RchiOBHm_Chr7g0227721

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000191
Physical Location & Seq
Reverse (-)
50968888 .. 50969952
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20397

Sequence Viewer

Length: 846 bp
ATGGCAATCCAATTTGAAGAGCAACTTGATCGTGCAAAAGGAGGAAAACGAAAAGTGACTAGTAGCCACGACATCGCTCGTTGTCCGATTGGAACGTTCCATACCTTTCCGGAAAGGGAATTGAGCCAGGAACAGGACTTGTGGCTTAGCCACAAGCTGTGGGCTTTTTCGAGCTTTCGGGACTCCAGAACCCTTTGTTTAGATTTATCGCTTGTAAACCTAGTTTATCATTCCAACTGCGTCAAGTCATTTATCTGCCCTGCCATAATGATGATCATACCCATTTATGACCGCATTTTTGTTCCCATGGCAAGAGCTTTCACCAGAGAACCCTCTGGCATTACAATGCTACAAAGAATTGGAACTGGAATGTTTTTCTCTATCATATCTATGGTCGTTACAGCTTTAGTTGAGATGAAAAGGCTCCAAACTGCCAGAGATTATGATCTGGTTGATCTGCCAAGTGCCACAATTCCAATGAGTATTTGGTGGTTGGTTCCTCAGTACTTTCTGTATGGACTAGCCGATGTTTTCACCATGGTTGGTCTACAAGAGTTCTTCTATGATCAGGTACCAAATGAATTAAGAAGCATGGGACTTTCCTTCTACCTCAGTATATTTGGTGTGGGATGCTTTCTGATCAGCAACTTTCTTATTTCTATTATTAAGGAAGCAACCAGTTGGGGAGGCCACACTAGCTGGTTTTCTGATAACCTTAATCTTACAGATCTTGATTACTTTTACTGGTTATTAGCAGCACTTAGTGCAGTAGGATTGTTGGCCTACATGTACTTTGCAAAATCTTACATTTATAACAGGGCTAGTACAATATCCACACAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

281

Amino Acids

32.23

Weight (kDa)

