Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Forward (+)

27311609 .. 27312329

Gene Structure 721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G022320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGAATGATTCTGATTCTTCGGGCTCAGAAGCCGAGCACCGCAGGCAGCAGTATATTCAGCCCAGTTCTTACAACATCCCATAGCCTCAAAGTTACAGTGAATGAATGCTGTGACATATTGGCATACTATGGGATGAGCTCAAATCTGGTCATTTATTTCAAGCAACATCTGCACCAAAGCAGTGCTAAAGCAACTCAAATTGGAGTGGAACATGTTATCTCACTCCCTTACTTGGAGCATTTTTGGCTGATGCCTATTTGGAAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

90

Amino Acids

10.12

Weight (kDa)

8.67

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw21I	GWGCWC	2 cut(s)	41, 143
ApeKI	GCWGC	1 cut(s)	48
BanII	GRGCYC	2 cut(s)	28, 143
Bbv12I	GWGCWC	2 cut(s)	41, 143
BbvI	GCAGC	1 cut(s)	60
BisI	GCNGC	1 cut(s)	49
BlsI	GCNGC	1 cut(s)	50
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	77, 141
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	60
BsgI	GTGCAG	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	41, 143
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmI	GAATGC	1 cut(s)	113
Bsp1286I	GDGCHC	3 cut(s)	28, 41, 143
BspACI	CCGC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	100
BstAPI	GCANNNNNTGC	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	2 cut(s)	77, 141
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 172, 247
BstNSI	RCATGY	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	60
BtsCI	GGATG	2 cut(s)	77, 141
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	105, 190
Cac8I	GCNNGC	1 cut(s)	46
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	6 cut(s)	26, 34, 63, 87, 141, 250
CviKI_1	RGCY	6 cut(s)	26, 34, 63, 87, 141, 250
DdeI	CTNAG	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	141
Eco24I	GRGCYC	2 cut(s)	28, 143
Eco53kI	GAGCTC	1 cut(s)	141
EcoICRI	GAGCTC	1 cut(s)	141
EcoT38I	GRGCYC	2 cut(s)	28, 143
FaeI	CATG	1 cut(s)	218
FaiI	YATR	7 cut(s)	56, 84, 119, 127, 132, 216, 271
FatI	CATG	1 cut(s)	214
Fnu4HI	GCNGC	1 cut(s)	49
FokI	GGATG	2 cut(s)	64, 148
FriOI	GRGCYC	2 cut(s)	28, 143
Fsp4HI	GCNGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	218
HinfI	GANTC	2 cut(s)	10, 16
Hpy188I	TCNGA	2 cut(s)	15, 30
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 172, 247
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	218
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	3 cut(s)	30, 78, 134
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	243
MaeIII	GTNAC	2 cut(s)	94, 113
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	3 cut(s)	28, 41, 143
MluCI	AATT	1 cut(s)	201
MnlI	CCTC	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	45, 172, 247
NlaIII	CATG	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	218
PciI	ACATGT	1 cut(s)	214
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	2 cut(s)	10, 16
PkrI	GCNGC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	214
Psp124BI	GAGCTC	1 cut(s)	143
SacI	GAGCTC	1 cut(s)	143
SatI	GCNGC	1 cut(s)	49
SduI	GDGCHC	3 cut(s)	28, 41, 143
SetI	ASST	1 cut(s)	143
SfaNI	GCATC	1 cut(s)	243
SgeI	CNNG	8 cut(s)	35, 48, 57, 77, 161, 175, 227, 247
Sse9I	AATT	1 cut(s)	201
SsiI	CCGC	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	143
TaaI	ACNGT	1 cut(s)	100
TasI	AATT	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	10, 16
TscAI	CASTG	2 cut(s)	105, 190
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	48
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	1 cut(s)	120
TspRI	CASTG	2 cut(s)	105, 190
XceI	RCATGY	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.