RLG00000001617

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000191
Physical Location & Seq
Forward (+)
18306206 .. 18309870
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001617

Sequence Viewer

Length: 759 bp
ATGGCTACATCTCTCGAAGAATCTCCGGAGACCCGAACTCCACTCCTGGACGGCGCCGTTGACTACAAAGGCCATCCGGCCTGCAGATCCACCTCCGGCGGTTGGCTTTCCGCATCGTTCATAATAGTTGCGGATAGGTTCGCCATCTATGGAATAAGTTCGAACCTGATAACGTTTCTGACGGGGCCATTGGGACAGTCGACGGCGGCGGAAAATGTGAACATATGGTCCGGAACAGCGTTCTTGTTTCCTTTATTGGGAGCGTTCGTGGCGGATTCTGTTCTCGATCGCTACCGCACCATTATTGTTGCTTCTCTGCTCTACATTTTGGGACTGGGCTTGTTGACCGTGTCGGCCTTGCTTACTTCTTCTGAGCTTCAAATATTGTTATTCTTCTTCTCTCTATATCTAGTAGCAGTTGCGCAAGGTGGACATGAGCCCTGTGTTCAGGCTAGGTTTTCGAGGCAGATCAGTTTGATGGACAAGATCCAGAGGAGTGCAAAGCAAAAAGCTCATTCTCCAATTGGTGGTACTTTGGACAATCTAAGCTGGGGTCTGGGTTTTGGAATTCCTTGTGTTGTGATGGTCCTTGCACTGATTATTTTTGTCAGTGGAACTAGGACATACCGGTTCCTCAACAAAACCTTGCATGCACCAGATAATTTGAAGAAAAAGGGGAAGGTGTGTACCATCGCTGAGGTTGAGGAAGCAAAGGCTGTTCTGAGGCTGTTTTCAATATGGGCTACATGCTTGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

253

Amino Acids

27.23

Weight (kDa)

8.83

Isoelectric Point (pI)

