Rorug07G0243800

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000191
Physical Location & Seq
Forward (+)
22515122 .. 22516246
1125 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0243800.1

Sequence Viewer

Length: 1125 bp
ATGGGATCTATAGGCAGTAGTAGTAGTTCAAAAACTTGGATACCATATATGAACAGCAGAGACTGTTCTCAAGGCTTTTGTAGTTTGTACTGTCCACAATGGTGCTACATCGTAATACCACCCCCTCCTTCCTTTGAGTTTCCTCAGGACAATTCATCTTCATCTCCAAATTTCTCTCCTCTTGTTATTGCAATCATTGGCATTTTGGTGAGTGCCTTTCTTCTTGTGAGCTACTACACCATAATGTCCAAGTACTGCGGTAACGAGGACCGAAGAAGAACAAGACGCGGAGAAGACTATGGCCAGAATGAGGAGCTGGATGGTACCCAAAATCCTTCTATCCATGAACCGTGGTATGTTGTGACTGTCGGCTTGGATGAAGGTGTGATAAAGTCATTGGGAGTTTATAAGTACAAGAATGGAGATGACTTAGTTGAAGGGACGGATTGCGCTGTCTGTCTGAGTGAGTTTGAAGAAGATGAGAGCCTGAGGCTGTTGCCCAAGTGCAACCATGCTTTTCATCTTCCATGTATTGATACATGGCTCAAGTCTCACTCGAATTGCCCTCTATGTCGTGCTAGCGTGGTTTCGACGAATGCTCCAACACATCAATTGCCTCCTGTTGTGATTGAAACTCCTCCAAGTAGTAGCAATGAAGATGAAAATGTAATCATGGGGGCACAAGTTGCAGAGACGGGTCATCCTCGAAATGTGGAGATATTGCATGGAGATGTCATTCCAAAGACACCAGTACGCGCTTTTAGTGATTTGGGTAATTCAGAAGAGAGGGATACCATAATAGAGATTGAAAGTGATGATGCATTTGATCATCAAACAGTCAGAAGATCAGTCTCCATGGACTATTTATGTCAGAATAATCGCATTTTAGTTGCCGATATTCTCCACATGAATGATGAAGAAGATGAAGAACATGTGCAAGGGTGCTCACAGTTAGAGTCAGATGAGATTGCTGGTCCTTCAAAACAATCAGTAGCTGGAGGAGTTGGAACTCATAGCCGCAGAAAAGAGACTCTGAGACATGTTGCAATGAAGAGATCATTTTCGGGTGGGAGATTGTTTCTAACTAGGCCTGCAAGAGCAAGGCATATAGTAATTCCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

374

Amino Acids

41.57

Weight (kDa)

5.13

Isoelectric Point (pI)

