FvH4_7g21280

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000352
Physical Location & Seq
Forward (+)
17100448 .. 17101321
874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21280.t1

Sequence Viewer

Length: 624 bp
ATGGCAACCTCCAACTCCTCTAGTTCTACTGTCAATTTGAAGCTCATTGATAGGAAGCGCAAAAAAGTCTTGTTTGCTGAAGCAGGCAAGGATTTTGTGGATTTTCTCTTCACTCTTCTGTCTTTGCCTGTTGGCACTGTCATTAGGCTCCTCACTAAGGATGGAATGGTTGGTTGCTTAGGGAAACTTTACAACAGCGTCGAGAATCTCAACGACACATACATGCAGCCAAATCTCAACAAGGATGTCCTTCTGAAACCTAGGGCACCAGTTGGTGGTTCTGATAATGTTTTTCTTCCCTTGTTGACCAACAATGAATCAAATGCTAAGAAGTTTTACATGTATGTTACTCCACCAGCGACGTCTACGGGAGAAAGGGCCGGCCATGGAGCCGGCTATGTGAGAGAAGTTGCTACGTACATGATAATGGATGATTTGGAAGTAATGCCTATGTCCACCATTTCAAGTATTACTCTTCTTAACAACTTCAATGTTAAGGATGTTGGTACCCTCGAAGAGAGGGTGGTACCTCTAGACATGGATAAGGGTTTGAAATTGCTGAAGAAATCGTTGCAGTCCAAGTCAGGAGTTCTCACGAACGTGTTCCTTGGGAGAAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

208

Amino Acids

22.73

Weight (kDa)

