Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Forward (+)

27928654 .. 27931255

Gene Structure 2602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG275800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAAGAACTTGATGTCGGATCGCAGTTTTTACATTGACAGTGAAGAAGAAGGTGATGAGGAGAAGGGAAACAAAGGCATAGAAATTGGGAAGGATTCTGAATTTTCGGGCTCAGAAGCCAAGCACCACTGGCAGCAGCAGATTAGCCCAGTTCTTACAACACCCAATGGCCTCAAAGTTACAGGGAATGAATGCTGTGAAAGATTGGCATACTATGGGATGAGCTCAAATCTGGTCATTTATTTCAAGCCACATGTGCACCAAACCAGTGCTAAAGCAGCTGAAAGCTACTCAAATTGGAGTGGAACAAGAAATTTAAAGAGGCGTTTAGGCATCTTCACTGCCATTGCTAACTTCTTTGATTTCCAAGACCATGGATGGAACTGCAAAGCTCAGATTTACAAAAGCCCCAACATTGCAAGTCTGCCCATTGCTGCTTATTGTCAGAGATGCATCTCGCGCCATTTAACTGACTTTCTTTGGGCTCGGATCTACGAAAGCTTCTCAACAGAAAAGAGAAGAAAAACAATGGATGATACCTGTGCTCTGTGCGGAGACACTTCAATGGGTCACATATGGGCCCTGGCCATCGACAGTTCTGCTCTACCTGCATTTTTCACCTCCGTTTCATCTGTGGAGATTCCCATTGCTGCCTCTGCAAGAGTGAATCTAAGATCATCTTCGTCACCAAGGTTAGGCATCAGTTGTAATCCAAGGCTTGCCAAGCAACTTAATTCGTGTCCAAGCATGGAACTACCTACTACAGGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

257

Amino Acids

28.6

Weight (kDa)

8.05

Isoelectric Point (pI)