59.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 149 - 192 1.5e-14 Ring finger domain
zf-RING_11 PF17123 149 - 178 1.2e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 150 - 191 1.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 150 - 191 3.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 153 - 192 3.3e-09 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 157 - 195 3.8e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
Acc65I GGTACC 1 cut(s) 323
AccB1I GGYRCC 1 cut(s) 323
AccII CGCG 2 cut(s) 288, 756
AciI CCGC 3 cut(s) 258, 288, 1018
AclWI GGATC 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 169
AfaI GTAC 5 cut(s) 89, 254, 325, 413, 753
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 2 cut(s) 931, 1039
AgsI TTSAA 6 cut(s) 30, 437, 473, 632, 809, 981
AleI CACNNNNGTG 1 cut(s) 100
AluBI AGCT 3 cut(s) 231, 316, 995
AluI AGCT 3 cut(s) 231, 316, 995
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 6 cut(s) 54, 555, 686, 856, 1022, 1030
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 2 cut(s) 63, 995
AoxI GGCC 2 cut(s) 301, 1088
ApoI RAATTY 1 cut(s) 169
Asp718I GGTACC 1 cut(s) 323
AspLEI GCGC 2 cut(s) 452, 758
AspS9I GGNCC 2 cut(s) 268, 974
AsuHPI GGTGA 1 cut(s) 220
AsuNHI GCTAGC 1 cut(s) 578
AvaII GGWCC 2 cut(s) 268, 974
AxyI CCTNAGG 2 cut(s) 144, 488
BaeGI GKGCMC 1 cut(s) 682
BalI TGGCCA 1 cut(s) 303
BanI GGYRCC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 947
BccI CCATC 1 cut(s) 314
BciVI GTATCC 2 cut(s) 33, 784
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 6 cut(s) 54, 555, 686, 856, 1022, 1030
BfaI CTAG 3 cut(s) 579, 1086, 1123
BfmI CTRYAG 1 cut(s) 9
BfuI GTATCC 2 cut(s) 33, 784
BisI GCNGC 1 cut(s) 1018
BlsI GCNGC 1 cut(s) 1019
BmcAI AGTACT 1 cut(s) 254
Bme18I GGWCC 2 cut(s) 268, 974
BmgT120I GGNCC 2 cut(s) 268, 974
BmiI GGNNCC 1 cut(s) 325
BmsI GCATC 1 cut(s) 808
BmtI GCTAGC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 1017
BpuEI CTTGAG 2 cut(s) 54, 530
BsaJI CCNNGG 2 cut(s) 350, 855
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 749
Bse21I CCTNAGG 2 cut(s) 144, 488
Bse3DI GCAATG 2 cut(s) 658, 1053
BseDI CCNNGG 2 cut(s) 350, 855
BseGI GGATG 3 cut(s) 325, 382, 700
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 2 cut(s) 658, 1053
BseMII CTCAG 4 cut(s) 158, 452, 479, 1025
BseNI ACTGG 1 cut(s) 749
BseRI GAGGAG 4 cut(s) 168, 326, 627, 1014
BseSI GKGCMC 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 288, 756
BshFI GGCC 2 cut(s) 303, 1090
BshNI GGYRCC 1 cut(s) 323
BsiHKAI GWGCWC 1 cut(s) 947
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 6 cut(s) 54, 555, 686, 856, 1022, 1030
BsmBI CGTCTC 1 cut(s) 686
BsmFI GGGAC 1 cut(s) 454
BsmI GAATGC 1 cut(s) 601
BsnI GGCC 2 cut(s) 303, 1090
Bsp1286I GDGCHC 2 cut(s) 682, 947
Bsp143I GATC 4 cut(s) 5, 826, 845, 1055
Bsp19I CCATGG 1 cut(s) 855
