Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0000191

Physical Location & Seq

Genomic Coordinates Forward (+)

27908486 .. 27910365

Gene Structure 1880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG275400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGAAGAACTCGATGTCGGATCACAGTTTTTACATTGACACTGAAGAAGAAGAAGCCAAGCACCGCTGGCAGCAGCAGATTAGCCCAGTTCTTACAACACCCAATGGCCTCGAAGTTACAGGGAATGAATGCTGTGAAAGATTGGCATACTATGGGATGAGCTCAAATCTGGTCATTTATTTCAAGCAACATCTGCACCAAACCAGTGCTAAAGCAGCTGAAAGCTACTCAAATTGGAGTGGAACATGTTATTTCACTCCCTTGCTCAGAGCATTTTTGGCTGATGCCTATTTGGGAAGACATATGACTATTGCCTCTTTCTCAATCATCTCTGTCATTAGGCGTTTAGGCATCTTCACTGCCATTGCTAACTTCTTTGATTTCCAAGACCATGGATGGAACTGCAAAGCTCAGATTTACAAAAGCCCCAACATTGCAAGTCTGCCCATTGCTGCTTATTGTCAGAGATGCATCTCGCGCCATTTAACTGACTTTCTTTGGGCTCGGATCTACGAAAGCTTCTCAACAGGTTCTGCTCTGTTTGATTTTCATTGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006807 GO:0006810 GO:0006857 GO:0008150 GO:0008152 GO:0009506 GO:0015833 GO:0016020 GO:0022857 GO:0030054 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0042937 GO:0042938 GO:0042939 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

186

Amino Acids

21.43

Weight (kDa)

