Rh1AG332200

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000352
Physical Location & Seq
Forward (+)
56735594 .. 56743113
7520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG332200.1

Sequence Viewer

Length: 762 bp
ATGGCAACCTCTAACTCCTGTGCTGTTAGCCTGAAGCTCTTGATTGATTCTAAGCGTCGGAAGGTTCTCTTTGCTGAAGCCGGTAAGGATTTTGTGGATTTTCTTTTCACGCTTCTCTCTTTGCCTGTTGGTACTGTCATTAGGCTTCTTTCCAAGGGTGGGATTGTTGGTAGCTTTGGTAAACTGTATGAGAGTGTTGAAAATCTTGATTATACATATATCCAACCCACAATAAACAAGGATATCCTGCTCAAACCCACGGCACCAGTTGCTGGACCTAATATCCTCAAGTTAGCCAACAACGTTGAATCAAGTGCTCGAAAGGAGCTCTACTTGTGTAGTCGTTCAAATAGTCACACTAAAGCCCACCCGTACGTGACTGAAAACCCCGATGAAATATGTCCATCGTGTTCATACACCATGAACCTCCGAACTACATATGTCGGTCAGCCGACTACCACGGAAGCAATTTCTGGTGCCGGCGCTGCTGGATATGTCAAAGGCGTTATGACATACATGATAATGGATGATCTGGAGGTGAAGCCCATGTCCACCATTTCAAGCATCACTATGCTTAACAGGTTTAATATCAAGGATGTTGGGGCCCTTGAAGAGAAGGTTGTTGAACTTAGCATGGATGAGGTAAGAATTAATCTGTGTAATACTTGCTTTTTTAAGGAAATTCCTTTTTCAACAATTAAGATGAACATATGCATAGTGGCCAGTGGATCGATATTGATTTTTGGTTTGTATTCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

253

Amino Acids

27.72

Weight (kDa)

