Rmu_sc0009967.1_g000002

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009967.1
OG0000352
Physical Location & Seq
Forward (+)
6486 .. 7142
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009967.1_g000002.1.cds

Sequence Viewer

Length: 657 bp
atggcaacctcctccagttccactgttagcctgaagctcctcatcgatacaaagagagaaaaggttctgtttgccgaagccggtaaggactttgtcgattttctgttcaccctgctctctttgcctgtaggcacagtcatcaggcttctctctaaggatggcatggtgggtagctttggaaaactgtaccagagcgtcgaaaatctgaatgatacatacatgcaacccaatctcaacaaggacgtccttctgaaacctaaggcaccacttgctggatccaacatccttaagctgagcaacactgaaccaagtgctcagaaaccgatctacatgtgtgcgagtgggaattaccacaagtatgtgtccgacgaccctaaagtcaagtgtccatcgtgcaataacaccttgagcagcaagacaacttttgttgcttcaccgactacctcagaagaaacttatggcgccggtggagtagggtttgtcaaaggcgttgtgacatatatgataatggatgatttggaggtgaaaccgatgtccaccatctcaagtctagctctgctgaacaggttaaatgttaaggatgttggtgcacttgaagagaaggttgttaatcttggcatgcaagaggtgagaaatcatttccttatgggcttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

218

Amino Acids

23.69

Weight (kDa)

8.32

Isoelectric Point (pI)

