MD15G1406600.v1.1

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000191
Physical Location & Seq
Reverse (-)
50689751 .. 50690575
825 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1406600.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGCAACTTCTACCCGCCAATCCCCGGACCGGGACACCCAAACCCCCCTGCTAGACGACGGCGTCGAGGGCACCGTTGACCACAAAGGCCTCCCCGTTCACAGATCGAGATCAGGCGGCTGGCGTTCTGCTCGGTTCATAATCGGGGTGGAGCTGGCGGAGAGGTTTGCCTACTATGGAATCAGCTCCAACCTCATCACGTTTCTGACGGGGCCTTTGGGGCAGTCCACCGTCACAGCGGCTGAGAACGTCAACATATGGTCCGGAACGGCGTCGTTGCTCCCTTTACTCGGAGCCTTTGTCGCTGATTCTTTCCTTGGGCGCTACCGCACTATTGTTTTTGCTTCCCTACTCTACATTTTGGTACGTCTCCCTCTCTCTACAATTTTGGCACGTGACTATGTTGTTGGAGTTTTTAGCTCCTTTAAGTCCCACATCGGGGAACTCAAGGAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

153

Amino Acids

16.56

Weight (kDa)

8.09

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 263
AciI CCGC 5 cut(s) 16, 117, 158, 239, 328
AcvI CACGTG 1 cut(s) 395
AcyI GRCGYC 2 cut(s) 63, 272
AfaI GTAC 1 cut(s) 366
AfiI CCNNNNNNNGG 6 cut(s) 25, 30, 31, 290, 438, 439
AluBI AGCT 3 cut(s) 154, 186, 420
AluI AGCT 3 cut(s) 154, 186, 420
Alw26I GTCTC 1 cut(s) 374
AlwNI CAGNNNCTG 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 263
AoxI GGCC 2 cut(s) 88, 212
ArsI GACNNNNNNTTYG 2 cut(s) 199, 231
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 3 cut(s) 28, 212, 261
AsuC2I CCSGG 2 cut(s) 26, 32
AvaII GGWCC 2 cut(s) 28, 261
BaeGI GKGCMC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 71
BbrPI CACGTG 1 cut(s) 395
BceAI ACGGC 2 cut(s) 76, 285
BcnI CCSGG 2 cut(s) 26, 32
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 53
BfoI RGCGCY 1 cut(s) 325
BglI GCCNNNNNGGC 1 cut(s) 220
BisI GCNGC 2 cut(s) 118, 240
BlsI GCNGC 2 cut(s) 119, 241
Bme1390I CCNGG 2 cut(s) 26, 32
Bme18I GGWCC 2 cut(s) 28, 261
BmgT120I GGNCC 3 cut(s) 28, 212, 261
BmiI GGNNCC 3 cut(s) 73, 213, 295
BmrFI CCNGG 2 cut(s) 26, 32
BpuEI CTTGAG 1 cut(s) 431
BpuMI CCSGG 2 cut(s) 26, 32
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 109
BsaHI GRCGYC 2 cut(s) 63, 272
BsaJI CCNNGG 2 cut(s) 24, 316
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 6 cut(s) 25, 30, 31, 290, 438, 439
Bse8I GATNNNNATC 1 cut(s) 109
BseAI TCCGGA 1 cut(s) 263
BseDI CCNNGG 2 cut(s) 24, 316
BseJI GATNNNNATC 1 cut(s) 109
BseLI CCNNNNNNNGG 6 cut(s) 25, 30, 31, 290, 438, 439
BseMII CTCAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 74
BshFI GGCC 2 cut(s) 90, 214
BshNI GGYRCC 1 cut(s) 71
BsiSI CCGG 3 cut(s) 26, 31, 264
BslFI GGGAC 2 cut(s) 47, 415
BslI CCNNNNNNNGG 6 cut(s) 25, 30, 31, 290, 438, 439
BsmAI GTCTC 1 cut(s) 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 47, 415
BsnI GGCC 2 cut(s) 90, 214
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 263
Bsp143I GATC 2 cut(s) 104, 110
BspACI CCGC 5 cut(s) 16, 117, 158, 239, 328
BspANI GGCC 2 cut(s) 90, 214
BspCNI CTCAG 1 cut(s) 235
BspEI TCCGGA 1 cut(s) 263
BspLI GGNNCC 3 cut(s) 73, 213, 295
BspT107I GGYRCC 1 cut(s) 71
BssECI CCNNGG 2 cut(s) 24, 316
BssMI GATC 2 cut(s) 104, 110
BssNI GRCGYC 2 cut(s) 63, 272
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 76, 232
BstACI GRCGYC 2 cut(s) 63, 272
BstBAI YACGTR 1 cut(s) 395
BstC8I GCNNGC 2 cut(s) 122, 156
BstDEI CTNAG 1 cut(s) 243
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 2 cut(s) 107, 113
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 2 cut(s) 104, 110
BstMWI GCNNNNNNNGC 3 cut(s) 69, 220, 302
BstSCI CCNGG 2 cut(s) 24, 30
BstSLI GKGCMC 1 cut(s) 74
BsuRI GGCC 2 cut(s) 90, 214
Cac8I GCNNGC 2 cut(s) 122, 156
CaiI CAGNNNCTG 1 cut(s) 242
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 3 cut(s) 28, 212, 261
CpoI CGGWCCG 1 cut(s) 28
CseI GACGC 2 cut(s) 52, 261
Csp6I GTAC 1 cut(s) 365
CspI CGGWCCG 1 cut(s) 28
CviJI RGCY 8 cut(s) 90, 120, 154, 186, 214, 242, 296, 420