7.51

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 8 - 232 1.3e-42 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 262, 476
AccB7I CCANNNNNTGG 1 cut(s) 272
AclI AACGTT 1 cut(s) 303
AclWI GGATC 1 cut(s) 736
AcoI YGGCCR 1 cut(s) 720
AcsI RAATTY 1 cut(s) 681
AcuI CTGAAG 2 cut(s) 53, 96
AfaI GTAC 2 cut(s) 133, 374
AfiI CCNNNNNNNGG 2 cut(s) 159, 272
AgsI TTSAA 8 cut(s) 200, 308, 348, 561, 611, 626, 693, 756
AluBI AGCT 3 cut(s) 37, 174, 328
AluI AGCT 3 cut(s) 37, 174, 328
Alw21I GWGCWC 2 cut(s) 319, 330
AlwI GGATC 1 cut(s) 736
AlwNI CAGNNNCTG 1 cut(s) 272
AoxI GGCC 2 cut(s) 603, 720
ApaI GGGCCC 1 cut(s) 607
ApeKI GCWGC 1 cut(s) 485
ApoI RAATTY 1 cut(s) 681
AseI ATTAAT 1 cut(s) 651
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 3 cut(s) 275, 603, 604
AsuHPI GGTGA 1 cut(s) 550
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 607
BalI TGGCCA 1 cut(s) 722
BanI GGYRCC 2 cut(s) 262, 476
BanII GRGCYC 2 cut(s) 330, 607
Bbv12I GWGCWC 2 cut(s) 319, 330
BbvI GCAGC 1 cut(s) 472
BccI CCATC 1 cut(s) 412
BceAI ACGGC 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 486
BisI GCNGC 1 cut(s) 486
BlsI GCNGC 1 cut(s) 487
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 3 cut(s) 275, 603, 604
BmiI GGNNCC 4 cut(s) 264, 478, 604, 605
BmsI GCATC 1 cut(s) 573
BpmI CTGGAG 1 cut(s) 554
BpuEI CTTGAG 1 cut(s) 272
Bsa29I ATCGAT 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 153, 258, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 272
Bse118I RCCGGY 2 cut(s) 80, 479
Bse1I ACTGG 2 cut(s) 266, 723
BseCI ATCGAT 1 cut(s) 731
BseDI CCNNGG 3 cut(s) 153, 258, 459
BseGI GGATG 3 cut(s) 532, 601, 643
BseLI CCNNNNNNNGG 2 cut(s) 159, 272
BseNI ACTGG 2 cut(s) 266, 723
BseSI GKGCMC 1 cut(s) 607
BseXI GCAGC 1 cut(s) 472
BshFI GGCC 2 cut(s) 605, 722
BshNI GGYRCC 2 cut(s) 262, 476
BshVI ATCGAT 1 cut(s) 731
BsiHKAI GWGCWC 2 cut(s) 319, 330
BsiSI CCGG 2 cut(s) 81, 480
BsiWI CGTACG 1 cut(s) 372
BslI CCNNNNNNNGG 2 cut(s) 159, 272
BsnI GGCC 2 cut(s) 605, 722
Bsp120I GGGCCC 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 319, 330, 607
Bsp143I GATC 2 cut(s) 529, 728
BspANI GGCC 2 cut(s) 605, 722
BspDI ATCGAT 1 cut(s) 731
BspLI GGNNCC 4 cut(s) 264, 478, 604, 605
BspPI GGATC 1 cut(s) 736
BspT107I GGYRCC 2 cut(s) 262, 476
BsrFI RCCGGY 2 cut(s) 80, 479
BsrI ACTGG 2 cut(s) 266, 723
BssAI RCCGGY 2 cut(s) 80, 479
BssECI CCNNGG 3 cut(s) 153, 258, 459
BssMI GATC 2 cut(s) 529, 728
BssT1I CCWWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 136, 186
Bst6I CTCTTC 1 cut(s) 606
BstAPI GCANNNNNTGC 1 cut(s) 269
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 2 cut(s) 51, 629
BstDSI CCRYGG 2 cut(s) 258, 459
BstF5I GGATG 3 cut(s) 532, 601, 643
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 2 cut(s) 532, 731
BstMBI GATC 2 cut(s) 529, 728
BstMWI GCNNNNNNNGC 2 cut(s) 269, 485
BstSLI GKGCMC 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 472
Bsu15I ATCGAT 1 cut(s) 731
BsuRI GGCC 2 cut(s) 605, 722
BsuTUI ATCGAT 1 cut(s) 731
BtgI CCRYGG 2 cut(s) 258, 459
BtsCI GGATG 3 cut(s) 532, 601, 643
BtsIMutI CAGTG 1 cut(s) 730
Cac8I GCNNGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 2 cut(s) 80, 479
Cfr13I GGNCC 3 cut(s) 275, 603, 604
ClaI ATCGAT 1 cut(s) 731
CseI GACGC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 132, 373
CviAII CATG 4 cut(s) 421, 517, 547, 634
CviQI GTAC 2 cut(s) 132, 373
DdeI CTNAG 2 cut(s) 51, 629
DpnI GATC 2 cut(s) 531, 730
DpnII GATC 2 cut(s) 529, 728
EaeI YGGCCR 1 cut(s) 720