34.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AatII GACGTC 1 cut(s) 246
AccB1I GGYRCC 2 cut(s) 262, 461
AccB7I CCANNNNNTGG 1 cut(s) 272
AclWI GGATC 2 cut(s) 270, 283
AcuI CTGAAG 1 cut(s) 53
AcyI GRCGYC 2 cut(s) 243, 462
AfaI GTAC 1 cut(s) 188
AfiI CCNNNNNNNGG 1 cut(s) 272
AflII CTTAAG 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 1 cut(s) 596
AluBI AGCT 4 cut(s) 37, 174, 292, 554
AluI AGCT 4 cut(s) 37, 174, 292, 554
Alw21I GWGCWC 2 cut(s) 316, 592
Alw44I GTGCAC 1 cut(s) 588
AlwI GGATC 2 cut(s) 270, 283
ApaLI GTGCAC 1 cut(s) 588
ApeKI GCWGC 1 cut(s) 411
Asp700I GAANNNNTTC 1 cut(s) 63
AspLEI GCGC 1 cut(s) 464
AsuHPI GGTGA 4 cut(s) 100, 426, 535, 640
AxyI CCTNAGG 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 592
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 2 cut(s) 262, 461
Bbv12I GWGCWC 2 cut(s) 316, 592
BbvI GCAGC 1 cut(s) 423
BccI CCATC 3 cut(s) 152, 397, 548
BfaI CTAG 1 cut(s) 551
BfmI CTRYAG 1 cut(s) 126
BfoI RGCGCY 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 287
BisI GCNGC 1 cut(s) 412
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 413
BmiI GGNNCC 3 cut(s) 264, 277, 463
Bpu1102I GCTNAGC 1 cut(s) 293
BpuEI CTTGAG 2 cut(s) 427, 529
Bsa29I ATCGAT 1 cut(s) 45
BsaHI GRCGYC 2 cut(s) 243, 462
Bsc4I CCNNNNNNNGG 1 cut(s) 272
Bse118I RCCGGY 2 cut(s) 80, 464
Bse1I ACTGG 1 cut(s) 15
Bse21I CCTNAGG 1 cut(s) 258
BseCI ATCGAT 1 cut(s) 45
BseGI GGATG 4 cut(s) 163, 282, 517, 586
BseLI CCNNNNNNNGG 1 cut(s) 272
BseMII CTCAG 3 cut(s) 284, 329, 459
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 29
BseSI GKGCMC 1 cut(s) 592
BseXI GCAGC 1 cut(s) 423
BshNI GGYRCC 2 cut(s) 262, 461
BshVI ATCGAT 1 cut(s) 45
BsiHKAI GWGCWC 2 cut(s) 316, 592
BsiSI CCGG 2 cut(s) 81, 465
BslI CCNNNNNNNGG 1 cut(s) 272
Bsp1286I GDGCHC 2 cut(s) 316, 592
Bsp143I GATC 2 cut(s) 275, 324
Bsp1720I GCTNAGC 1 cut(s) 293
BspCNI CTCAG 3 cut(s) 285, 328, 458
BspDI ATCGAT 1 cut(s) 45
BspLI GGNNCC 3 cut(s) 264, 277, 463
BspPI GGATC 2 cut(s) 270, 283
BspT107I GGYRCC 2 cut(s) 262, 461
BspTI CTTAAG 1 cut(s) 287
BsrFI RCCGGY 2 cut(s) 80, 464
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 2 cut(s) 80, 464
BssMI GATC 2 cut(s) 275, 324
BssNI GRCGYC 2 cut(s) 243, 462
Bst4CI ACNGT 3 cut(s) 25, 136, 186
Bst6I CTCTTC 1 cut(s) 591
BstACI GRCGYC 2 cut(s) 243, 462
BstAFI CTTAAG 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 269
BstC8I GCNNGC 1 cut(s) 620
BstDEI CTNAG 5 cut(s) 153, 258, 293, 315, 445
BstF5I GGATG 4 cut(s) 163, 282, 517, 586
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 2 cut(s) 278, 327
BstMBI GATC 2 cut(s) 275, 324
BstMWI GCNNNNNNNGC 2 cut(s) 121, 269
BstNSI RCATGY 3 cut(s) 223, 334, 622
BstSFI CTRYAG 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 592
BstV1I GCAGC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 275
BstYI RGATCY 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 4 cut(s) 163, 282, 517, 586
BtsIMutI CAGTG 2 cut(s) 21, 300
Cac8I GCNNGC 1 cut(s) 620
CfoI GCGC 1 cut(s) 464
Cfr10I RCCGGY 2 cut(s) 80, 464
ClaI ATCGAT 1 cut(s) 45
CseI GACGC 1 cut(s) 184
Csp6I GTAC 1 cut(s) 187
CviAII CATG 4 cut(s) 163, 220, 331, 619
CviJI RGCY 8 cut(s) 30, 37, 80, 145, 174, 292, 554, 651
CviKI_1 RGCY 8 cut(s) 30, 37, 80, 145, 174, 292, 554, 651
CviQI GTAC 1 cut(s) 187
DdeI CTNAG 5 cut(s) 153, 258, 293, 315, 445
DinI GGCGCC 1 cut(s) 463
DpnI GATC 2 cut(s) 277, 326
DpnII GATC 2 cut(s) 275, 324
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 591