32.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 98 - 236 2.5e-15 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 423
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 527
AccI GTMKAC 1 cut(s) 200
AccIII TCCGGA 2 cut(s) 25, 230
AciI CCGC 7 cut(s) 99, 111, 131, 206, 209, 272, 295
AclI AACGTT 1 cut(s) 173
AclWI GGATC 2 cut(s) 81, 481
AcsI RAATTY 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 54
AfaI GTAC 2 cut(s) 532, 688
AfiI CCNNNNNNNGG 3 cut(s) 102, 257, 527
AgeI ACCGGT 1 cut(s) 627
AgsI TTSAA 3 cut(s) 380, 667, 735
AjnI CCWGG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 212, 244
AluBI AGCT 3 cut(s) 376, 512, 549
AluI AGCT 3 cut(s) 376, 512, 549
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 81, 481
Aor13HI TCCGGA 2 cut(s) 25, 230
AoxI GGCC 4 cut(s) 70, 78, 185, 354
ApoI RAATTY 1 cut(s) 567
AsiGI ACCGGT 1 cut(s) 627
Asp700I GAANNNNTTC 1 cut(s) 157
AspLEI GCGC 2 cut(s) 56, 424
AspS9I GGNCC 3 cut(s) 185, 228, 586
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 2 cut(s) 228, 586
BanI GGYRCC 1 cut(s) 53
BanII GRGCYC 1 cut(s) 441
BbvCI CCTCAGC 1 cut(s) 696
BccI CCATC 5 cut(s) 81, 152, 472, 577, 698
BceAI ACGGC 3 cut(s) 41, 67, 219
BciT130I CCWGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 3 cut(s) 410, 453, 618
BfmI CTRYAG 1 cut(s) 82
BfoI RGCGCY 1 cut(s) 57
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 47
Bme18I GGWCC 2 cut(s) 228, 586
BmgT120I GGNCC 3 cut(s) 185, 228, 586
BmiI GGNNCC 3 cut(s) 55, 186, 632
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 344
BmsI GCATC 1 cut(s) 122
BmuI ACTGGG 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 161
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 23
BsaWI WCCGGW 3 cut(s) 25, 230, 627
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 252, 282
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 257, 527
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 1 cut(s) 339
BseAI TCCGGA 2 cut(s) 25, 230
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 102, 257, 527
BseMII CTCAG 3 cut(s) 363, 687, 713
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 549
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 4 cut(s) 72, 80, 187, 356
BshNI GGYRCC 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 627
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 5 cut(s) 26, 77, 96, 231, 628
BslFI GGGAC 2 cut(s) 207, 345
BslI CCNNNNNNNGG 3 cut(s) 102, 257, 527
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 207, 345
BsnI GGCC 4 cut(s) 72, 80, 187, 356
Bso31I GGTCTC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 441
Bsp13I TCCGGA 2 cut(s) 25, 230
Bsp143I GATC 4 cut(s) 86, 286, 468, 486
BspACI CCGC 7 cut(s) 99, 111, 131, 206, 209, 272, 295
BspANI GGCC 4 cut(s) 72, 80, 187, 356
BspCNI CTCAG 3 cut(s) 364, 688, 714
BspEI TCCGGA 2 cut(s) 25, 230
BspLI GGNNCC 3 cut(s) 55, 186, 632
BspMAI CTGCAG 1 cut(s) 86
BspPI GGATC 2 cut(s) 81, 481
BspT104I TTCGAA 1 cut(s) 161
BspT107I GGYRCC 1 cut(s) 53
BspTNI GGTCTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 627
BsrI ACTGG 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 627
BssMI GATC 4 cut(s) 86, 286, 468, 486
BssNI GRCGYC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 47
Bst4CI ACNGT 2 cut(s) 198, 349
BstACI GRCGYC 1 cut(s) 54
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 2 cut(s) 82, 651
BstDEI CTNAG 4 cut(s) 372, 545, 696, 722
BstF5I GGATG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 424
BstKTI GATC 4 cut(s) 89, 289, 471, 489
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 86, 286, 468, 486
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 47
BstNSI RCATGY 2 cut(s) 653, 750
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 82
BstX2I RGATCY 2 cut(s) 86, 486
BstYI RGATCY 2 cut(s) 86, 486
BsuRI GGCC 4 cut(s) 72, 80, 187, 356
BtgZI GCGATG 1 cut(s) 676
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 2 cut(s) 593, 616
Cac8I GCNNGC 2 cut(s) 82, 651
CfoI GCGC 2 cut(s) 56, 424
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 3 cut(s) 185, 228, 586
Csp6I GTAC 2 cut(s) 531, 687
CspAI ACCGGT 1 cut(s) 627
CviAII CATG 3 cut(s) 434, 650, 747
CviQI GTAC 2 cut(s) 531, 687
DdeI CTNAG 4 cut(s) 372, 545, 696, 722
DinI GGCGCC 1 cut(s) 55
DpnI GATC 4 cut(s) 88, 288, 470, 488
