RchiOBHm_Chr7g0227741

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000191
Physical Location & Seq
Reverse (-)
50981286 .. 50981702
417 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20399

Sequence Viewer

Length: 417 bp
ATGAAAAGGCTCCAAACTGCCAAAGATTATGATCTGGTTGATTTGCCAAGTGCCACAATTCCAATGAGTATTTGGTGGTTGGTTCCTCAGTACTTTTTGTATGGACTAGCTGATGTTTTCACCATTGTTGGTCTACAAGAGTTCCTCTATGATCAGGTACCAAATGAATTAAGAAGCATGGGAATTGCTCTCTACCTCAGTATATTAGGTGTGGGAAACTTTCTGAGCAGCTTTCTTATCTCTATTATTGAGGAAGCAACCAGTTGGGGAGGCCACACTAGCTGGTTTTCCGACAACCTTAATCTTGCACATCTTGATTACTTTTACTGGTTACTAGCAGCACTCTGTGGAGTAGGATTGTTGGCCTACATGTATTTTACAAAATCTTACATTTACAATAGGGCTAGTACAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

138

Amino Acids

15.76

Weight (kDa)

4.64

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 2 - 95 2.2e-12 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 157
AccB1I GGYRCC 1 cut(s) 157
AccI GTMKAC 1 cut(s) 133
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 3 cut(s) 92, 159, 409
AflIII ACRYGT 1 cut(s) 369
AluBI AGCT 3 cut(s) 110, 231, 282
AluI AGCT 3 cut(s) 110, 231, 282
AoxI GGCC 2 cut(s) 271, 363
ApeKI GCWGC 2 cut(s) 228, 338
Asp718I GGTACC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 112
BanI GGYRCC 1 cut(s) 157
BbvI GCAGC 2 cut(s) 240, 350
BclI TGATCA 1 cut(s) 151
BfaI CTAG 4 cut(s) 107, 279, 335, 405
BisI GCNGC 2 cut(s) 229, 339
BlsI GCNGC 2 cut(s) 230, 340
BmcAI AGTACT 1 cut(s) 92
BmiI GGNNCC 3 cut(s) 11, 84, 159
BsaBI GATNNNNATC 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 261, 332
Bse8I GATNNNNATC 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 30
BseMII CTCAG 3 cut(s) 101, 211, 215
BseNI ACTGG 2 cut(s) 261, 332
BseXI GCAGC 2 cut(s) 240, 350
BshFI GGCC 2 cut(s) 273, 365
BshNI GGYRCC 1 cut(s) 157
BsnI GGCC 2 cut(s) 273, 365
Bsp143I GATC 2 cut(s) 31, 151
BspANI GGCC 2 cut(s) 273, 365
BspCNI CTCAG 3 cut(s) 100, 210, 216
BspLI GGNNCC 3 cut(s) 11, 84, 159
BspT107I GGYRCC 1 cut(s) 157
BsrI ACTGG 2 cut(s) 261, 332
BssMI GATC 2 cut(s) 31, 151
BstDEI CTNAG 3 cut(s) 87, 197, 224
BstKTI GATC 2 cut(s) 34, 154
BstMBI GATC 2 cut(s) 31, 151
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 373
BstV1I GCAGC 2 cut(s) 240, 350
BsuRI GGCC 2 cut(s) 273, 365
Csp6I GTAC 3 cut(s) 91, 158, 408
CviAII CATG 2 cut(s) 178, 370
CviJI RGCY 7 cut(s) 10, 110, 231, 273, 282, 365, 404
CviKI_1 RGCY 7 cut(s) 10, 110, 231, 273, 282, 365, 404
CviQI GTAC 3 cut(s) 91, 158, 408
DdeI CTNAG 3 cut(s) 87, 197, 224
DpnI GATC 2 cut(s) 33, 153
DpnII GATC 2 cut(s) 31, 151
DraIII CACNNNGTG 1 cut(s) 347
FaeI CATG 2 cut(s) 181, 373
FaiI YATR 7 cut(s) 30, 102, 150, 179, 203, 371, 415
FatI CATG 2 cut(s) 177, 369
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 229, 339
Fsp4HI GCNGC 2 cut(s) 229, 339
FspBI CTAG 4 cut(s) 107, 279, 335, 405
GluI GCNGC 2 cut(s) 229, 339
HaeIII GGCC 2 cut(s) 273, 365
Hin1II CATG 2 cut(s) 181, 373
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 225, 292
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 134
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpyF3I CTNAG 3 cut(s) 87, 197, 224
Hsp92II CATG 2 cut(s) 181, 373
KpnI GGTACC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 2 cut(s) 31, 151
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 20, 140, 268, 274, 313
Lsp1109I GCAGC 2 cut(s) 240, 350
MaeI CTAG 4 cut(s) 107, 279, 335, 405
MaeIII GTNAC 1 cut(s) 330
MalI GATC 2 cut(s) 33, 153
MboI GATC 2 cut(s) 31, 151
MluCI AATT 3 cut(s) 57, 167, 183
MmeI TCCRAC 1 cut(s) 315
MnlI CCTC 5 cut(s) 96, 155, 206, 244, 263
MseI TTAA 2 cut(s) 170, 300
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeII GATC 2 cut(s) 31, 151
NlaIII CATG 2 cut(s) 181, 373
NlaIV GGNNCC 3 cut(s) 11, 84, 159
NspI RCATGY 1 cut(s) 373
PciI ACATGT 1 cut(s) 369
PkrI GCNGC 2 cut(s) 230, 340
PscI ACATGT 1 cut(s) 369
PspN4I GGNNCC 3 cut(s) 11, 84, 159
RsaI GTAC 3 cut(s) 92, 159, 409
RsaNI GTAC 3 cut(s) 91, 158, 408
SaqAI TTAA 2 cut(s) 170, 300
SatI GCNGC 2 cut(s) 229, 339
Sau3AI GATC 2 cut(s) 31, 151
ScaI AGTACT 1 cut(s) 92
SetI ASST 7 cut(s) 112, 159, 198, 211, 233, 284, 300
Sse9I AATT 3 cut(s) 57, 167, 183
SspMI CTAG 4 cut(s) 107, 279, 335, 405
TasI AATT 3 cut(s) 57, 167, 183
TatI WGTACW 2 cut(s) 90, 407
Tru1I TTAA 2 cut(s) 170, 300
Tru9I TTAA 2 cut(s) 170, 300
TseI GCWGC 2 cut(s) 228, 338
TspDTI ATGAA 2 cut(s) 17, 180
XceI RCATGY 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 4 cut(s) 107, 279, 335, 405
ZrmI AGTACT 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.