Rh6CG311000

Peptide transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Forward (+)
49560683 .. 49562663
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG311000.1

Sequence Viewer

Length: 927 bp
ATGGAAAAGGTAGAGGAGAAAGGGGCTTCATATGGAAGAGAGGACTACACACAAGATGGGACTGTGGACCTCCAGGGGAGACCCGTTTTCAGATCAAACACTGGCAGATGGAGAGCTTGTTCCTTCATTGTAGGGTATGAGGTGTTTGAGAGGATGGCATATTATGGAATTGCATCAAACCTGGTGGTGTATATGACAACGAAGCTGCACGAAGGCACAGTGACCTCTTCAAATAACGTCACAAACTGGGTTGGGACGGTGTGGATGACACCCCTTTTGGGAGCTTATATTGCAGATGCTCATCTCGGCCGATACTGGACTTTTGTCATTGCCTCCGCCATATATCTTGTGGGAATGTCCTTATTGACGCTAGCAGTGTCACTCCCTGCCCTAAGACCACCATCATGCGACCACGGAATTAAACTTGAAGATTGTGAGAGAAGAGCCTCCCCATTCCAAGTGGGCATATTCTACTGTGGATTGTACATCATTGCACTCGGAACTGGTGGTACCAAGCCAAACATCTCAACCATGGGTGCAGACCAATTTGATGAGTTTGAGCCTAAAGAGAGGATCCAAAAACTCTCCTTCTTCAACTGGTGGATGTTCAGCATTTTCTTTGGCACACTTTTCTCAAACACCATCTTGATTTACATTCAAGACAATGTGGGGTGGGCACTTGGCTATGGACTTCCAACAATTGGCCTTGCACTTTCCATTTTGGTGTTTTTGGTGGGTACTAGGTTTTATAGGCACAAATTGCCTTCAGAGAGTCCCTTCAGTAGGATAGCTCATGTGCTTGTGGCGTTTATAAGGAAGTGGAGGGTTCCTGTCCCAGATGACCCAAAGGAGCTTCATGAGCTGAGCTTGGAAGAGTACACAAACTCCGAGAAATTCAGAATTGATCACTCCCCTTCATTACGGTAA

Protein Analysis

308

Amino Acids

34.9

Weight (kDa)