7.07

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000191)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22540
fragaria_vesca	FvH4_5g31770 FvH4_5g31770 FvH4_5g31790 FvH4_5g31790 FvH4_5g31800 FvH4_5g31800 FvH4_5g31800 FvH4_5g31830 FvH4_5g31840 FvH4_5g31840 FvH4_6g12331
malus_domestica	MD02G1288000.v1.1 MD02G1288200.v1.1 MD03G1076700.v1.1 MD07G1122800.v1.1 MD08G1218300.v1.1 MD15G1406500.v1.1 MD15G1406600.v1.1 MD15G1406700.v1.1
prunus_persica	Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1 Prupe.7G017300_v2.0.a1
pyrus_communis	pycom05g17900 pycom08g18920 pycom15g36290 pycom15g36300 pycom15g36310
rosa_chinensis	RchiOBHm_Chr3g0482421 RchiOBHm_Chr4g0413471 RchiOBHm_Chr7g0227651 RchiOBHm_Chr7g0227661 RchiOBHm_Chr7g0227671 RchiOBHm_Chr7g0227681 RchiOBHm_Chr7g0227701 RchiOBHm_Chr7g0227711 RchiOBHm_Chr7g0227721 RchiOBHm_Chr7g0227731 RchiOBHm_Chr7g0227741 RchiOBHm_Chr7g0227761 RchiOBHm_Chr7g0227781 RchiOBHm_Chr7g0227791 RchiOBHm_Chr7g0227801 RchiOBHm_Chr7g0227861 RchiOBHm_Chr7g0227881
rosa_laevigata	RLG00000001610 RLG00000001611 RLG00000001613 RLG00000001617 RLG00000001618 RLG00000001619 RLG00000001622 RLG00000001623 RLG00000001625 RLG00000001627 RLG00000001628 RLG00000001629 RLG00000001630 RLG00000008217
rosa_multiflora	Rmu_co8446845.1_g000001 Rmu_co8488273.1_g000001 Rmu_sc0000347.1_g000023 Rmu_sc0000347.1_g000032 Rmu_sc0000347.1_g000038 Rmu_sc0000347.1_g000046 Rmu_sc0000347.1_g000047 Rmu_sc0000347.1_g000049 Rmu_sc0000347.1_g000050 Rmu_sc0000883.1_g000014 Rmu_sc0000883.1_g000015 Rmu_sc0001930.1_g000001 Rmu_sc0001930.1_g000006 Rmu_sc0005026.1_g000009 Rmu_sc0005026.1_g000013 Rmu_sc0005026.1_g000018 Rmu_sc0005026.1_g000021 Rmu_sc0005743.1_g000008 Rmu_sc0005743.1_g000010 Rmu_sc0010635.1_g000001 Rmu_sc0013384.1_g000001 Rmu_sc0013521.1_g000001 Rmu_sc0014985.1_g000003 Rmu_sc0022490.1_g000001 Rmu_sc0025092.1_g000001 Rmu_sc0036408.1_g000001
rosa_roxburghii	Rroxscaffold_3G00231820 Rroxscaffold_3G00231860 Rroxscaffold_3G00231890 Rroxscaffold_3G00231910 Rroxscaffold_3G00231930 Rroxscaffold_3G00231940 Rroxscaffold_3G00231960 Rroxscaffold_3G00231970 Rroxscaffold_3G00231980 Rroxscaffold_5G00357370
rosa_rugosa	Rorug03G0196300 Rorug04G0120600 Rorug07G0242700 Rorug07G0242800 Rorug07G0242900 Rorug07G0243000 Rorug07G0243100 Rorug07G0243200 Rorug07G0243400 Rorug07G0243600 Rorug07G0243800 Rorug07G0243900
rosa_samantha	Rh3AG109500 Rh3AG248000 Rh3BG283000 Rh3CG114700 Rh3CG279600 Rh3DG275400 Rh3DG275500 Rh3DG275800 Rh4AG180200 Rh4BG179400 Rh4DG175400 Rh6AG297600 Rh6CG311000 Rh7AG396200 Rh7AG396300 Rh7AG396400 Rh7AG396600 Rh7AG397000 Rh7AG397100 Rh7BG377800 Rh7BG377900 Rh7BG378000 Rh7BG378100 Rh7BG378300 Rh7BG378400 Rh7BG378500 Rh7BG378800 Rh7BG378900 Rh7DG391900 Rh7DG392000 Rh7DG392300 Rh7DG392400 Rh7DG392700
rosa_wichuraiana	Rw3G022320 Rw4G015000 Rw4G015060 Rw7G032940 Rw7G032950 Rw7G032960 Rw7G032970 Rw7G032980 Rw7G032990 Rw7G033000 Rw7G033010 Rw7G033020 Rw7G033030 Rw7G033050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	478
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	2 cut(s)	27, 515
AcuI	CTGAAG	1 cut(s)	63
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	184
AluBI	AGCT	5 cut(s)	162, 218, 225, 410, 519
AluI	AGCT	5 cut(s)	162, 218, 225, 410, 519
Alw21I	GWGCWC	1 cut(s)	164
AlwI	GGATC	2 cut(s)	27, 515
AlwNI	CAGNNNCTG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	70, 73, 215, 452
AspLEI	GCGC	1 cut(s)	480
BanII	GRGCYC	2 cut(s)	164, 505
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	82, 85, 227, 439
BccI	CCATC	1 cut(s)	390
BisI	GCNGC	4 cut(s)	71, 74, 216, 453
BlsI	GCNGC	4 cut(s)	72, 75, 217, 454
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	4 cut(s)	274, 360, 458, 480
BmuI	ACTGGG	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	391
Bse1I	ACTGG	2 cut(s)	86, 204
Bse3DI	GCAATG	3 cut(s)	363, 432, 447
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	2 cut(s)	162, 401
BseMI	GCAATG	3 cut(s)	363, 432, 447
BseMII	CTCAG	2 cut(s)	280, 425
BseNI	ACTGG	2 cut(s)	86, 204
BseXI	GCAGC	4 cut(s)	82, 85, 227, 439
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	134
BsnI	GGCC	1 cut(s)	108