DpnII GATC 4 cut(s) 86, 286, 468, 486
EciI GGCGGA 2 cut(s) 224, 287
Eco24I GRGCYC 1 cut(s) 441
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 228, 586
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 45
EcoT38I GRGCYC 1 cut(s) 441
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
FaeI CATG 3 cut(s) 437, 653, 750
FaqI GGGAC 2 cut(s) 207, 345
FatI CATG 3 cut(s) 433, 649, 746
FauNDI CATATG 1 cut(s) 224
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 3 cut(s) 410, 453, 618
FspI TGCGCA 1 cut(s) 423
GlaI GCGC 2 cut(s) 55, 423
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 553
HaeII RGCGCY 1 cut(s) 57
HaeIII GGCC 4 cut(s) 72, 80, 187, 356
HapII CCGG 5 cut(s) 26, 77, 96, 231, 628
HhaI GCGC 2 cut(s) 56, 424
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 3 cut(s) 437, 653, 750
Hin6I GCGC 2 cut(s) 54, 422
HinP1I GCGC 2 cut(s) 54, 422
HincII GTYRAC 3 cut(s) 61, 201, 345
HindII GTYRAC 3 cut(s) 61, 201, 345
HinfI GANTC 2 cut(s) 20, 275
HpaII CCGG 5 cut(s) 26, 77, 96, 231, 628
Hpy166II GTNNAC 6 cut(s) 61, 201, 220, 345, 431, 687
Hpy188I TCNGA 3 cut(s) 180, 373, 723
Hpy188III TCNNGA 5 cut(s) 14, 26, 231, 284, 490
Hpy8I GTNNAC 6 cut(s) 61, 201, 220, 345, 431, 687
Hpy99I CGWCG 1 cut(s) 205
HpyAV CCTTC 1 cut(s) 673
HpyCH4III ACNGT 2 cut(s) 198, 349
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 5 cut(s) 84, 500, 593, 649, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 4 cut(s) 372, 545, 696, 722
HpySE526I ACGT 1 cut(s) 173
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 3 cut(s) 437, 653, 750
HspAI GCGC 2 cut(s) 54, 422
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 2 cut(s) 25, 230
Kzo9I GATC 4 cut(s) 86, 286, 468, 486
LmnI GCTCC 1 cut(s) 260
LweI GCATC 1 cut(s) 122
MaeI CTAG 3 cut(s) 410, 453, 618
MaeII ACGT 1 cut(s) 173
MalI GATC 4 cut(s) 88, 288, 470, 488
MboI GATC 4 cut(s) 86, 286, 468, 486
MboII GAAGA 5 cut(s) 29, 360, 385, 388, 679
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 2 cut(s) 86, 486
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 3 cut(s) 522, 567, 661
Mly113I GGCGCC 1 cut(s) 54
MnlI CCTC 7 cut(s) 103, 456, 486, 644, 691, 697, 717
MroI TCCGGA 2 cut(s) 25, 230
MroXI GAANNNNTTC 1 cut(s) 157
MspI CCGG 5 cut(s) 26, 77, 96, 231, 628
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 269
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 1 cut(s) 224
NdeII GATC 4 cut(s) 86, 286, 468, 486
NlaIII CATG 3 cut(s) 437, 653, 750
NlaIV GGNNCC 3 cut(s) 55, 186, 632
NsbI TGCGCA 1 cut(s) 423
NspI RCATGY 2 cut(s) 653, 750
NspV TTCGAA 1 cut(s) 161
PaeI GCATGC 1 cut(s) 653
PdmI GAANNNNTTC 1 cut(s) 157
PfeI GAWTC 2 cut(s) 20, 275
PflFI GACNNNGTC 1 cut(s) 349
PflMI CCANNNNNTGG 1 cut(s) 527
PfoI TCCNGGA 1 cut(s) 45
PinAI ACCGGT 1 cut(s) 627
PkrI GCNGC 1 cut(s) 208
Ple19I CGATCG 1 cut(s) 289
PluTI GGCGCC 1 cut(s) 57
Psp1406I AACGTT 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 549
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 3 cut(s) 55, 186, 632
PspPI GGNCC 3 cut(s) 185, 228, 586
PstI CTGCAG 1 cut(s) 86
PsuI RGATCY 2 cut(s) 86, 486
PsyI GACNNNGTC 1 cut(s) 349
PvuI CGATCG 1 cut(s) 289
RsaI GTAC 2 cut(s) 532, 688
RsaNI GTAC 2 cut(s) 531, 687
SalI GTCGAC 1 cut(s) 199
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 4 cut(s) 86, 286, 468, 486
Sau96I GGNCC 3 cut(s) 185, 228, 586
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 1 cut(s) 122
SfcI CTRYAG 1 cut(s) 82
SfoI GGCGCC 1 cut(s) 55
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 2 cut(s) 228, 586
SphI GCATGC 1 cut(s) 653
Sse9I AATT 3 cut(s) 522, 567, 661
SsiI CCGC 7 cut(s) 99, 111, 131, 206, 209, 272, 295
SspDI GGCGCC 1 cut(s) 53
SspI AATATT 1 cut(s) 384
SspMI CTAG 3 cut(s) 410, 453, 618
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 198, 349
TaiI ACGT 1 cut(s) 176
TaqI TCGA 5 cut(s) 15, 161, 200, 285, 461
TasI AATT 3 cut(s) 522, 567, 661
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 2 cut(s) 20, 275
TscAI CASTG 2 cut(s) 600, 616
TspDTI ATGAA 1 cut(s) 109
TspRI CASTG 2 cut(s) 600, 616
Tth111I GACNNNGTC 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 228, 586
XapI RAATTY 1 cut(s) 567
XceI RCATGY 2 cut(s) 653, 750
XmiI GTMKAC 1 cut(s) 200
XmnI GAANNNNTTC 1 cut(s) 157
XspI CTAG 3 cut(s) 410, 453, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.