EarI CTCTTC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 53
Eco81I CCTNAGG 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 463
EheI GGCGCC 1 cut(s) 463
FaeI CATG 4 cut(s) 166, 223, 334, 622
FatI CATG 4 cut(s) 162, 219, 330, 618
Fnu4HI GCNGC 1 cut(s) 412
FokI GGATG 4 cut(s) 170, 269, 524, 593
Fsp4HI GCNGC 1 cut(s) 412
FspBI CTAG 1 cut(s) 551
GlaI GCGC 1 cut(s) 463
GluI GCNGC 1 cut(s) 412
HaeII RGCGCY 1 cut(s) 465
HapII CCGG 2 cut(s) 81, 465
HgaI GACGC 1 cut(s) 184
HhaI GCGC 1 cut(s) 464
Hin1I GRCGYC 2 cut(s) 243, 462
Hin1II CATG 4 cut(s) 166, 223, 334, 622
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HpaII CCGG 2 cut(s) 81, 465
HphI GGTGA 4 cut(s) 100, 426, 535, 640
Hpy166II GTNNAC 3 cut(s) 108, 537, 590
Hpy188I TCNGA 5 cut(s) 207, 252, 318, 367, 448
Hpy8I GTNNAC 3 cut(s) 108, 537, 590
Hpy99I CGWCG 2 cut(s) 200, 371
HpyAV CCTTC 2 cut(s) 257, 595
HpyCH4III ACNGT 3 cut(s) 25, 136, 186
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 4 cut(s) 223, 396, 590, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 269
HpyF3I CTNAG 5 cut(s) 153, 258, 293, 315, 445
HpySE526I ACGT 1 cut(s) 243
Hsp92I GRCGYC 2 cut(s) 243, 462
Hsp92II CATG 4 cut(s) 166, 223, 334, 622
HspAI GCGC 1 cut(s) 462
KasI GGCGCC 1 cut(s) 461
Kzo9I GATC 2 cut(s) 275, 324
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 423
MaeI CTAG 1 cut(s) 551
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 493
MalI GATC 2 cut(s) 277, 326
MboI GATC 2 cut(s) 275, 324
MboII GAAGA 2 cut(s) 461, 608
MflI RGATCY 1 cut(s) 275
MhlI GDGCHC 2 cut(s) 316, 592
MluCI AATT 1 cut(s) 346
Mly113I GGCGCC 1 cut(s) 462
MmeI TCCRAC 2 cut(s) 303, 390
MnlI CCTC 6 cut(s) 19, 22, 50, 454, 514, 619
MroXI GAANNNNTTC 1 cut(s) 63
MseI TTAA 4 cut(s) 288, 569, 576, 609
MslI CAYNNNNRTG 1 cut(s) 357
MspCI CTTAAG 1 cut(s) 287
MspI CCGG 2 cut(s) 81, 465
MwoI GCNNNNNNNGC 2 cut(s) 121, 269
NarI GGCGCC 1 cut(s) 462
NdeII GATC 2 cut(s) 275, 324
NlaIII CATG 4 cut(s) 166, 223, 334, 622
NlaIV GGNNCC 3 cut(s) 264, 277, 463
NmuCI GTSAC 1 cut(s) 493
NspI RCATGY 3 cut(s) 223, 334, 622
PaeI GCATGC 1 cut(s) 622
PciI ACATGT 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 63
PflFI GACNNNGTC 1 cut(s) 92
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 465
PscI ACATGT 1 cut(s) 330
PspN4I GGNNCC 3 cut(s) 264, 277, 463
PsuI RGATCY 1 cut(s) 275
PsyI GACNNNGTC 1 cut(s) 92
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 4 cut(s) 288, 569, 576, 609
SatI GCNGC 1 cut(s) 412
Sau3AI GATC 2 cut(s) 275, 324
SduI GDGCHC 2 cut(s) 316, 592
SfcI CTRYAG 1 cut(s) 126
SfoI GGCGCC 1 cut(s) 463
SgrAI CRCCGGYG 1 cut(s) 464
SmiMI CAYNNNNRTG 1 cut(s) 357
SmlI CTYRAG 3 cut(s) 287, 406, 544
SmoI CTYRAG 3 cut(s) 287, 406, 544
SphI GCATGC 1 cut(s) 622
Sse9I AATT 1 cut(s) 346
SspDI GGCGCC 1 cut(s) 461
SspMI CTAG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 25, 136, 186
TaiI ACGT 1 cut(s) 246
TaqI TCGA 3 cut(s) 45, 96, 198
TasI AATT 1 cut(s) 346
Tru1I TTAA 4 cut(s) 288, 569, 576, 609
Tru9I TTAA 4 cut(s) 288, 569, 576, 609
TscAI CASTG 2 cut(s) 28, 307
TseFI GTSAC 1 cut(s) 493
TseI GCWGC 1 cut(s) 411
Tsp45I GTSAC 1 cut(s) 493
TspRI CASTG 2 cut(s) 28, 307
Tth111I GACNNNGTC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 272
Vha464I CTTAAG 1 cut(s) 287
VneI GTGCAC 1 cut(s) 588
XceI RCATGY 3 cut(s) 223, 334, 622
XmnI GAANNNNTTC 1 cut(s) 63
XspI CTAG 1 cut(s) 551
ZraI GACGTC 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.