Rmu_sc0000347.1_g000047

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000347.1
OG0000191
Physical Location & Seq
Forward (+)
159673 .. 160221
549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000347.1_g000047.1.cds

Sequence Viewer

Length: 549 bp
atggcaagagctttcaccagagaaccctctggcattacaatgctacaaagaattggaactgggatgtttttctctatcatatctatggtcgttgcagctttagttgagatgaaaaggctccaaactgccagagattatgatctggttgatctgccaagtgccacaattccaatgagtatttggtggttggttcctcagtactttctgtatggactagccgatgtttttatcatggttggtctacaagagttcttctatgatcaggtaccaaatgaaataagaagcatgggactttccttctacctccgtatatttggtgtgggatgctttctgatcagcaactttcttatttctattattgaggaagcaaccagttggggaggccacactagctggttttccgattaccttaatcttgcagatcttgattacttttactggttattagcagcacgtagtgcagtaggattgttggcctacatgtactttgcaaaatcttacatttataacagggctagtacaatatcaataatatcaacacaaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

182

Amino Acids

20.83

Weight (kDa)

5.01

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AccI GTMKAC 1 cut(s) 241
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 4 cut(s) 200, 267, 485, 520
AflIII ACRYGT 1 cut(s) 480
AluBI AGCT 3 cut(s) 11, 98, 393
AluI AGCT 3 cut(s) 11, 98, 393
AoxI GGCC 2 cut(s) 382, 474
ApeKI GCWGC 2 cut(s) 95, 449
Asp718I GGTACC 1 cut(s) 265
AsuHPI GGTGA 1 cut(s) 7
BanI GGYRCC 1 cut(s) 265
BbvI GCAGC 2 cut(s) 107, 461
BclI TGATCA 2 cut(s) 259, 333
BfaI CTAG 3 cut(s) 215, 390, 516
BglII AGATCT 1 cut(s) 421
BisI GCNGC 2 cut(s) 96, 450
BlsI GCNGC 2 cut(s) 97, 451
BmcAI AGTACT 1 cut(s) 200
BmiI GGNNCC 3 cut(s) 119, 192, 267
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 455
BsaBI GATNNNNATC 1 cut(s) 138
Bse1I ACTGG 3 cut(s) 64, 372, 443
Bse8I GATNNNNATC 1 cut(s) 138
BseGI GGATG 2 cut(s) 69, 329
BseJI GATNNNNATC 1 cut(s) 138
BseMII CTCAG 1 cut(s) 209
BseNI ACTGG 3 cut(s) 64, 372, 443
BseXI GCAGC 2 cut(s) 107, 461
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 2 cut(s) 384, 476
BshNI GGYRCC 1 cut(s) 265
BslFI GGGAC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 2 cut(s) 384, 476
Bsp143I GATC 5 cut(s) 139, 148, 259, 333, 421
BspANI GGCC 2 cut(s) 384, 476
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 3 cut(s) 119, 192, 267
BspT107I GGYRCC 1 cut(s) 265
BsrI ACTGG 3 cut(s) 64, 372, 443
BssMI GATC 5 cut(s) 139, 148, 259, 333, 421
BstAPI GCANNNNNTGC 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 455
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 2 cut(s) 69, 329
BstKTI GATC 5 cut(s) 142, 151, 262, 336, 424
BstMBI GATC 5 cut(s) 139, 148, 259, 333, 421
BstMWI GCNNNNNNNGC 2 cut(s) 390, 458
BstNSI RCATGY 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 107, 461
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 2 cut(s) 384, 476
BtsCI GGATG 2 cut(s) 69, 329
Csp6I GTAC 4 cut(s) 199, 266, 484, 519
CviAII CATG 3 cut(s) 232, 286, 481