6.2

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 83 - 234 4.2e-28 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 813
Acc65I GGTACC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 571
AccI GTMKAC 1 cut(s) 547
AccIII TCCGGA 1 cut(s) 109
AciI CCGC 1 cut(s) 292
AclI AACGTT 1 cut(s) 95
AdeI CACNNNGTG 1 cut(s) 764
AfaI GTAC 4 cut(s) 506, 573, 791, 826
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 786
AgsI TTSAA 1 cut(s) 17
AhlI ACTAGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 5 cut(s) 157, 174, 317, 404, 699
AluI AGCT 5 cut(s) 157, 174, 317, 404, 699
Aor13HI TCCGGA 1 cut(s) 109
AoxI GGCC 2 cut(s) 688, 780
ApeKI GCWGC 1 cut(s) 755
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
Asp718I GGTACC 1 cut(s) 571
AsuHPI GGTGA 2 cut(s) 313, 526
BanI GGYRCC 1 cut(s) 571
BbvI GCAGC 1 cut(s) 767
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 3 cut(s) 273, 565, 639
BcuI ACTAGT 1 cut(s) 59
BfaI CTAG 5 cut(s) 60, 221, 521, 696, 822
BglII AGATCT 1 cut(s) 727
BisI GCNGC 1 cut(s) 756
BlpI GCTNAGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 757
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 3 cut(s) 425, 498, 573
BmrFI CCNGG 1 cut(s) 128
BmsI GCATC 1 cut(s) 620
BpmI CTGGAG 1 cut(s) 169
Bpu1102I GCTNAGC 1 cut(s) 146
BsaBI GATNNNNATC 1 cut(s) 444
BsaJI CCNNGG 2 cut(s) 306, 537
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse1I ACTGG 3 cut(s) 370, 678, 749
Bse8I GATNNNNATC 1 cut(s) 444
BseAI TCCGGA 1 cut(s) 109
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 2 cut(s) 306, 537
BseGI GGATG 1 cut(s) 635
BseJI GATNNNNATC 1 cut(s) 444
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 515, 625
BseNI ACTGG 3 cut(s) 370, 678, 749
BseXI GCAGC 1 cut(s) 767
BsgI GTGCAG 1 cut(s) 786
BshFI GGCC 2 cut(s) 690, 782
BshNI GGYRCC 1 cut(s) 571
BsiSI CCGG 1 cut(s) 110
BslFI GGGAC 2 cut(s) 194, 609
BslI CCNNNNNNNGG 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 194, 609
BsnI GGCC 2 cut(s) 690, 782
Bsp13I TCCGGA 1 cut(s) 109
Bsp143I GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
Bsp1720I GCTNAGC 1 cut(s) 146
Bsp19I CCATGG 2 cut(s) 306, 537
BspACI CCGC 1 cut(s) 292
BspANI GGCC 2 cut(s) 690, 782
BspCNI CTCAG 2 cut(s) 514, 624
BspEI TCCGGA 1 cut(s) 109
BspLI GGNNCC 3 cut(s) 425, 498, 573
BspQI GCTCTTC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 571
BsrI ACTGG 3 cut(s) 370, 678, 749
BssECI CCNNGG 2 cut(s) 306, 537
BssMI GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
BssT1I CCWWGG 2 cut(s) 306, 537
Bst2UI CCWGG 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 764
BstDEI CTNAG 4 cut(s) 146, 501, 611, 761
BstDSI CCRYGG 2 cut(s) 306, 537
BstF5I GGATG 1 cut(s) 635
BstKTI GATC 7 cut(s) 31, 276, 448, 457, 568, 642, 730
BstMBI GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
BstMWI GCNNNNNNNGC 2 cut(s) 696, 764
BstNI CCWGG 1 cut(s) 128
BstNSI RCATGY 1 cut(s) 790
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 767
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
BsuRI GGCC 2 cut(s) 690, 782
BtgI CCRYGG 2 cut(s) 306, 537
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 1 cut(s) 635
CseI GACGC 1 cut(s) 229
Csp6I GTAC 4 cut(s) 505, 572, 790, 825
CviAII CATG 4 cut(s) 307, 538, 592, 787
CviQI GTAC 4 cut(s) 505, 572, 790, 825
DdeI CTNAG 4 cut(s) 146, 501, 611, 761
DpnI GATC 7 cut(s) 30, 275, 447, 456, 567, 641, 729
DpnII GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
DraIII CACNNNGTG 1 cut(s) 764
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
Eco130I CCWWGG 2 cut(s) 306, 537
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 306, 537
ErhI CCWWGG 2 cut(s) 306, 537
FaeI CATG 4 cut(s) 310, 541, 595, 790
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 2 cut(s) 194, 609
FatI CATG 4 cut(s) 306, 537, 591, 786
FbaI TGATCA 3 cut(s) 273, 565, 639
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 756
FokI GGATG 1 cut(s) 642
Fsp4HI GCNGC 1 cut(s) 756
FspBI CTAG 5 cut(s) 60, 221, 521, 696, 822
GluI GCNGC 1 cut(s) 756
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 2 cut(s) 690, 782
HapII CCGG 1 cut(s) 110
HgaI GACGC 1 cut(s) 229
Hin1II CATG 4 cut(s) 310, 541, 595, 790
HinfI GANTC 1 cut(s) 182
HpaII CCGG 1 cut(s) 110
HphI GGTGA 2 cut(s) 313, 526
Hpy166II GTNNAC 2 cut(s) 217, 548
Hpy188I TCNGA 3 cut(s) 87, 639, 709
Hpy188III TCNNGA 4 cut(s) 110, 179, 186, 731
Hpy8I GTNNAC 2 cut(s) 217, 548
HpyAV CCTTC 1 cut(s) 613
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 3 cut(s) 35, 767, 797
HpyF10VI GCNNNNNNNGC 2 cut(s) 696, 764
HpyF3I CTNAG 4 cut(s) 146, 501, 611, 761
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 4 cut(s) 310, 541, 595, 790
Kpn2I TCCGGA 1 cut(s) 109
KpnI GGTACC 1 cut(s) 575
Ksp22I TGATCA 3 cut(s) 273, 565, 639
Kzo9I GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
LguI GCTCTTC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 1 cut(s) 767
LweI GCATC 1 cut(s) 620
MaeI CTAG 5 cut(s) 60, 221, 521, 696, 822
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 55, 397
MalI GATC 7 cut(s) 30, 275, 447, 456, 567, 641, 729
MboI GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
MboII GAAGA 2 cut(s) 29, 550
MflI RGATCY 1 cut(s) 727
MluCI AATT 5 cut(s) 11, 119, 357, 471, 581
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 5 cut(s) 35, 343, 510, 620, 680
MroI TCCGGA 1 cut(s) 109
MseI TTAA 3 cut(s) 584, 666, 717
MslI CAYNNNNRTG 4 cut(s) 269, 344, 389, 841
MspI CCGG 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 696, 764
NcoI CCATGG 2 cut(s) 306, 537
NdeII GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
NlaIII CATG 4 cut(s) 310, 541, 595, 790
NlaIV GGNNCC 3 cut(s) 425, 498, 573
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 790
PciI ACATGT 1 cut(s) 786
PciSI GCTCTTC 1 cut(s) 12
PkrI GCNGC 1 cut(s) 757
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PscI ACATGT 1 cut(s) 786
PsiI TTATAA 1 cut(s) 813
Psp1406I AACGTT 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 3 cut(s) 425, 498, 573
PsrI GAACNNNNNNTAC 2 cut(s) 85, 117
PsuI RGATCY 1 cut(s) 727
RsaI GTAC 4 cut(s) 506, 573, 791, 826
RsaNI GTAC 4 cut(s) 505, 572, 790, 825
RseI CAYNNNNRTG 4 cut(s) 269, 344, 389, 841
SapI GCTCTTC 1 cut(s) 12
SaqAI TTAA 3 cut(s) 584, 666, 717
SatI GCNGC 1 cut(s) 756
Sau3AI GATC 7 cut(s) 28, 273, 445, 454, 565, 639, 727
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 128
SfaNI GCATC 1 cut(s) 620
SmiMI CAYNNNNRTG 4 cut(s) 269, 344, 389, 841
SpeI ACTAGT 1 cut(s) 59
Sse9I AATT 5 cut(s) 11, 119, 357, 471, 581
SsiI CCGC 1 cut(s) 292
SspMI CTAG 5 cut(s) 60, 221, 521, 696, 822
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 2 cut(s) 306, 537
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 170
TasI AATT 5 cut(s) 11, 119, 357, 471, 581
TatI WGTACW 3 cut(s) 504, 789, 824
Tru1I TTAA 3 cut(s) 584, 666, 717
Tru9I TTAA 3 cut(s) 584, 666, 717
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 755
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 431, 594
XceI RCATGY 1 cut(s) 790
XcmI CCANNNNNNNNNTGG 1 cut(s) 483
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 5 cut(s) 60, 221, 521, 696, 822
ZrmI AGTACT 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.