Rmu_sc0000347.1_g000050

Protein NRT1 PTR FAMILY 5.10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000347.1
OG0000191
Physical Location & Seq
Forward (+)
202884 .. 205126
2243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000347.1_g000050.1.cds

Sequence Viewer

Length: 858 bp
atgactacatttctcgaagaatctccggagacccgcactccactcatagacgacggcgtagacggcgccgttgactacaaaggccatcaagtccgcagatccacctccggcggttggctttcagcatcgttcataataggggtggaaattgcggagaggttcgcctactatgggattagctcgaatctgataacgtttctgacggggccgttgggacagtcgacggcgacggcggccgagaatgtgaacatatggtccggaacttctcagttgcttcctctattgggagcattcgtggcggattcctttctgggtcgctaccgcaccattattgttgcttctctcctctacattttgggactcgggttgttgaccgtgtcggccttgcttacttcttctgagcttcaaatattgttattcttcttctctctatatctagtagcagttgcgcaaggtggacacaagccctgtgttcaggctttcggggcagatcagtttgatggacaagatccagaggagtgcaaagcgaaaagctcattcttcaattggtggtactttggtagcaatgcaggcatactattgacagtatcagtattggcctacatacaggacaatctaagctggggtctgggttttggaattccttgtgttgtgatggtccttgcactgattatttttgtcagtggaactcggacataccggtatagcatcaaaggggaggaggaaagcccatttgtgagaatcagcaaggtttttgttgctgcattaaggaaccagcgaactagtccttcagcaatagcttctgaagaggaatcttgtggaaccttgcctgatcaaagttctgaacaattcaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

285

Amino Acids

30.97

Weight (kDa)

4.83

Isoelectric Point (pI)