Bsp1286I	GDGCHC	2 cut(s)	164, 505
Bsp143I	GATC	2 cut(s)	19, 507
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	2 cut(s)	279, 424
BspFNI	CGCG	1 cut(s)	478
BspPI	GGATC	2 cut(s)	27, 515
BsrDI	GCAATG	3 cut(s)	363, 432, 447
BsrI	ACTGG	2 cut(s)	86, 204
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	2 cut(s)	19, 507
BssT1I	CCWWGG	1 cut(s)	391
Bst4CI	ACNGT	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	266, 411
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	2 cut(s)	162, 401
BstFNI	CGCG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	480
BstKTI	GATC	2 cut(s)	22, 510
BstMBI	GATC	2 cut(s)	19, 507
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 193, 215, 278, 477
BstNSI	RCATGY	1 cut(s)	249
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	4 cut(s)	82, 85, 227, 439
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	1 cut(s)	507
BstXI	CCANNNNNNTGG	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	507
BsuRI	GGCC	1 cut(s)	108
BtgI	CCRYGG	1 cut(s)	391
BtsCI	GGATG	2 cut(s)	162, 401
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	3 cut(s)	39, 211, 357
Cac8I	GCNNGC	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	533
CfoI	GCGC	1 cut(s)	480
CviAII	CATG	2 cut(s)	246, 392
DdeI	CTNAG	2 cut(s)	266, 411
DpnI	GATC	2 cut(s)	21, 509
DpnII	GATC	2 cut(s)	19, 507
Ecl136II	GAGCTC	1 cut(s)	162
Eco130I	CCWWGG	1 cut(s)	391
Eco24I	GRGCYC	2 cut(s)	164, 505
Eco53kI	GAGCTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	162
EcoT14I	CCWWGG	1 cut(s)	391
EcoT22I	ATGCAT	1 cut(s)	473
EcoT38I	GRGCYC	2 cut(s)	164, 505
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	2 cut(s)	249, 395
FaiI	YATR	6 cut(s)	148, 153, 247, 303, 305, 393
FatI	CATG	2 cut(s)	245, 391
FauNDI	CATATG	1 cut(s)	303
Fnu4HI	GCNGC	4 cut(s)	71, 74, 216, 453
FokI	GGATG	2 cut(s)	169, 408
FriOI	GRGCYC	2 cut(s)	164, 505
Fsp4HI	GCNGC	4 cut(s)	71, 74, 216, 453
GlaI	GCGC	1 cut(s)	479
GluI	GCNGC	4 cut(s)	71, 74, 216, 453
HaeIII	GGCC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	480
Hin1II	CATG	2 cut(s)	249, 395
Hin6I	GCGC	1 cut(s)	478
HinP1I	GCGC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	517
Hpy188I	TCNGA	5 cut(s)	19, 269, 414, 465, 507
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	196, 405, 437, 471
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 193, 215, 278, 477
HpyF3I	CTNAG	2 cut(s)	266, 411
Hsp92II	CATG	2 cut(s)	249, 395
HspAI	GCGC	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	19, 507
LpnPI	CCDG	6 cut(s)	52, 99, 105, 155, 217, 513
Lsp1109I	GCAGC	4 cut(s)	82, 85, 227, 439
LweI	GCATC	4 cut(s)	274, 360, 458, 480
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	21, 509
MboI	GATC	2 cut(s)	19, 507
MboII	GAAGA	6 cut(s)	16, 56, 59, 62, 309, 346
MflI	RGATCY	1 cut(s)	507
MhlI	GDGCHC	2 cut(s)	164, 505
MluCI	AATT	1 cut(s)	232
MnlI	CCTC	2 cut(s)	119, 325
Mph1103I	ATGCAT	1 cut(s)	473
MseI	TTAA	1 cut(s)	485
MspA1I	CMGCKG	2 cut(s)	66, 218
Mva1269I	GAATGC	1 cut(s)	134
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	5 cut(s)	67, 193, 215, 278, 477
NcoI	CCATGG	1 cut(s)	391
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	2 cut(s)	19, 507
NlaIII	CATG	2 cut(s)	249, 395
NsiI	ATGCAT	1 cut(s)	473
NspI	RCATGY	1 cut(s)	249
PciI	ACATGT	1 cut(s)	245
PctI	GAATGC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	72, 75, 217, 454
PscI	ACATGT	1 cut(s)	245
Psp124BI	GAGCTC	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	1 cut(s)	507
PvuII	CAGCTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	71, 74, 216, 453
Sau3AI	GATC	2 cut(s)	19, 507
SduI	GDGCHC	2 cut(s)	164, 505
SetI	ASST	6 cut(s)	164, 220, 227, 412, 521, 532
SfaNI	GCATC	4 cut(s)	274, 360, 458, 480
Sse9I	AATT	1 cut(s)	232
SsiI	CCGC	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	164
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	11, 111
TasI	AATT	1 cut(s)	232
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	3 cut(s)	46, 211, 364
TseI	GCWGC	4 cut(s)	70, 73, 215, 452
TspDTI	ATGAA	3 cut(s)	17, 141, 539
TspRI	CASTG	3 cut(s)	46, 211, 364
XceI	RCATGY	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.