BspACI CCGC 3 cut(s) 258, 288, 1018
BspANI GGCC 2 cut(s) 303, 1090
BspCNI CTCAG 4 cut(s) 157, 453, 480, 1026
BspFNI CGCG 2 cut(s) 288, 756
BspLI GGNNCC 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 582
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 323
BsrDI GCAATG 2 cut(s) 658, 1053
BsrI ACTGG 1 cut(s) 749
BssECI CCNNGG 2 cut(s) 350, 855
BssMI GATC 4 cut(s) 5, 826, 845, 1055
BssT1I CCWWGG 1 cut(s) 855
Bst4CI ACNGT 6 cut(s) 65, 92, 351, 367, 838, 951
Bst6I CTCTTC 2 cut(s) 777, 1046
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 2 cut(s) 580, 1092
BstDEI CTNAG 5 cut(s) 144, 430, 461, 488, 1034
BstDSI CCRYGG 2 cut(s) 350, 855
BstF5I GGATG 3 cut(s) 325, 382, 700
BstFNI CGCG 2 cut(s) 288, 756
BstHHI GCGC 2 cut(s) 452, 758
BstKTI GATC 4 cut(s) 8, 829, 848, 1058
BstMAI GTCTC 6 cut(s) 54, 555, 686, 856, 1022, 1030
BstMBI GATC 4 cut(s) 5, 826, 845, 1055
BstMWI GCNNNNNNNGC 1 cut(s) 686
BstNSI RCATGY 2 cut(s) 935, 1043
BstSFI CTRYAG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 682
BstUI CGCG 2 cut(s) 288, 756
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
Bsu36I CCTNAGG 2 cut(s) 144, 488
BsuI GTATCC 2 cut(s) 33, 784
BsuRI GGCC 2 cut(s) 303, 1090
BtgI CCRYGG 2 cut(s) 350, 855
BtsCI GGATG 3 cut(s) 325, 382, 700
Cac8I GCNNGC 2 cut(s) 580, 1092
CaiI CAGNNNCTG 2 cut(s) 63, 995
CfoI GCGC 2 cut(s) 452, 758
Cfr13I GGNCC 2 cut(s) 268, 974
CseI GACGC 1 cut(s) 294
Csp6I GTAC 5 cut(s) 88, 253, 324, 412, 752
CviQI GTAC 5 cut(s) 88, 253, 324, 412, 752
DdeI CTNAG 5 cut(s) 144, 430, 461, 488, 1034
DpnI GATC 4 cut(s) 7, 828, 847, 1057
DpnII GATC 4 cut(s) 5, 826, 845, 1055
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 2 cut(s) 777, 1046
EarI CTCTTC 2 cut(s) 777, 1046
Eco130I CCWWGG 1 cut(s) 855
Eco147I AGGCCT 1 cut(s) 1090
Eco47I GGWCC 2 cut(s) 268, 974
Eco81I CCTNAGG 2 cut(s) 144, 488
EcoT14I CCWWGG 1 cut(s) 855
EcoT22I ATGCAT 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 855
Esp3I CGTCTC 1 cut(s) 686
FaqI GGGAC 1 cut(s) 454
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 1 cut(s) 1018
FokI GGATG 3 cut(s) 332, 389, 687
Fsp4HI GCNGC 1 cut(s) 1018
FspBI CTAG 3 cut(s) 579, 1086, 1123
GlaI GCGC 2 cut(s) 451, 757
GluI GCNGC 1 cut(s) 1018
GsuI CTGGAG 1 cut(s) 1017
HaeIII GGCC 2 cut(s) 303, 1090
HgaI GACGC 1 cut(s) 294
HhaI GCGC 2 cut(s) 452, 758
Hin6I GCGC 2 cut(s) 450, 756
HinP1I GCGC 2 cut(s) 450, 756
HinfI GANTC 2 cut(s) 956, 1030
HphI GGTGA 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 6 cut(s) 462, 781, 842, 873, 961, 1035
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 5 cut(s) 138, 345, 374, 431, 987
HpyCH4III ACNGT 6 cut(s) 65, 92, 351, 367, 838, 951
HpyCH4V TGCA 8 cut(s) 191, 507, 689, 724, 821, 937, 1046, 1094
HpyF10VI GCNNNNNNNGC 1 cut(s) 686
HpyF3I CTNAG 5 cut(s) 144, 430, 461, 488, 1034
HspAI GCGC 2 cut(s) 450, 756