9.23

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 9 - 91 1.2e-24 Protein of unknown function (DUF674)
DUF674 PF05056 110 - 166 3.4e-08 Protein of unknown function (DUF674)
DUF674 PF05056 131 - 204 7e-12 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 365
Acc65I GGTACC 2 cut(s) 506, 526
AccB1I GGYRCC 3 cut(s) 265, 506, 526
AccB7I CCANNNNNTGG 1 cut(s) 275
AccI GTMKAC 1 cut(s) 365
AcoI YGGCCR 1 cut(s) 382
AcuI CTGAAG 2 cut(s) 99, 581
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 3 cut(s) 419, 508, 528
AfiI CCNNNNNNNGG 2 cut(s) 157, 275
AflIII ACRYGT 2 cut(s) 339, 600
AgsI TTSAA 4 cut(s) 40, 465, 490, 553
AleI CACNNNNGTG 1 cut(s) 599
AluBI AGCT 1 cut(s) 43
AluI AGCT 1 cut(s) 43
AoxI GGCC 2 cut(s) 378, 382
ApeKI GCWGC 1 cut(s) 226
Asp700I GAANNNNTTC 1 cut(s) 602
Asp718I GGTACC 2 cut(s) 506, 526
AspA2I CCTAGG 1 cut(s) 260
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 378
AvrII CCTAGG 1 cut(s) 260
BaeGI GKGCMC 1 cut(s) 268
BanI GGYRCC 3 cut(s) 265, 506, 526
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 155
BfaI CTAG 3 cut(s) 21, 261, 533
BisI GCNGC 1 cut(s) 227
BlnI CCTAGG 1 cut(s) 260
BlsI GCNGC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 378
BmiI GGNNCC 5 cut(s) 149, 267, 391, 508, 528
Bpu10I CCTNAGC 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 417
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 260, 385, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 275
Bse118I RCCGGY 2 cut(s) 380, 392
Bse1I ACTGG 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 260, 385, 607
BseGI GGATG 4 cut(s) 166, 250, 436, 505
BseLI CCNNNNNNNGG 2 cut(s) 157, 275
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 7, 140
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 1 cut(s) 238
BshFI GGCC 2 cut(s) 380, 384
BshNI GGYRCC 3 cut(s) 265, 506, 526
BsiSI CCGG 2 cut(s) 381, 393
BslI CCNNNNNNNGG 2 cut(s) 157, 275
BsnI GGCC 2 cut(s) 380, 384
Bsp1286I GDGCHC 1 cut(s) 268
Bsp19I CCATGG 1 cut(s) 385
BspANI GGCC 2 cut(s) 380, 384
BspLI GGNNCC 5 cut(s) 149, 267, 391, 508, 528
BspT107I GGYRCC 3 cut(s) 265, 506, 526
BsrFI RCCGGY 2 cut(s) 380, 392
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 2 cut(s) 380, 392
BssECI CCNNGG 3 cut(s) 260, 385, 607
BssNI GRCGYC 1 cut(s) 362
BssT1I CCWWGG 3 cut(s) 260, 385, 607
Bst4CI ACNGT 2 cut(s) 31, 139
Bst6I CTCTTC 4 cut(s) 113, 120, 480, 510
BstACI GRCGYC 1 cut(s) 362
BstBAI YACGTR 1 cut(s) 417
BstC8I GCNNGC 3 cut(s) 85, 382, 394
BstDEI CTNAG 3 cut(s) 156, 178, 327
BstDSI CCRYGG 1 cut(s) 385
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 4 cut(s) 166, 250, 436, 505
BstHHI GCGC 1 cut(s) 60
BstNSI RCATGY 2 cut(s) 226, 343
BstSLI GKGCMC 1 cut(s) 268
BstSNI TACGTA 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 380, 384
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 4 cut(s) 166, 250, 436, 505
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 85, 382, 394
CfoI GCGC 1 cut(s) 60
Cfr10I RCCGGY 2 cut(s) 380, 392
Cfr13I GGNCC 1 cut(s) 378
CseI GACGC 1 cut(s) 187
Csp6I GTAC 3 cut(s) 418, 507, 527
CviAII CATG 5 cut(s) 223, 340, 386, 421, 538
CviJI RGCY 7 cut(s) 43, 148, 229, 380, 384, 392, 396
CviKI_1 RGCY 7 cut(s) 43, 148, 229, 380, 384, 392, 396
CviQI GTAC 3 cut(s) 418, 507, 527
DdeI CTNAG 3 cut(s) 156, 178, 327
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 4 cut(s) 113, 120, 480, 510
EarI CTCTTC 4 cut(s) 113, 120, 480, 510
Eco105I TACGTA 1 cut(s) 417
Eco130I CCWWGG 3 cut(s) 260, 385, 607
Eco57I CTGAAG 2 cut(s) 99, 581