43.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G22540
fragaria_vesca FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 450
AccB1I GGYRCC 1 cut(s) 65
AccI GTMKAC 2 cut(s) 60, 221
AccIII TCCGGA 2 cut(s) 25, 257
AciI CCGC 7 cut(s) 34, 94, 111, 152, 233, 299, 322
AclI AACGTT 1 cut(s) 194
AclWI GGATC 2 cut(s) 93, 503
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 2 cut(s) 774, 825
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 3 cut(s) 114, 171, 284
AgeI ACCGGT 1 cut(s) 699
AgsI TTSAA 3 cut(s) 407, 544, 853
AhlI ACTAGT 1 cut(s) 782
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 5 cut(s) 180, 403, 534, 621, 800
AluI AGCT 5 cut(s) 180, 403, 534, 621, 800
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 93, 503
Ama87I CYCGRG 1 cut(s) 362
Aor13HI TCCGGA 2 cut(s) 25, 257
AoxI GGCC 5 cut(s) 82, 206, 234, 381, 597
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 1 cut(s) 639
AsiGI ACCGGT 1 cut(s) 699
AspLEI GCGC 2 cut(s) 68, 451
AspS9I GGNCC 3 cut(s) 206, 255, 658
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 255, 658
BaeI ACNNNNGTAYC 2 cut(s) 544, 577
BanI GGYRCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 748
BccI CCATC 3 cut(s) 93, 494, 649
BceAI ACGGC 6 cut(s) 53, 70, 79, 193, 240, 246
BclI TGATCA 1 cut(s) 832
BcoDI GTCTC 1 cut(s) 23
BcuI ACTAGT 1 cut(s) 782
BfaI CTAG 2 cut(s) 437, 783
BfoI RGCGCY 1 cut(s) 69
BisI GCNGC 2 cut(s) 234, 762
BlsI GCNGC 2 cut(s) 235, 763
Bme18I GGWCC 2 cut(s) 255, 658
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 3 cut(s) 206, 255, 658
BmiI GGNNCC 4 cut(s) 67, 207, 773, 823
BmsI GCATC 2 cut(s) 134, 717
BsaHI GRCGYC 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 23
BsaWI WCCGGW 3 cut(s) 25, 257, 699
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 279, 309
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 171, 284
Bse118I RCCGGY 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 571
BseAI TCCGGA 2 cut(s) 25, 257
BseLI CCNNNNNNNGG 3 cut(s) 114, 171, 284
BseMI GCAATG 1 cut(s) 571
BseMII CTCAG 2 cut(s) 281, 390
BseRI GAGGAG 3 cut(s) 335, 530, 734
BseX3I CGGCCG 1 cut(s) 234
BseXI GCAGC 1 cut(s) 748
BseYI CCCAGC 1 cut(s) 621
Bsh1285I CGRYCG 1 cut(s) 237
BshFI GGCC 5 cut(s) 84, 208, 236, 383, 599
BshNI GGYRCC 1 cut(s) 65
BshTI ACCGGT 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 4 cut(s) 26, 108, 258, 700
BslFI GGGAC 2 cut(s) 228, 372
BslI CCNNNNNNNGG 3 cut(s) 114, 171, 284
BsmAI GTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 228, 372
BsmI GAATGC 1 cut(s) 290
BsnI GGCC 5 cut(s) 84, 208, 236, 383, 599
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 362
Bsp13I TCCGGA 2 cut(s) 25, 257
Bsp143I GATC 4 cut(s) 98, 490, 508, 832
BspACI CCGC 7 cut(s) 34, 94, 111, 152, 233, 299, 322
BspANI GGCC 5 cut(s) 84, 208, 236, 383, 599
BspCNI CTCAG 2 cut(s) 280, 391
BspEI TCCGGA 2 cut(s) 25, 257
BspLI GGNNCC 4 cut(s) 67, 207, 773, 823
BspPI GGATC 2 cut(s) 93, 503
BspT107I GGYRCC 1 cut(s) 65
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 571
BsrFI RCCGGY 1 cut(s) 699
BssAI RCCGGY 1 cut(s) 699
BssMI GATC 4 cut(s) 98, 490, 508, 832
BssNI GRCGYC 1 cut(s) 66
Bst4CI ACNGT 3 cut(s) 219, 376, 586
Bst6I CTCTTC 1 cut(s) 801
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 3 cut(s) 267, 399, 617
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 451
BstKTI GATC 4 cut(s) 101, 493, 511, 835
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 98, 490, 508, 832
BstMCI CGRYCG 1 cut(s) 237
BstMWI GCNNNNNNNGC 5 cut(s) 63, 233, 296, 485, 570
BstV1I GCAGC 1 cut(s) 748
BstX2I RGATCY 2 cut(s) 98, 508
BstYI RGATCY 2 cut(s) 98, 508
BstZI CGGCCG 1 cut(s) 234
BsuRI GGCC 5 cut(s) 84, 208, 236, 383, 599
BtsIMutI CAGTG 2 cut(s) 665, 688
Cac8I GCNNGC 1 cut(s) 571
CfoI GCGC 2 cut(s) 68, 451
Cfr10I RCCGGY 1 cut(s) 699
Cfr13I GGNCC 3 cut(s) 206, 255, 658
Csp6I GTAC 1 cut(s) 553
CspAI ACCGGT 1 cut(s) 699
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 3 cut(s) 267, 399, 617
DinI GGCGCC 1 cut(s) 67
DpnI GATC 4 cut(s) 100, 492, 510, 834
DpnII GATC 4 cut(s) 98, 490, 508, 832
EaeI YGGCCR 1 cut(s) 234
EagI CGGCCG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 801
