Rh7BG378500

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000191
Physical Location & Seq
Reverse (-)
40756390 .. 40758757
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG378500.1

Sequence Viewer

Length: 621 bp
ATGCTGTTGCTGGTGACTGCTTGTGTTTCCCCTACCATCAGCATTTTGAAAGGTGGAATGGTCGTGCCTGACCGCACCTCCTATTTGGGACTCGGCTTGTTGACCGTGTCGGCCTTGCTTACTTCTTCTGAGCTTCAAATATTGTTATTCTTCTTCTCTCTATATCTAGTAGCAGTTGCGCAAGGTGGACACAAGCCCTGTGTTCAGGCTTTTGGGGCAGATCAGTTTGATGGACAAGATCCAGAGGAGTGCAAAGCGAAAAGCTCATTCTTCAATTGGTGGTACTTTGGCATGTGTGCAGGCTCGCTATTCACAGTCTTGGTATTGGCCTACATACAGGACAATCTAAGCTGGGGTCTGGGTTTTGGAATTCCATGTGTTGTGATGGTCCTTGCACTGATTATTTTTGTCAGTGGAACTAGAACATACAGGTTCCTCAACAAAGCCTTGCTTGCACCAGATGATTTGAAGAAAAATGGGAAGGTGTGTACCATCGCTGACGTTGAGGAAGCAAAGGCTGTTCTTAGGCTGTTTCCAATATGGGCTACATGCTTGGCATATGCTATTGTATTTGCACAGTGCACTACTTTCTTCACCAAGCAAGGTGCCACCATGGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

206

Amino Acids

22.46

Weight (kDa)

6.54

Isoelectric Point (pI)

