaqII GACCGA 1 cut(s) 305
TauI GCSGC 3 cut(s) 117, 131, 239
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 382
Tru9I TTAA 1 cut(s) 382
TseFI GTSAC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 224
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.