58.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	616
AccII	CGCG	1 cut(s)	460
AciI	CCGC	1 cut(s)	552
AclWI	GGATC	2 cut(s)	27, 497
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	2 cut(s)	101, 313
AfiI	CCNNNNNNNGG	2 cut(s)	695, 764
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	247, 564
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	5 cut(s)	225, 281, 288, 392, 501
AluI	AGCT	5 cut(s)	225, 281, 288, 392, 501
Alw21I	GWGCWC	3 cut(s)	227, 261, 547
Alw26I	GTCTC	1 cut(s)	549
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	2 cut(s)	27, 497
AoxI	GGCC	3 cut(s)	169, 579, 585
ApaI	GGGCCC	1 cut(s)	583
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	5 cut(s)	133, 136, 278, 434, 650
ApoI	RAATTY	2 cut(s)	101, 313
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	579, 580
AsuHPI	GGTGA	3 cut(s)	65, 610, 678
BaeGI	GKGCMC	2 cut(s)	261, 583
BalI	TGGCCA	1 cut(s)	587
BanII	GRGCYC	4 cut(s)	113, 227, 487, 583
Bbv12I	GWGCWC	3 cut(s)	227, 261, 547
BbvI	GCAGC	5 cut(s)	145, 148, 290, 421, 637
BccI	CCATC	2 cut(s)	372, 596
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	1 cut(s)	584
BcoDI	GTCTC	1 cut(s)	549
BfmI	CTRYAG	1 cut(s)	762
BfuAI	ACCTGC	1 cut(s)	616
BisI	GCNGC	5 cut(s)	134, 137, 279, 435, 651
BlsI	GCNGC	5 cut(s)	135, 138, 280, 436, 652
Bme1390I	CCNGG	1 cut(s)	584
BmgT120I	GGNCC	2 cut(s)	579, 580
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	1 cut(s)	584
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	4 cut(s)	342, 440, 462, 708
BmuI	ACTGGG	1 cut(s)	143
BsaJI	CCNNGG	4 cut(s)	373, 582, 689, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	695, 764
Bse1I	ACTGG	3 cut(s)	134, 149, 267
Bse3DI	GCAATG	4 cut(s)	345, 414, 429, 645
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	4 cut(s)	373, 582, 689, 713
BseGI	GGATG	3 cut(s)	225, 383, 538
BseLI	CCNNNNNNNGG	2 cut(s)	695, 764
BseMI	GCAATG	4 cut(s)	345, 414, 429, 645
BseMII	CTCAG	2 cut(s)	126, 407
BseNI	ACTGG	3 cut(s)	134, 149, 267
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	2 cut(s)	261, 583
BseXI	GCAGC	5 cut(s)	145, 148, 290, 421, 637
Bsh1236I	CGCG	1 cut(s)	460
BshFI	GGCC	3 cut(s)	171, 581, 587
BsiHKAI	GWGCWC	3 cut(s)	227, 261, 547
BslI	CCNNNNNNNGG	2 cut(s)	695, 764
BsmAI	GTCTC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	3 cut(s)	171, 581, 587
Bsp120I	GGGCCC	1 cut(s)	579
Bsp1286I	GDGCHC	6 cut(s)	113, 227, 261, 487, 547, 583
Bsp143I	GATC	3 cut(s)	19, 489, 674
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	1 cut(s)	552
BspANI	GGCC	3 cut(s)	171, 581, 587
BspCNI	CTCAG	2 cut(s)	125, 406
BspFNI	CGCG	1 cut(s)	460
BspLI	GGNNCC	1 cut(s)	581
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	2 cut(s)	27, 497
BsrDI	GCAATG	4 cut(s)	345, 414, 429, 645
BsrI	ACTGG	3 cut(s)	134, 149, 267
BssECI	CCNNGG	4 cut(s)	373, 582, 689, 713
BssMI	GATC	3 cut(s)	19, 489, 674
BssT1I	CCWWGG	3 cut(s)	373, 689, 713
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	2 cut(s)	41, 596
BstC8I	GCNNGC	1 cut(s)	720
BstDEI	CTNAG	3 cut(s)	112, 393, 671
BstDSI	CCRYGG	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	762
BstF5I	GGATG	3 cut(s)	225, 383, 538
BstFNI	CGCG	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	22, 492, 677
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	3 cut(s)	19, 489, 674
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 256, 278, 459, 608, 656, 724
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	762
BstSLI	GKGCMC	2 cut(s)	261, 583
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	5 cut(s)	145, 148, 290, 421, 637
BstX2I	RGATCY	1 cut(s)	489
BstXI	CCANNNNNNTGG	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	3 cut(s)	171, 581, 587
BtgI	CCRYGG	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	225, 383, 538
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	4 cut(s)	46, 127, 274, 339
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	1 cut(s)	720
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	2 cut(s)	579, 580
CviAII	CATG	3 cut(s)	254, 374, 748
DdeI	CTNAG	3 cut(s)	112, 393, 671
DpnI	GATC	3 cut(s)	21, 491, 676
DpnII	GATC	3 cut(s)	19, 489, 674
DraI	TTTAAA	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	585