30.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 29 - 145 2.9e-36 POT family
MFS_1 PF07690 29 - 197 2e-07 Major Facilitator Superfamily
PTR2 PF00854 161 - 206 1.8e-06 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 605
AciI CCGC 1 cut(s) 73
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 369
AfaI GTAC 2 cut(s) 284, 490
AgsI TTSAA 4 cut(s) 49, 137, 274, 469
AluBI AGCT 3 cut(s) 133, 264, 351
AluI AGCT 3 cut(s) 133, 264, 351
Alw21I GWGCWC 1 cut(s) 584
Alw44I GTGCAC 1 cut(s) 580
AlwI GGATC 1 cut(s) 233
AoxI GGCC 2 cut(s) 111, 327
ApaLI GTGCAC 1 cut(s) 580
ApoI RAATTY 1 cut(s) 369
AspLEI GCGC 1 cut(s) 181
AspS9I GGNCC 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 25, 586
AvaII GGWCC 1 cut(s) 388
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 584
BccI CCATC 4 cut(s) 44, 224, 379, 500
BfaI CTAG 2 cut(s) 167, 420
Bme18I GGWCC 1 cut(s) 388
BmgT120I GGNCC 1 cut(s) 388
BmiI GGNNCC 2 cut(s) 434, 607
BsaJI CCNNGG 1 cut(s) 612
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
BseDI CCNNGG 1 cut(s) 612
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 1 cut(s) 260
BseSI GKGCMC 1 cut(s) 584
BseYI CCCAGC 1 cut(s) 351
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 2 cut(s) 113, 329
BshNI GGYRCC 1 cut(s) 605
BsiHKAI GWGCWC 1 cut(s) 584
BslFI GGGAC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 2 cut(s) 113, 329
Bsp1286I GDGCHC 1 cut(s) 584
Bsp143I GATC 2 cut(s) 220, 238
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 73
BspANI GGCC 2 cut(s) 113, 329
BspCNI CTCAG 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 434, 607
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 605
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 220, 238
BssT1I CCWWGG 1 cut(s) 612
Bst4CI ACNGT 3 cut(s) 106, 316, 579
BstC8I GCNNGC 3 cut(s) 301, 305, 453
BstDEI CTNAG 3 cut(s) 129, 347, 524
BstDSI CCRYGG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 181
BstKTI GATC 2 cut(s) 223, 241
BstMBI GATC 2 cut(s) 220, 238
BstMWI GCNNNNNNNGC 2 cut(s) 215, 452
BstNSI RCATGY 2 cut(s) 295, 552
BstSLI GKGCMC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 238
BstYI RGATCY 1 cut(s) 238
BsuRI GGCC 2 cut(s) 113, 329
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 478
BtsIMutI CAGTG 3 cut(s) 395, 418, 584
Cac8I GCNNGC 3 cut(s) 301, 305, 453
CfoI GCGC 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 388
Csp6I GTAC 2 cut(s) 283, 489
CviAII CATG 4 cut(s) 292, 375, 549, 613
CviQI GTAC 2 cut(s) 283, 489
DdeI CTNAG 3 cut(s) 129, 347, 524
DpnI GATC 2 cut(s) 222, 240
DpnII GATC 2 cut(s) 220, 238
Eco130I CCWWGG 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 4 cut(s) 295, 378, 552, 616
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 102
FatI CATG 4 cut(s) 291, 374, 548, 612
FauNDI CATATG 1 cut(s) 559
FspBI CTAG 2 cut(s) 167, 420
FspI TGCGCA 1 cut(s) 180
GlaI GCGC 1 cut(s) 180
GsaI CCCAGC 1 cut(s) 355
HaeIII GGCC 2 cut(s) 113, 329
HhaI GCGC 1 cut(s) 181
Hin1II CATG 4 cut(s) 295, 378, 552, 616
Hin6I GCGC 1 cut(s) 179
HinP1I GCGC 1 cut(s) 179
HincII GTYRAC 1 cut(s) 102
HindII GTYRAC 1 cut(s) 102
HinfI GANTC 1 cut(s) 90
HphI GGTGA 2 cut(s) 25, 586
Hpy166II GTNNAC 4 cut(s) 102, 188, 489, 582
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 4 cut(s) 102, 188, 489, 582
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 3 cut(s) 106, 316, 579
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 6 cut(s) 252, 299, 395, 455, 575, 582
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 452
HpyF3I CTNAG 3 cut(s) 129, 347, 524
HpySE526I ACGT 1 cut(s) 501
Hsp92II CATG 4 cut(s) 295, 378, 552, 616
HspAI GCGC 1 cut(s) 179
Kzo9I GATC 2 cut(s) 220, 238
MaeI CTAG 2 cut(s) 167, 420
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 13
MalI GATC 2 cut(s) 222, 240
MboI GATC 2 cut(s) 220, 238
MboII GAAGA 6 cut(s) 117, 142, 145, 262, 481, 583
MfeI CAATTG 1 cut(s) 274
MflI RGATCY 1 cut(s) 238
MhlI GDGCHC 1 cut(s) 584
MluCI AATT 2 cut(s) 274, 369
MlyI GAGTC 1 cut(s) 84
MnlI CCTC 4 cut(s) 88, 238, 446, 499
MunI CAATTG 1 cut(s) 274
MwoI GCNNNNNNNGC 2 cut(s) 215, 452
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 559
NdeII GATC 2 cut(s) 220, 238
NlaIII CATG 4 cut(s) 295, 378, 552, 616
NlaIV GGNNCC 2 cut(s) 434, 607
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 13
NsbI TGCGCA 1 cut(s) 180
NspI RCATGY 2 cut(s) 295, 552
PflFI GACNNNGTC 1 cut(s) 106
PleI GAGTC 1 cut(s) 84
PpsI GAGTC 1 cut(s) 84
PspFI CCCAGC 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 434, 607
PspPI GGNCC 1 cut(s) 388
PsuI RGATCY 1 cut(s) 238
PsyI GACNNNGTC 1 cut(s) 106
RsaI GTAC 2 cut(s) 284, 490
RsaNI GTAC 2 cut(s) 283, 489
Sau3AI GATC 2 cut(s) 220, 238
Sau96I GGNCC 1 cut(s) 388
SchI GAGTC 1 cut(s) 84
SduI GDGCHC 1 cut(s) 584
SinI GGWCC 1 cut(s) 388
Sse9I AATT 2 cut(s) 274, 369
SsiI CCGC 1 cut(s) 73
SspI AATATT 1 cut(s) 141
SspMI CTAG 2 cut(s) 167, 420
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 3 cut(s) 106, 316, 579
TaiI ACGT 1 cut(s) 504
TasI AATT 2 cut(s) 274, 369
TscAI CASTG 3 cut(s) 402, 418, 584
TseFI GTSAC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 13
TspRI CASTG 3 cut(s) 402, 418, 584
Tth111I GACNNNGTC 1 cut(s) 106
VneI GTGCAC 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 388
XapI RAATTY 1 cut(s) 369
XceI RCATGY 2 cut(s) 295, 552
XspI CTAG 2 cut(s) 167, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.