RchiOBHm_Chr7g0227791

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000191
Physical Location & Seq
Forward (+)
51018270 .. 51019166
897 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20403

Sequence Viewer

Length: 543 bp
ATGGCAATCCAATTTGAAGAGCAACTTGATCGTGCGCAAGGAGGAAAACGAAAAGTGACTAGTAGCCACGACATCACTTGGTGTCCGATTGGAACGTACCATACCTTTCCGGAAAGGGAATTGTGCCAGGAACAAGATTTGTTGCTTTGCCACAAGCTGTGGGCTTTTTCGGGCTTTCACCAGAGAACCCTCTGGCATTACAATGCTACAAAGAATTGGAACTATAGGATGTTTTTCTCTATCATATCTATGGTCATTGCAGCTTTAGTTGAGATGAAAAGGCTCCAAACTGCTAGAGATTATGATCTGGTTGATCTGCCAAGTGCCACAATTCCAATGTGTATTTGGTGGTTGGTTCCTCAGTACTTTCTGTGTGGACTAGCCGATGTTTTCACCATGGTTGGTCTACAAGAGTTCTTCTATGATCATGTACCAAATGAATTAAGAAGCATGGGACTTGCCCTCTACCTCAGTATATTTGGTGTGGGATGCTTTTTGATCAACAACTTTCTTATTTCTATTATTGAGGAAGCAACCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

180

Amino Acids

20.99

Weight (kDa)

5.62

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 77 - 179 1.5e-14 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 36
AccI GTMKAC 1 cut(s) 406
AccIII TCCGGA 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 81
AfaI GTAC 3 cut(s) 98, 365, 432
AgsI TTSAA 1 cut(s) 17
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 2 cut(s) 157, 263
AluI AGCT 2 cut(s) 157, 263
Aor13HI TCCGGA 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 37
AsuHPI GGTGA 2 cut(s) 170, 385
BbvI GCAGC 1 cut(s) 272
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 2 cut(s) 424, 498
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 3 cut(s) 60, 294, 380
BfmI CTRYAG 1 cut(s) 223
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 365
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 284, 357
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 479
BsaBI GATNNNNATC 1 cut(s) 303
BsaJI CCNNGG 1 cut(s) 396
BsaWI WCCGGW 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 537
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 303
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 396
BseGI GGATG 2 cut(s) 234, 494
BseJI GATNNNNATC 1 cut(s) 303
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 2 cut(s) 374, 484
BseNI ACTGG 1 cut(s) 537
BseXI GCAGC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 468
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 5 cut(s) 28, 304, 313, 424, 498
Bsp19I CCATGG 1 cut(s) 396
BspCNI CTCAG 2 cut(s) 373, 483
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 2 cut(s) 284, 357
BspQI GCTCTTC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 1 cut(s) 537
BssECI CCNNGG 1 cut(s) 396
BssMI GATC 5 cut(s) 28, 304, 313, 424, 498
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 360, 470
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 234, 494
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 5 cut(s) 31, 307, 316, 427, 501
BstMBI GATC 5 cut(s) 28, 304, 313, 424, 498
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 1 cut(s) 272
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 234, 494
CfoI GCGC 1 cut(s) 37
Csp6I GTAC 3 cut(s) 97, 364, 431
CviAII CATG 3 cut(s) 397, 428, 451
CviJI RGCY 7 cut(s) 66, 157, 164, 174, 263, 283, 383
CviKI_1 RGCY 7 cut(s) 66, 157, 164, 174, 263, 283, 383
CviQI GTAC 3 cut(s) 97, 364, 431
DdeI CTNAG 2 cut(s) 360, 470
DpnI GATC 5 cut(s) 30, 306, 315, 426, 500
DpnII GATC 5 cut(s) 28, 304, 313, 424, 498
DraIII CACNNNGTG 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 3 cut(s) 400, 431, 454
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 1 cut(s) 468
FatI CATG 3 cut(s) 396, 427, 450
FbaI TGATCA 2 cut(s) 424, 498
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 2 cut(s) 241, 501
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 3 cut(s) 60, 294, 380
FspI TGCGCA 1 cut(s) 36
GlaI GCGC 1 cut(s) 36
GluI GCNGC 1 cut(s) 261
HapII CCGG 1 cut(s) 110
HhaI GCGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 400, 431, 454
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 170, 385
Hpy166II GTNNAC 2 cut(s) 377, 407
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 2 cut(s) 377, 407
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 360, 470
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 3 cut(s) 400, 431, 454
HspAI GCGC 1 cut(s) 35
Kpn2I TCCGGA 1 cut(s) 109
Ksp22I TGATCA 2 cut(s) 424, 498
Kzo9I GATC 5 cut(s) 28, 304, 313, 424, 498
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 6 cut(s) 113, 123, 140, 178, 194, 293
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 479
MaeI CTAG 3 cut(s) 60, 294, 380
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 55
MalI GATC 5 cut(s) 30, 306, 315, 426, 500
MboI GATC 5 cut(s) 28, 304, 313, 424, 498
MboII GAAGA 2 cut(s) 29, 409
MluCI AATT 5 cut(s) 11, 119, 214, 330, 440
MnlI CCTC 6 cut(s) 35, 200, 369, 473, 479, 520
MroI TCCGGA 1 cut(s) 109
MseI TTAA 1 cut(s) 443
MslI CAYNNNNRTG 2 cut(s) 201, 248
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NcoI CCATGG 1 cut(s) 396
NdeII GATC 5 cut(s) 28, 304, 313, 424, 498
NlaIII CATG 3 cut(s) 400, 431, 454
NlaIV GGNNCC 2 cut(s) 284, 357
NmuCI GTSAC 1 cut(s) 55
NsbI TGCGCA 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 284, 357
PsrI GAACNNNNNNTAC 2 cut(s) 85, 117
RsaI GTAC 3 cut(s) 98, 365, 432
RsaNI GTAC 3 cut(s) 97, 364, 431
RseI CAYNNNNRTG 2 cut(s) 201, 248
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 1 cut(s) 443
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 5 cut(s) 28, 304, 313, 424, 498
ScaI AGTACT 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 128
SetI ASST 5 cut(s) 98, 107, 159, 265, 471
SfaNI GCATC 1 cut(s) 479
SfcI CTRYAG 1 cut(s) 223
SmiMI CAYNNNNRTG 2 cut(s) 201, 248
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 5 cut(s) 11, 119, 214, 330, 440
SspMI CTAG 3 cut(s) 60, 294, 380
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 396
TaiI ACGT 1 cut(s) 98
TasI AATT 5 cut(s) 11, 119, 214, 330, 440
TatI WGTACW 1 cut(s) 363
Tru1I TTAA 1 cut(s) 443
Tru9I TTAA 1 cut(s) 443
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 260
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 290, 453
XcmI CCANNNNNNNNNTGG 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 3 cut(s) 60, 294, 380
ZrmI AGTACT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.