Rorug07G0243200

Protein NRT1 PTR FAMILY 5.10-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
22438957 .. 22439946
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0243200.1

Sequence Viewer

Length: 324 bp
ATGGGCGATTCTGGGTTTGATGTTTCAGGGTTGAATCTCCTCCCAGAGGAGGTTGCAGATCTTGCTGGCTTTGATTCCAACACAAGGGCTTCAGATGCTGATGGAGTTCAAGATAAGATTATGAAGAAGAAAGGCTGCTGGCGGCACATCTGGAGAAGGCCTTCTTCATTCCTAAGAAGAAAAGATCAAAATGGGAGCTTGTTGTCTTCGATTGGAAATTCAACCAACATTCAGCGGCACCAGTGCTCAGTGAAGAAAGAAGGTAGGGAAAATTTGGCTAAACAAAAAGGGTTGACAGTGTCAACAAACATGGAATTCTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.89

Weight (kDa)

9.34

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 237
AciI CCGC 2 cut(s) 142, 235
AcsI RAATTY 3 cut(s) 217, 271, 314
AcuI CTGAAG 1 cut(s) 75
AfiI CCNNNNNNNGG 3 cut(s) 46, 49, 84
AgsI TTSAA 3 cut(s) 34, 110, 222
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 98
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 3 cut(s) 217, 271, 314
Asp700I GAANNNNTTC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 237
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 248
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 95
BfaI CTAG 1 cut(s) 322
BglII AGATCT 1 cut(s) 58
BisI GCNGC 3 cut(s) 136, 143, 236
BlsI GCNGC 3 cut(s) 137, 144, 237
BmiI GGNNCC 1 cut(s) 239
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 198
BpmI CTGGAG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 49, 84
Bse1I ACTGG 1 cut(s) 241
BseLI CCNNNNNNNGG 3 cut(s) 46, 49, 84
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 1 cut(s) 241
BseRI GAGGAG 2 cut(s) 29, 62
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 237
BsiHKAI GWGCWC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 46, 49, 84
BsnI GGCC 1 cut(s) 160
Bsp1286I GDGCHC 1 cut(s) 248
Bsp143I GATC 2 cut(s) 58, 184
BspACI CCGC 2 cut(s) 142, 235
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 239
BspT107I GGYRCC 1 cut(s) 237
BsrI ACTGG 1 cut(s) 241
BssMI GATC 2 cut(s) 58, 184
Bst4CI ACNGT 1 cut(s) 298
BstAPI GCANNNNNTGC 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 67, 140
BstDEI CTNAG 2 cut(s) 173, 247
BstENI CCTNNNNNAGG 1 cut(s) 44
BstKTI GATC 2 cut(s) 61, 187
BstMBI GATC 2 cut(s) 58, 184
BstMWI GCNNNNNNNGC 2 cut(s) 62, 95
BstV1I GCAGC 1 cut(s) 122
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 1 cut(s) 160
BtsIMutI CAGTG 3 cut(s) 248, 255, 303
Cac8I GCNNGC 2 cut(s) 67, 140
CaiI CAGNNNCTG 1 cut(s) 98
CviAII CATG 1 cut(s) 310
CviJI RGCY 6 cut(s) 69, 89, 135, 160, 198, 278
CviKI_1 RGCY 6 cut(s) 69, 89, 135, 160, 198, 278
DdeI CTNAG 2 cut(s) 173, 247
DpnI GATC 2 cut(s) 60, 186
DpnII GATC 2 cut(s) 58, 184
Eco147I AGGCCT 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 75
EcoNI CCTNNNNNAGG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 314
FaeI CATG 1 cut(s) 313
FaiI YATR 2 cut(s) 122, 311
FalI AAGNNNNNCTT 2 cut(s) 148, 180
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 136, 143, 236
Fsp4HI GCNGC 3 cut(s) 136, 143, 236
FspBI CTAG 1 cut(s) 322
GluI GCNGC 3 cut(s) 136, 143, 236
GsuI CTGGAG 1 cut(s) 172
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 1 cut(s) 313
HincII GTYRAC 2 cut(s) 294, 303
HindII GTYRAC 2 cut(s) 294, 303
HinfI GANTC 3 cut(s) 8, 34, 74
Hpy166II GTNNAC 2 cut(s) 294, 303
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 110, 151
Hpy8I GTNNAC 2 cut(s) 294, 303
HpyAV CCTTC 3 cut(s) 150, 171, 254
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4V TGCA 1 cut(s) 56
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 95
HpyF3I CTNAG 2 cut(s) 173, 247
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 2 cut(s) 58, 184
LmnI GCTCC 1 cut(s) 195
LpnPI CCDG 6 cut(s) 12, 51, 57, 124, 136, 254
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 322
MalI GATC 2 cut(s) 60, 186
MboI GATC 2 cut(s) 58, 184
MboII GAAGA 6 cut(s) 136, 139, 156, 189, 198, 265
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 248
MluCI AATT 3 cut(s) 217, 271, 314
MmeI TCCRAC 1 cut(s) 102
MnlI CCTC 3 cut(s) 40, 43, 50
MroXI GAANNNNTTC 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 235
MwoI GCNNNNNNNGC 2 cut(s) 62, 95
NdeII GATC 2 cut(s) 58, 184
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 1 cut(s) 239
PceI AGGCCT 1 cut(s) 160
PdmI GAANNNNTTC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 8, 34, 74
PflFI GACNNNGTC 1 cut(s) 298
PkrI GCNGC 3 cut(s) 137, 144, 237
PspN4I GGNNCC 1 cut(s) 239
PstNI CAGNNNCTG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 58
PsyI GACNNNGTC 1 cut(s) 298
SatI GCNGC 3 cut(s) 136, 143, 236
Sau3AI GATC 2 cut(s) 58, 184
SduI GDGCHC 1 cut(s) 248
SetI ASST 3 cut(s) 54, 200, 265
SfaNI GCATC 1 cut(s) 85
Sse9I AATT 3 cut(s) 217, 271, 314
SseBI AGGCCT 1 cut(s) 160
SsiI CCGC 2 cut(s) 142, 235
SspMI CTAG 1 cut(s) 322
StuI AGGCCT 1 cut(s) 160
TaaI ACNGT 1 cut(s) 298
TaqI TCGA 1 cut(s) 209
TasI AATT 3 cut(s) 217, 271, 314
TauI GCSGC 2 cut(s) 145, 238
TfiI GAWTC 3 cut(s) 8, 34, 74
TscAI CASTG 3 cut(s) 248, 255, 303
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 137, 156
TspRI CASTG 3 cut(s) 248, 255, 303
Tth111I GACNNNGTC 1 cut(s) 298
XagI CCTNNNNNAGG 1 cut(s) 44
XapI RAATTY 3 cut(s) 217, 271, 314
XmnI GAANNNNTTC 1 cut(s) 160
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.