Ecl136II	GAGCTC	1 cut(s)	225
Eco130I	CCWWGG	3 cut(s)	373, 689, 713
Eco24I	GRGCYC	4 cut(s)	113, 227, 487, 583
Eco53kI	GAGCTC	1 cut(s)	225
EcoICRI	GAGCTC	1 cut(s)	225
EcoNI	CCTNNNNNAGG	1 cut(s)	762
EcoO109I	RGGNCCY	1 cut(s)	580
EcoRII	CCWGG	1 cut(s)	582
EcoT14I	CCWWGG	3 cut(s)	373, 689, 713
EcoT22I	ATGCAT	1 cut(s)	455
EcoT38I	GRGCYC	4 cut(s)	113, 227, 487, 583
ErhI	CCWWGG	3 cut(s)	373, 689, 713
FaeI	CATG	3 cut(s)	257, 377, 751
FaiI	YATR	8 cut(s)	80, 211, 216, 255, 375, 575, 577, 749
FalI	AAGNNNNNCTT	2 cut(s)	664, 696
FatI	CATG	3 cut(s)	253, 373, 747
FauNDI	CATATG	1 cut(s)	575
Fnu4HI	GCNGC	5 cut(s)	134, 137, 279, 435, 651
FokI	GGATG	3 cut(s)	232, 390, 545
FriOI	GRGCYC	4 cut(s)	113, 227, 487, 583
Fsp4HI	GCNGC	5 cut(s)	134, 137, 279, 435, 651
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	5 cut(s)	134, 137, 279, 435, 651
HaeIII	GGCC	3 cut(s)	171, 581, 587
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	3 cut(s)	257, 377, 751
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HindIII	AAGCTT	1 cut(s)	499
HinfI	GANTC	3 cut(s)	95, 640, 667
HphI	GGTGA	3 cut(s)	65, 610, 678
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	6 cut(s)	19, 100, 115, 396, 447, 489
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	44, 58, 85
HpyCH4III	ACNGT	2 cut(s)	41, 596
HpyCH4V	TGCA	6 cut(s)	259, 387, 419, 453, 611, 659
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 256, 278, 459, 608, 656, 724
HpyF3I	CTNAG	3 cut(s)	112, 393, 671
Hsp92II	CATG	3 cut(s)	257, 377, 751
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	19, 489, 674
Lsp1109I	GCAGC	5 cut(s)	145, 148, 290, 421, 637
LweI	GCATC	4 cut(s)	342, 440, 462, 708
MaeIII	GTNAC	3 cut(s)	178, 569, 684
MalI	GATC	3 cut(s)	21, 491, 676
MboI	GATC	3 cut(s)	19, 489, 674
MboII	GAAGA	6 cut(s)	16, 56, 59, 328, 531, 672
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	6 cut(s)	113, 227, 261, 487, 547, 583
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	5 cut(s)	84, 101, 295, 313, 733
MluNI	TGGCCA	1 cut(s)	587
MnlI	CCTC	5 cut(s)	52, 182, 315, 631, 664
Mox20I	TGGCCA	1 cut(s)	587
Mph1103I	ATGCAT	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	587
MseI	TTAA	3 cut(s)	317, 467, 732
MslI	CAYNNNNRTG	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	584
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	7 cut(s)	130, 256, 278, 459, 608, 656, 724
NcoI	CCATGG	1 cut(s)	373
NdeI	CATATG	1 cut(s)	575
NdeII	GATC	3 cut(s)	19, 489, 674
NlaIII	CATG	3 cut(s)	257, 377, 751
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	569, 684
NsiI	ATGCAT	1 cut(s)	455
NspI	RCATGY	1 cut(s)	257
PciI	ACATGT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	95, 640, 667
PkrI	GCNGC	5 cut(s)	135, 138, 280, 436, 652
PscI	ACATGT	1 cut(s)	253
Psp124BI	GAGCTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	1 cut(s)	581
PspOMI	GGGCCC	1 cut(s)	579
PspPI	GGNCC	2 cut(s)	579, 580
PsuI	RGATCY	1 cut(s)	489
PvuII	CAGCTG	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	563
SacI	GAGCTC	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	317, 467, 732
SatI	GCNGC	5 cut(s)	134, 137, 279, 435, 651
Sau3AI	GATC	3 cut(s)	19, 489, 674
Sau96I	GGNCC	2 cut(s)	579, 580
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	6 cut(s)	113, 227, 261, 487, 547, 583
SfaNI	GCATC	4 cut(s)	342, 440, 462, 708
SfcI	CTRYAG	1 cut(s)	762
SmiMI	CAYNNNNRTG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	84, 101, 295, 313, 733
SsiI	CCGC	1 cut(s)	552
SstI	GAGCTC	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	3 cut(s)	373, 689, 713
TaaI	ACNGT	2 cut(s)	41, 596
TaqI	TCGA	1 cut(s)	591
TasI	AATT	5 cut(s)	84, 101, 295, 313, 733
TfiI	GAWTC	3 cut(s)	95, 640, 667
Tru1I	TTAA	3 cut(s)	317, 467, 732
Tru9I	TTAA	3 cut(s)	317, 467, 732
TscAI	CASTG	4 cut(s)	46, 134, 274, 346
TseFI	GTSAC	2 cut(s)	569, 684
TseI	GCWGC	5 cut(s)	133, 136, 278, 434, 650
Tsp45I	GTSAC	2 cut(s)	569, 684
TspDTI	ATGAA	3 cut(s)	17, 204, 618
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	4 cut(s)	46, 134, 274, 346
VneI	GTGCAC	1 cut(s)	257
XagI	CCTNNNNNAGG	1 cut(s)	762
XapI	RAATTY	2 cut(s)	101, 313
XceI	RCATGY	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.