EciI GGCGGA 1 cut(s) 314
EclXI CGGCCG 1 cut(s) 234
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 255, 658
Eco52I CGGCCG 1 cut(s) 234
Eco57I CTGAAG 2 cut(s) 774, 825
Eco88I CYCGRG 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 639
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaqI GGGAC 2 cut(s) 228, 372
FauI CCCGC 1 cut(s) 41
FauNDI CATATG 1 cut(s) 251
FbaI TGATCA 1 cut(s) 832
FblI GTMKAC 2 cut(s) 60, 221
Fnu4HI GCNGC 2 cut(s) 234, 762
Fsp4HI GCNGC 2 cut(s) 234, 762
FspBI CTAG 2 cut(s) 437, 783
FspI TGCGCA 1 cut(s) 450
GlaI GCGC 2 cut(s) 67, 450
GluI GCNGC 2 cut(s) 234, 762
GsaI CCCAGC 1 cut(s) 625
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 5 cut(s) 84, 208, 236, 383, 599
HapII CCGG 4 cut(s) 26, 108, 258, 700
HhaI GCGC 2 cut(s) 68, 451
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 2 cut(s) 66, 449
HinP1I GCGC 2 cut(s) 66, 449
HincII GTYRAC 3 cut(s) 73, 222, 372
HindII GTYRAC 3 cut(s) 73, 222, 372
HinfI GANTC 6 cut(s) 20, 184, 302, 360, 741, 812
HpaII CCGG 4 cut(s) 26, 108, 258, 700
Hpy166II GTNNAC 6 cut(s) 61, 73, 222, 247, 372, 458
Hpy188I TCNGA 6 cut(s) 189, 201, 400, 693, 805, 844
Hpy188III TCNNGA 4 cut(s) 14, 26, 258, 512
Hpy8I GTNNAC 6 cut(s) 61, 73, 222, 247, 372, 458
Hpy99I CGWCG 3 cut(s) 56, 226, 232
HpyAV CCTTC 1 cut(s) 798
HpyCH4III ACNGT 3 cut(s) 219, 376, 586
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 4 cut(s) 522, 569, 665, 764
HpyF10VI GCNNNNNNNGC 5 cut(s) 63, 233, 296, 485, 570
HpyF3I CTNAG 3 cut(s) 267, 399, 617
HpySE526I ACGT 1 cut(s) 194
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 2 cut(s) 66, 449
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 2 cut(s) 25, 257
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 4 cut(s) 98, 490, 508, 832
LmnI GCTCC 1 cut(s) 287
Lsp1109I GCAGC 1 cut(s) 748
LweI GCATC 2 cut(s) 134, 717
MaeI CTAG 2 cut(s) 437, 783
MaeII ACGT 1 cut(s) 194
MalI GATC 4 cut(s) 100, 492, 510, 834
MboI GATC 4 cut(s) 98, 490, 508, 832
MboII GAAGA 6 cut(s) 29, 387, 412, 415, 532, 818
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 2 cut(s) 98, 508
MluCI AATT 4 cut(s) 147, 544, 639, 848
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 354
MnlI CCTC 8 cut(s) 115, 150, 288, 356, 508, 712, 715, 802
MroI TCCGGA 2 cut(s) 25, 257
MseI TTAA 1 cut(s) 767
MspI CCGG 4 cut(s) 26, 108, 258, 700
MunI CAATTG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 290
MwoI GCNNNNNNNGC 5 cut(s) 63, 233, 296, 485, 570
NarI GGCGCC 1 cut(s) 66
NdeI CATATG 1 cut(s) 251
NdeII GATC 4 cut(s) 98, 490, 508, 832
NlaIV GGNNCC 4 cut(s) 67, 207, 773, 823
NmeAIII GCCGAG 1 cut(s) 262
NsbI TGCGCA 1 cut(s) 450
PctI GAATGC 1 cut(s) 290
PfeI GAWTC 5 cut(s) 20, 184, 302, 741, 812
PflFI GACNNNGTC 1 cut(s) 376
PinAI ACCGGT 1 cut(s) 699
PkrI GCNGC 2 cut(s) 235, 763
PleI GAGTC 1 cut(s) 354
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 354
Psp1406I AACGTT 1 cut(s) 194
PspFI CCCAGC 1 cut(s) 621
PspN4I GGNNCC 4 cut(s) 67, 207, 773, 823
PspPI GGNCC 3 cut(s) 206, 255, 658
PsuI RGATCY 2 cut(s) 98, 508
PsyI GACNNNGTC 1 cut(s) 376
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SalI GTCGAC 1 cut(s) 220
SaqAI TTAA 1 cut(s) 767
SatI GCNGC 2 cut(s) 234, 762
Sau3AI GATC 4 cut(s) 98, 490, 508, 832
Sau96I GGNCC 3 cut(s) 206, 255, 658
SchI GAGTC 1 cut(s) 354
SfaNI GCATC 2 cut(s) 134, 717
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 2 cut(s) 255, 658
SpeI ACTAGT 1 cut(s) 782
Sse9I AATT 4 cut(s) 147, 544, 639, 848
SsiI CCGC 7 cut(s) 34, 94, 111, 152, 233, 299, 322
SspDI GGCGCC 1 cut(s) 65
SspI AATATT 1 cut(s) 411
SspMI CTAG 2 cut(s) 437, 783
TaaI ACNGT 3 cut(s) 219, 376, 586
TaiI ACGT 1 cut(s) 197
TaqI TCGA 3 cut(s) 15, 182, 221
TasI AATT 4 cut(s) 147, 544, 639, 848
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 5 cut(s) 20, 184, 302, 741, 812
Tru1I TTAA 1 cut(s) 767
Tru9I TTAA 1 cut(s) 767
TscAI CASTG 2 cut(s) 672, 688
TseI GCWGC 1 cut(s) 761
TspDTI ATGAA 1 cut(s) 121
TspRI CASTG 2 cut(s) 672, 688
Tth111I GACNNNGTC 1 cut(s) 376
VpaK11BI GGWCC 2 cut(s) 255, 658
XapI RAATTY 1 cut(s) 639
XmiI GTMKAC 2 cut(s) 60, 221
XspI CTAG 2 cut(s) 437, 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.