CviKI_1 RGCY 8 cut(s) 90, 120, 154, 186, 214, 242, 296, 420
CviQI GTAC 1 cut(s) 365
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 106, 112
DpnII GATC 2 cut(s) 104, 110
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
EciI GGCGGA 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 316
Eco147I AGGCCT 1 cut(s) 90
Eco47I GGWCC 2 cut(s) 28, 261
Eco72I CACGTG 1 cut(s) 395
EcoO109I RGGNCCY 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 374
FaiI YATR 5 cut(s) 140, 177, 257, 259, 402
FaqI GGGAC 2 cut(s) 47, 415
FauI CCCGC 1 cut(s) 23
FauNDI CATATG 1 cut(s) 257
Fnu4HI GCNGC 2 cut(s) 118, 240
Fsp4HI GCNGC 2 cut(s) 118, 240
FspBI CTAG 1 cut(s) 53
GlaI GCGC 1 cut(s) 323
GluI GCNGC 2 cut(s) 118, 240
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 2 cut(s) 90, 214
HapII CCGG 3 cut(s) 26, 31, 264
HgaI GACGC 2 cut(s) 52, 261
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 2 cut(s) 63, 272
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 2 cut(s) 79, 253
HindII GTYRAC 2 cut(s) 79, 253
HinfI GANTC 2 cut(s) 180, 308
HpaII CCGG 3 cut(s) 26, 31, 264
Hpy166II GTNNAC 4 cut(s) 79, 100, 228, 253
Hpy188I TCNGA 2 cut(s) 207, 293
Hpy188III TCNNGA 2 cut(s) 108, 264
Hpy8I GTNNAC 4 cut(s) 79, 100, 228, 253
Hpy99I CGWCG 3 cut(s) 62, 68, 277
HpyCH4III ACNGT 2 cut(s) 76, 232
HpyCH4IV ACGT 4 cut(s) 200, 249, 367, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 220, 302
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 4 cut(s) 200, 249, 367, 394
Hsp92I GRCGYC 2 cut(s) 63, 272
HspAI GCGC 1 cut(s) 322
Kpn2I TCCGGA 1 cut(s) 263
Kzo9I GATC 2 cut(s) 104, 110
LmnI GCTCC 5 cut(s) 151, 191, 285, 293, 425
LpnPI CCDG 7 cut(s) 39, 44, 62, 99, 106, 140, 277
MaeI CTAG 1 cut(s) 53
MaeII ACGT 4 cut(s) 200, 249, 367, 394
MaeIII GTNAC 2 cut(s) 232, 395
MalI GATC 2 cut(s) 106, 112
MboI GATC 2 cut(s) 104, 110
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 1 cut(s) 384
MmeI TCCRAC 2 cut(s) 213, 388
MnlI CCTC 5 cut(s) 61, 101, 156, 203, 384
MroI TCCGGA 1 cut(s) 263
MseI TTAA 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 3 cut(s) 26, 31, 264
MspR9I CCNGG 2 cut(s) 26, 32
MwoI GCNNNNNNNGC 3 cut(s) 69, 220, 302
NciI CCSGG 2 cut(s) 26, 32
NdeI CATATG 1 cut(s) 257
NdeII GATC 2 cut(s) 104, 110
NlaIV GGNNCC 3 cut(s) 73, 213, 295
NmuCI GTSAC 2 cut(s) 232, 395
PceI AGGCCT 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 72
PfeI GAWTC 2 cut(s) 180, 308
PflFI GACNNNGTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 119, 241
PmaCI CACGTG 1 cut(s) 395
PmlI CACGTG 1 cut(s) 395
Ppu21I YACGTR 1 cut(s) 395
PspCI CACGTG 1 cut(s) 395
PspN4I GGNNCC 3 cut(s) 73, 213, 295
PspPI GGNCC 3 cut(s) 28, 212, 261
PstNI CAGNNNCTG 1 cut(s) 242
PsyI GACNNNGTC 1 cut(s) 62
RsaI GTAC 1 cut(s) 366
RsaNI GTAC 1 cut(s) 365
Rsr2I CGGWCCG 1 cut(s) 28
RsrII CGGWCCG 1 cut(s) 28
SaqAI TTAA 1 cut(s) 426
SatI GCNGC 2 cut(s) 118, 240
Sau3AI GATC 2 cut(s) 104, 110
Sau96I GGNCC 3 cut(s) 28, 212, 261
ScrFI CCNGG 2 cut(s) 26, 32
SduI GDGCHC 1 cut(s) 74
SetI ASST 9 cut(s) 156, 167, 188, 195, 203, 252, 370, 397, 422
SinI GGWCC 2 cut(s) 28, 261
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 1 cut(s) 384
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 5 cut(s) 16, 117, 158, 239, 328
SspMI CTAG 1 cut(s) 53
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 24, 30
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 76, 232
TaiI ACGT 4 cut(s) 203, 252, 370, 397
TaqI TCGA 2 cut(s) 66, 107
TasI AATT 1 cut(s) 384
TauI GCSGC 2 cut(s) 120, 242
TfiI GAWTC 2 cut(s) 180, 308
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TseFI GTSAC 2 cut(s) 232, 395
Tsp45I GTSAC 2 cut(s) 232, 395
TspDTI ATGAA 1 cut(s) 127
Tth111I GACNNNGTC 1 cut(s) 62
VpaK11BI GGWCC 2 cut(s) 28, 261
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.