CviJI RGCY 8 cut(s) 11, 98, 118, 218, 384, 393, 476, 515
CviKI_1 RGCY 8 cut(s) 11, 98, 118, 218, 384, 393, 476, 515
CviQI GTAC 4 cut(s) 199, 266, 484, 519
DdeI CTNAG 1 cut(s) 195
DpnI GATC 5 cut(s) 141, 150, 261, 335, 423
DpnII GATC 5 cut(s) 139, 148, 259, 333, 421
DraIII CACNNNGTG 1 cut(s) 458
FaeI CATG 3 cut(s) 235, 289, 484
FaqI GGGAC 1 cut(s) 303
FatI CATG 3 cut(s) 231, 285, 480
FbaI TGATCA 2 cut(s) 259, 333
FblI GTMKAC 1 cut(s) 241
Fnu4HI GCNGC 2 cut(s) 96, 450
FokI GGATG 2 cut(s) 76, 336
Fsp4HI GCNGC 2 cut(s) 96, 450
FspBI CTAG 3 cut(s) 215, 390, 516
GluI GCNGC 2 cut(s) 96, 450
HaeIII GGCC 2 cut(s) 384, 476
Hin1II CATG 3 cut(s) 235, 289, 484
HphI GGTGA 1 cut(s) 7
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 333, 403
Hpy188III TCNNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 242
HpyAV CCTTC 1 cut(s) 307
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 4 cut(s) 95, 419, 461, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 390, 458
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 454
Hsp92II CATG 3 cut(s) 235, 289, 484
KpnI GGTACC 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 259, 333
Kzo9I GATC 5 cut(s) 139, 148, 259, 333, 421
LmnI GCTCC 1 cut(s) 123
Lsp1109I GCAGC 2 cut(s) 107, 461
LweI GCATC 1 cut(s) 314
MaeI CTAG 3 cut(s) 215, 390, 516
MaeII ACGT 1 cut(s) 454
MalI GATC 5 cut(s) 141, 150, 261, 335, 423
MboI GATC 5 cut(s) 139, 148, 259, 333, 421
MboII GAAGA 1 cut(s) 244
MflI RGATCY 1 cut(s) 421
MluCI AATT 2 cut(s) 51, 165
MnlI CCTC 5 cut(s) 37, 204, 314, 355, 374
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 2 cut(s) 38, 83
MwoI GCNNNNNNNGC 2 cut(s) 390, 458
NdeII GATC 5 cut(s) 139, 148, 259, 333, 421
NlaIII CATG 3 cut(s) 235, 289, 484
NlaIV GGNNCC 3 cut(s) 119, 192, 267
NspI RCATGY 1 cut(s) 484
PciI ACATGT 1 cut(s) 480
PkrI GCNGC 2 cut(s) 97, 451
Ppu21I YACGTR 1 cut(s) 455
PscI ACATGT 1 cut(s) 480
PsiI TTATAA 1 cut(s) 507
PspN4I GGNNCC 3 cut(s) 119, 192, 267
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 4 cut(s) 200, 267, 485, 520
RsaNI GTAC 4 cut(s) 199, 266, 484, 519
RseI CAYNNNNRTG 2 cut(s) 38, 83
SaqAI TTAA 1 cut(s) 411
SatI GCNGC 2 cut(s) 96, 450
Sau3AI GATC 5 cut(s) 139, 148, 259, 333, 421
ScaI AGTACT 1 cut(s) 200
SetI ASST 7 cut(s) 13, 100, 267, 306, 395, 411, 457
SfaNI GCATC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 38, 83
Sse9I AATT 2 cut(s) 51, 165
SspMI CTAG 3 cut(s) 215, 390, 516
TaiI ACGT 1 cut(s) 457
TasI AATT 2 cut(s) 51, 165
TatI WGTACW 3 cut(s) 198, 483, 518
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TseI GCWGC 2 cut(s) 95, 449
TspDTI ATGAA 2 cut(s) 125, 288
TspGWI ACGGA 1 cut(s) 296
XceI RCATGY 1 cut(s) 484
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 241
XspI CTAG 3 cut(s) 215, 390, 516
ZrmI AGTACT 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.