6.66

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 105 - 296 7.1e-53 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 812
Acc65I GGTACC 1 cut(s) 509
AccB1I GGYRCC 1 cut(s) 509
AccB7I CCANNNNNTGG 1 cut(s) 701
AciI CCGC 1 cut(s) 336
AclWI GGATC 2 cut(s) 568, 581
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 893
AcuI CTGAAG 2 cut(s) 750, 763
AfaI GTAC 4 cut(s) 485, 511, 739, 878
AfiI CCNNNNNNNGG 3 cut(s) 278, 701, 783
AgsI TTSAA 4 cut(s) 231, 428, 595, 659
AjnI CCWGG 2 cut(s) 72, 180
AloI GAACNNNNNNTCC 2 cut(s) 103, 135
AluBI AGCT 7 cut(s) 116, 205, 284, 791, 853, 862, 867
AluI AGCT 7 cut(s) 116, 205, 284, 791, 853, 862, 867
Alw26I GTCTC 1 cut(s) 73
AlwI GGATC 2 cut(s) 568, 581
AoxI GGCC 2 cut(s) 307, 703
ApeKI GCWGC 1 cut(s) 205
ApoI RAATTY 1 cut(s) 893
ArsI GACNNNNNNTTYG 2 cut(s) 259, 291
Asp718I GGTACC 1 cut(s) 509
AspS9I GGNCC 1 cut(s) 67
AsuNHI GCTAGC 1 cut(s) 370
AvaII GGWCC 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 679
BamHI GGATCC 1 cut(s) 573
BanI GGYRCC 1 cut(s) 509
BbvI GCAGC 1 cut(s) 192
BccI CCATC 5 cut(s) 50, 102, 148, 409, 650
BciT130I CCWGG 2 cut(s) 74, 182
BclI TGATCA 1 cut(s) 904
BcoDI GTCTC 1 cut(s) 73
BfaI CTAG 2 cut(s) 371, 741
BisI GCNGC 1 cut(s) 206
BlpI GCTNAGC 1 cut(s) 863
BlsI GCNGC 1 cut(s) 207
Bme1390I CCNGG 2 cut(s) 74, 182
Bme18I GGWCC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 67
BmiI GGNNCC 3 cut(s) 511, 575, 828
BmrFI CCNGG 2 cut(s) 74, 182
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 182, 286
BmtI GCTAGC 1 cut(s) 374
BmuI ACTGGG 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 863
BsaBI GATNNNNATC 1 cut(s) 300
BsaI GGTCTC 1 cut(s) 73
BsaJI CCNNGG 3 cut(s) 73, 412, 531
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 869, 899
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 701, 783
Bse1I ACTGG 5 cut(s) 106, 251, 320, 508, 602
Bse3DI GCAATG 2 cut(s) 327, 489
Bse8I GATNNNNATC 1 cut(s) 300
BseBI CCWGG 2 cut(s) 74, 182
BseDI CCNNGG 3 cut(s) 73, 412, 531
BseGI GGATG 3 cut(s) 159, 270, 609
BseJI GATNNNNATC 1 cut(s) 300
BseLI CCNNNNNNNGG 3 cut(s) 278, 701, 783
BseMI GCAATG 2 cut(s) 327, 489
BseMII CTCAG 1 cut(s) 854
BseNI ACTGG 5 cut(s) 106, 251, 320, 508, 602
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 679
BseX3I CGGCCG 1 cut(s) 307
BseXI GCAGC 1 cut(s) 192
BsgI GTGCAG 2 cut(s) 191, 558
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 2 cut(s) 309, 705
BshNI GGYRCC 1 cut(s) 509
BsiEI CGRYCG 1 cut(s) 310
BslFI GGGAC 4 cut(s) 73, 268, 759, 818
BslI CCNNNNNNNGG 3 cut(s) 278, 701, 783
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 4 cut(s) 73, 268, 759, 818
BsnI GGCC 2 cut(s) 309, 705
Bso31I GGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 679
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 3 cut(s) 92, 573, 904
Bsp1720I GCTNAGC 1 cut(s) 863
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 1 cut(s) 336
BspANI GGCC 2 cut(s) 309, 705
BspCNI CTCAG 1 cut(s) 855
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 3 cut(s) 511, 575, 828
BspOI GCTAGC 1 cut(s) 374
BspPI GGATC 2 cut(s) 568, 581
BspQI GCTCTTC 1 cut(s) 436
BspT107I GGYRCC 1 cut(s) 509
BspTNI GGTCTC 1 cut(s) 73
BsrDI GCAATG 2 cut(s) 327, 489
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 5 cut(s) 106, 251, 320, 508, 602
BssECI CCNNGG 3 cut(s) 73, 412, 531
BssMI GATC 3 cut(s) 92, 573, 904
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 2 cut(s) 74, 182
Bst4CI ACNGT 5 cut(s) 64, 220, 259, 476, 924
Bst6I CTCTTC 4 cut(s) 31, 232, 436, 867
BstAPI GCANNNNNTGC 1 cut(s) 760
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 2 cut(s) 392, 863
BstDSI CCRYGG 2 cut(s) 412, 531
BstENI CCTNNNNNAGG 1 cut(s) 781
BstF5I GGATG 3 cut(s) 159, 270, 609
BstKTI GATC 3 cut(s) 95, 576, 907
BstMAI GTCTC 1 cut(s) 73
BstMBI GATC 3 cut(s) 92, 573, 904
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 3 cut(s) 290, 760, 859
BstNI CCWGG 2 cut(s) 74, 182
BstPAI GACNNNNGTC 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 72, 180
BstSLI GKGCMC 1 cut(s) 679
BstV1I GCAGC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 573
BstYI RGATCY 1 cut(s) 573
BstZI CGGCCG 1 cut(s) 307
BsuRI GGCC 2 cut(s) 309, 705
BtgI CCRYGG 2 cut(s) 412, 531
BtsCI GGATG 3 cut(s) 159, 270, 609
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 3 cut(s) 99, 225, 381
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 1 cut(s) 856
Cfr13I GGNCC 1 cut(s) 67
CseI GACGC 1 cut(s) 376
CsiI ACCWGGT 1 cut(s) 180