KpnI GGTACC 1 cut(s) 327
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 5, 826, 845, 1055
LmnI GCTCC 2 cut(s) 313, 604
LpnPI CCDG 9 cut(s) 131, 302, 317, 500, 633, 762, 957, 981, 1104
LweI GCATC 1 cut(s) 808
MaeI CTAG 3 cut(s) 579, 1086, 1123
MaeIII GTNAC 2 cut(s) 260, 361
MalI GATC 4 cut(s) 7, 828, 847, 1057
MboI GATC 4 cut(s) 5, 826, 845, 1055
MfeI CAATTG 1 cut(s) 611
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 2 cut(s) 682, 947
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 6 cut(s) 151, 169, 559, 611, 775, 1113
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 2 cut(s) 965, 1024
MmeI TCCRAC 2 cut(s) 626, 985
Mox20I TGGCCA 1 cut(s) 303
Mph1103I ATGCAT 1 cut(s) 823
MscI TGGCCA 1 cut(s) 303
MslI CAYNNNNRTG 5 cut(s) 100, 206, 242, 729, 909
Msp20I TGGCCA 1 cut(s) 303
MunI CAATTG 1 cut(s) 611
Mva1269I GAATGC 1 cut(s) 601
MvnI CGCG 2 cut(s) 288, 756
MwoI GCNNNNNNNGC 1 cut(s) 686
NcoI CCATGG 1 cut(s) 855
NdeII GATC 4 cut(s) 5, 826, 845, 1055
NheI GCTAGC 1 cut(s) 578
NlaIV GGNNCC 1 cut(s) 325
NmuCI GTSAC 1 cut(s) 361
NsiI ATGCAT 1 cut(s) 823
NspI RCATGY 2 cut(s) 935, 1043
OliI CACNNNNGTG 1 cut(s) 100
PceI AGGCCT 1 cut(s) 1090
PciI ACATGT 2 cut(s) 931, 1039
PctI GAATGC 1 cut(s) 601
PkrI GCNGC 1 cut(s) 1019
PleI GAGTC 2 cut(s) 964, 1024
PpsI GAGTC 2 cut(s) 964, 1024
PscI ACATGT 2 cut(s) 931, 1039
PsiI TTATAA 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 325
PspPI GGNCC 2 cut(s) 268, 974
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PstNI CAGNNNCTG 2 cut(s) 63, 995
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 5 cut(s) 89, 254, 325, 413, 753
RsaNI GTAC 5 cut(s) 88, 253, 324, 412, 752
RseI CAYNNNNRTG 5 cut(s) 100, 206, 242, 729, 909
SatI GCNGC 1 cut(s) 1018
Sau3AI GATC 4 cut(s) 5, 826, 845, 1055
Sau96I GGNCC 2 cut(s) 268, 974
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 2 cut(s) 965, 1024
SduI GDGCHC 2 cut(s) 682, 947
SetI ASST 4 cut(s) 233, 318, 385, 997
SfaNI GCATC 1 cut(s) 808
SfcI CTRYAG 1 cut(s) 9
SinI GGWCC 2 cut(s) 268, 974
SmiMI CAYNNNNRTG 5 cut(s) 100, 206, 242, 729, 909
SmlI CTYRAG 2 cut(s) 69, 545
SmoI CTYRAG 2 cut(s) 69, 545
Sse9I AATT 6 cut(s) 151, 169, 559, 611, 775, 1113
SseBI AGGCCT 1 cut(s) 1090
SsiI CCGC 3 cut(s) 258, 288, 1018
SspMI CTAG 3 cut(s) 579, 1086, 1123
StuI AGGCCT 1 cut(s) 1090
StyI CCWWGG 1 cut(s) 855
TaaI ACNGT 6 cut(s) 65, 92, 351, 367, 838, 951
TaqI TCGA 3 cut(s) 557, 590, 706
TaqII GACCGA 1 cut(s) 285
TasI AATT 6 cut(s) 151, 169, 559, 611, 775, 1113
TatI WGTACW 3 cut(s) 87, 252, 411
TauI GCSGC 1 cut(s) 1020
TseFI GTSAC 1 cut(s) 361
Tsp45I GTSAC 1 cut(s) 361
TspGWI ACGGA 1 cut(s) 458
VpaK11BI GGWCC 2 cut(s) 268, 974
XapI RAATTY 1 cut(s) 169
XceI RCATGY 2 cut(s) 935, 1043
XspI CTAG 3 cut(s) 579, 1086, 1123
ZrmI AGTACT 1 cut(s) 254
Zsp2I ATGCAT 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.