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoT14I CCWWGG 3 cut(s) 260, 385, 607
ErhI CCWWGG 3 cut(s) 260, 385, 607
FaeI CATG 5 cut(s) 226, 343, 389, 424, 541
FaiI YATR 9 cut(s) 220, 224, 341, 345, 387, 399, 422, 452, 539
FatI CATG 5 cut(s) 222, 339, 385, 420, 537
FblI GTMKAC 1 cut(s) 365
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 4 cut(s) 173, 257, 443, 512
FseI GGCCGGCC 1 cut(s) 384
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 3 cut(s) 21, 261, 533
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 227
HaeIII GGCC 2 cut(s) 380, 384
HapII CCGG 2 cut(s) 381, 393
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 5 cut(s) 226, 343, 389, 424, 541
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 306
HindII GTYRAC 1 cut(s) 306
HinfI GANTC 2 cut(s) 205, 317
HpaII CCGG 2 cut(s) 381, 393
Hpy166II GTNNAC 3 cut(s) 306, 366, 456
Hpy188I TCNGA 2 cut(s) 255, 283
Hpy188III TCNNGA 4 cut(s) 202, 533, 585, 595
Hpy8I GTNNAC 3 cut(s) 306, 366, 456
Hpy99I CGWCG 2 cut(s) 203, 364
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 31, 139
HpyCH4IV ACGT 3 cut(s) 362, 416, 600
HpyCH4V TGCA 2 cut(s) 226, 574
HpyF3I CTNAG 3 cut(s) 156, 178, 327
HpySE526I ACGT 3 cut(s) 362, 416, 600
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 5 cut(s) 226, 343, 389, 424, 541
HspAI GCGC 1 cut(s) 58
KpnI GGTACC 2 cut(s) 510, 530
KroI GCCGGC 2 cut(s) 380, 392
KroNI GCCGGC 2 cut(s) 382, 394
LmnI GCTCC 2 cut(s) 153, 389
LpnPI CCDG 7 cut(s) 69, 141, 282, 369, 394, 406, 570
Lsp1109I GCAGC 1 cut(s) 238
MaeI CTAG 3 cut(s) 21, 261, 533
MaeII ACGT 3 cut(s) 362, 416, 600
MaeIII GTNAC 1 cut(s) 346
MboII GAAGA 6 cut(s) 100, 107, 287, 467, 527, 574
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 34, 554
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 6 cut(s) 19, 28, 161, 513, 521, 540
MroNI GCCGGC 2 cut(s) 380, 392
MroXI GAANNNNTTC 1 cut(s) 602
MseI TTAA 3 cut(s) 480, 495, 622
MslI CAYNNNNRTG 3 cut(s) 221, 425, 599
MspI CCGG 2 cut(s) 381, 393
NaeI GCCGGC 2 cut(s) 382, 394
NcoI CCATGG 1 cut(s) 385
NgoMIV GCCGGC 2 cut(s) 380, 392
NlaIII CATG 5 cut(s) 226, 343, 389, 424, 541
NlaIV GGNNCC 5 cut(s) 149, 267, 391, 508, 528
NspI RCATGY 2 cut(s) 226, 343
OliI CACNNNNGTG 1 cut(s) 599
PciI ACATGT 1 cut(s) 339
PdiI GCCGGC 2 cut(s) 382, 394
PdmI GAANNNNTTC 1 cut(s) 602
PfeI GAWTC 2 cut(s) 205, 317
PflMI CCANNNNNTGG 1 cut(s) 275
PkrI GCNGC 1 cut(s) 228
Ppu21I YACGTR 1 cut(s) 417
PscI ACATGT 1 cut(s) 339
PspN4I GGNNCC 5 cut(s) 149, 267, 391, 508, 528
PspPI GGNCC 1 cut(s) 378
RigI GGCCGGCC 1 cut(s) 384
RsaI GTAC 3 cut(s) 419, 508, 528
RsaNI GTAC 3 cut(s) 418, 507, 527
RseI CAYNNNNRTG 3 cut(s) 221, 425, 599
SaqAI TTAA 3 cut(s) 480, 495, 622
SatI GCNGC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 378
SduI GDGCHC 1 cut(s) 268
SetI ASST 7 cut(s) 11, 45, 262, 365, 419, 532, 603
SmiMI CAYNNNNRTG 3 cut(s) 221, 425, 599
SnaBI TACGTA 1 cut(s) 417
Sse9I AATT 2 cut(s) 34, 554
SspMI CTAG 3 cut(s) 21, 261, 533
StyI CCWWGG 3 cut(s) 260, 385, 607
TaaI ACNGT 2 cut(s) 31, 139
TaiI ACGT 3 cut(s) 365, 419, 603
TaqI TCGA 2 cut(s) 201, 513
TasI AATT 2 cut(s) 34, 554
TfiI GAWTC 2 cut(s) 205, 317
Tru1I TTAA 3 cut(s) 480, 495, 622
Tru9I TTAA 3 cut(s) 480, 495, 622
TscAI CASTG 1 cut(s) 142
TseI GCWGC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 155
XbaI TCTAGA 1 cut(s) 532
XceI RCATGY 2 cut(s) 226, 343
XmaJI CCTAGG 1 cut(s) 260
XmiI GTMKAC 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 602
XspI CTAG 3 cut(s) 21, 261, 533
ZraI GACGTC 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.