Csp6I GTAC 4 cut(s) 484, 510, 738, 877
CspCI CAANNNNNGTGG 2 cut(s) 165, 200
CviAII CATG 4 cut(s) 405, 532, 794, 857
CviQI GTAC 4 cut(s) 484, 510, 738, 877
DdeI CTNAG 2 cut(s) 392, 863
DpnI GATC 3 cut(s) 94, 575, 906
DpnII GATC 3 cut(s) 92, 573, 904
EaeI YGGCCR 1 cut(s) 307
EagI CGGCCG 1 cut(s) 307
Eam1104I CTCTTC 4 cut(s) 31, 232, 436, 867
EarI CTCTTC 4 cut(s) 31, 232, 436, 867
EciI GGCGGA 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 67
Eco52I CGGCCG 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 750, 763
EcoNI CCTNNNNNAGG 1 cut(s) 781
EcoRII CCWGG 2 cut(s) 72, 180
EcoT14I CCWWGG 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 4 cut(s) 408, 535, 797, 860
FaqI GGGAC 4 cut(s) 73, 268, 759, 818
FatI CATG 4 cut(s) 404, 531, 793, 856
FauNDI CATATG 1 cut(s) 31
FbaI TGATCA 1 cut(s) 904
Fnu4HI GCNGC 1 cut(s) 206
FokI GGATG 3 cut(s) 166, 277, 616
Fsp4HI GCNGC 1 cut(s) 206
FspBI CTAG 2 cut(s) 371, 741
GluI GCNGC 1 cut(s) 206
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 2 cut(s) 309, 705
HgaI GACGC 1 cut(s) 376
Hin1II CATG 4 cut(s) 408, 535, 797, 860
HinfI GANTC 1 cut(s) 772
Hpy166II GTNNAC 2 cut(s) 67, 879
Hpy188I TCNGA 5 cut(s) 92, 500, 769, 889, 899
Hpy188III TCNNGA 3 cut(s) 646, 659, 857
Hpy8I GTNNAC 2 cut(s) 67, 879
HpyAV CCTTC 6 cut(s) 133, 206, 598, 774, 787, 924
HpyCH4III ACNGT 5 cut(s) 64, 220, 259, 476, 924
HpyCH4IV ACGT 1 cut(s) 237
HpyCH4V TGCA 6 cut(s) 173, 208, 293, 494, 539, 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 760, 859
HpyF3I CTNAG 2 cut(s) 392, 863
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 4 cut(s) 408, 535, 797, 860
KpnI GGTACC 1 cut(s) 513
Ksp22I TGATCA 1 cut(s) 904
Kzo9I GATC 3 cut(s) 92, 573, 904
LguI GCTCTTC 1 cut(s) 436
LmnI GCTCC 2 cut(s) 281, 850
Lsp1109I GCAGC 1 cut(s) 192
LweI GCATC 2 cut(s) 182, 286
MabI ACCWGGT 1 cut(s) 180
MaeI CTAG 2 cut(s) 371, 741
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 3 cut(s) 220, 238, 378
MalI GATC 3 cut(s) 94, 575, 906
MboI GATC 3 cut(s) 92, 573, 904
MboII GAAGA 6 cut(s) 48, 219, 440, 453, 583, 884
MfeI CAATTG 1 cut(s) 699
MflI RGATCY 1 cut(s) 573
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 7 cut(s) 168, 417, 545, 699, 758, 893, 900
MlyI GAGTC 1 cut(s) 781
MmeI TCCRAC 1 cut(s) 719
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 2 cut(s) 403, 722
MspR9I CCNGG 2 cut(s) 74, 182
MunI CAATTG 1 cut(s) 699
MvaI CCWGG 2 cut(s) 74, 182
MwoI GCNNNNNNNGC 3 cut(s) 290, 760, 859
NcoI CCATGG 1 cut(s) 531
NdeI CATATG 1 cut(s) 31
NdeII GATC 3 cut(s) 92, 573, 904
NheI GCTAGC 1 cut(s) 370
NlaIII CATG 4 cut(s) 408, 535, 797, 860
NlaIV GGNNCC 3 cut(s) 511, 575, 828
NmeAIII GCCGAG 1 cut(s) 285
NmuCI GTSAC 3 cut(s) 220, 238, 378
PagI TCATGA 1 cut(s) 856
PciSI GCTCTTC 1 cut(s) 436
PflMI CCANNNNNTGG 1 cut(s) 701
PkrI GCNGC 1 cut(s) 207
PleI GAGTC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 780
PshAI GACNNNNGTC 1 cut(s) 323
PsiI TTATAA 1 cut(s) 812
Psp6I CCWGG 2 cut(s) 72, 180
PspGI CCWGG 2 cut(s) 72, 180
PspN4I GGNNCC 3 cut(s) 511, 575, 828
PspPI GGNCC 1 cut(s) 67
PsrI GAACNNNNNNTAC 2 cut(s) 493, 525
PsuI RGATCY 1 cut(s) 573
RsaI GTAC 4 cut(s) 485, 511, 739, 878
RsaNI GTAC 4 cut(s) 484, 510, 738, 877
RseI CAYNNNNRTG 2 cut(s) 403, 722
SapI GCTCTTC 1 cut(s) 436
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 1 cut(s) 206
Sau3AI GATC 3 cut(s) 92, 573, 904
Sau96I GGNCC 1 cut(s) 67
SchI GAGTC 1 cut(s) 781
ScrFI CCNGG 2 cut(s) 74, 182
SduI GDGCHC 1 cut(s) 679
SexAI ACCWGGT 1 cut(s) 180
SfaNI GCATC 2 cut(s) 182, 286
SinI GGWCC 1 cut(s) 67
SmiMI CAYNNNNRTG 2 cut(s) 403, 722
Sse9I AATT 7 cut(s) 168, 417, 545, 699, 758, 893, 900
SsiI CCGC 1 cut(s) 336
SspMI CTAG 2 cut(s) 371, 741
StyD4I CCNGG 2 cut(s) 72, 180
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 5 cut(s) 64, 220, 259, 476, 924
TaiI ACGT 1 cut(s) 240
TasI AATT 7 cut(s) 168, 417, 545, 699, 758, 893, 900
TatI WGTACW 2 cut(s) 483, 876
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 3 cut(s) 106, 225, 381
TseFI GTSAC 3 cut(s) 220, 238, 378
TseI GCWGC 1 cut(s) 205
Tsp45I GTSAC 3 cut(s) 220, 238, 378
TspDTI ATGAA 4 cut(s) 18, 115, 845, 906
TspGWI ACGGA 1 cut(s) 429
TspRI CASTG 3 cut(s) 106, 225, 381
Van91I CCANNNNNTGG 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 67
XagI CCTNNNNNAGG 1 cut(s) 781
XapI RAATTY 1 cut(s) 893
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XspI CTAG 2 cut(s) 371, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.