Eam1104I CTCTTC 1 cut(s) 606
EarI CTCTTC 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 330, 607
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 328
Eco57I CTGAAG 2 cut(s) 53, 96
EcoICRI GAGCTC 1 cut(s) 328
EcoO109I RGGNCCY 2 cut(s) 603, 604
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 716
EcoT38I GRGCYC 2 cut(s) 330, 607
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 4 cut(s) 424, 520, 550, 637
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FatI CATG 4 cut(s) 420, 516, 546, 633
FauNDI CATATG 2 cut(s) 439, 710
Fnu4HI GCNGC 1 cut(s) 486
FokI GGATG 3 cut(s) 539, 608, 650
FriOI GRGCYC 2 cut(s) 330, 607
Fsp4HI GCNGC 1 cut(s) 486
GlaI GCGC 1 cut(s) 484
GluI GCNGC 1 cut(s) 486
GsuI CTGGAG 1 cut(s) 554
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 2 cut(s) 605, 722
HapII CCGG 2 cut(s) 81, 480
HgaI GACGC 1 cut(s) 44
HhaI GCGC 1 cut(s) 485
Hin1II CATG 4 cut(s) 424, 520, 550, 637
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HinfI GANTC 2 cut(s) 47, 308
HpaII CCGG 2 cut(s) 81, 480
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 182, 552
Hpy188I TCNGA 2 cut(s) 60, 431
Hpy188III TCNNGA 3 cut(s) 40, 206, 533
Hpy8I GTNNAC 2 cut(s) 182, 552
Hpy99I CGWCG 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 55, 610
HpyCH4III ACNGT 2 cut(s) 136, 186
HpyCH4IV ACGT 2 cut(s) 303, 375
HpyCH4V TGCA 1 cut(s) 714
HpyF10VI GCNNNNNNNGC 2 cut(s) 269, 485
HpyF3I CTNAG 2 cut(s) 51, 629
HpySE526I ACGT 2 cut(s) 303, 375
Hsp92II CATG 4 cut(s) 424, 520, 550, 637
HspAI GCGC 1 cut(s) 483
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Kzo9I GATC 2 cut(s) 529, 728
LmnI GCTCC 1 cut(s) 325
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 1 cut(s) 573
MaeII ACGT 2 cut(s) 303, 375
MaeIII GTNAC 2 cut(s) 353, 376
MalI GATC 2 cut(s) 531, 730
MboI GATC 2 cut(s) 529, 728
MboII GAAGA 1 cut(s) 623
MhlI GDGCHC 3 cut(s) 319, 330, 607
MlsI TGGCCA 1 cut(s) 722
MluCI AATT 4 cut(s) 468, 648, 681, 696
MluNI TGGCCA 1 cut(s) 722
MmeI TCCRAC 2 cut(s) 38, 247
MnlI CCTC 5 cut(s) 19, 296, 437, 529, 634
Mox20I TGGCCA 1 cut(s) 722
Mph1103I ATGCAT 1 cut(s) 716
MroNI GCCGGC 1 cut(s) 479
MscI TGGCCA 1 cut(s) 722
MseI TTAA 6 cut(s) 576, 585, 651, 675, 699, 760
MslI CAYNNNNRTG 2 cut(s) 521, 569
Msp20I TGGCCA 1 cut(s) 722
MspI CCGG 2 cut(s) 81, 480
MwoI GCNNNNNNNGC 2 cut(s) 269, 485
NaeI GCCGGC 1 cut(s) 481
NdeI CATATG 2 cut(s) 439, 710
NdeII GATC 2 cut(s) 529, 728
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 4 cut(s) 424, 520, 550, 637
NlaIV GGNNCC 4 cut(s) 264, 478, 604, 605
NmuCI GTSAC 2 cut(s) 353, 376
NsiI ATGCAT 1 cut(s) 716
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 47, 308
Pfl23II CGTACG 1 cut(s) 372
PflMI CCANNNNNTGG 1 cut(s) 272
PkrI GCNGC 1 cut(s) 487
Ppu21I YACGTR 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 651
Psp124BI GAGCTC 1 cut(s) 330
Psp1406I AACGTT 1 cut(s) 303
PspLI CGTACG 1 cut(s) 372
PspN4I GGNNCC 4 cut(s) 264, 478, 604, 605
PspOMI GGGCCC 1 cut(s) 603
PspPI GGNCC 3 cut(s) 275, 603, 604
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 133, 374
RsaNI GTAC 2 cut(s) 132, 373
RseI CAYNNNNRTG 2 cut(s) 521, 569
SacI GAGCTC 1 cut(s) 330
SaqAI TTAA 6 cut(s) 576, 585, 651, 675, 699, 760
SatI GCNGC 1 cut(s) 486
Sau3AI GATC 2 cut(s) 529, 728
Sau96I GGNCC 3 cut(s) 275, 603, 604
SduI GDGCHC 3 cut(s) 319, 330, 607
SfaNI GCATC 1 cut(s) 573
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 521, 569
SmlI CTYRAG 1 cut(s) 287
SmoI CTYRAG 1 cut(s) 287
Sse9I AATT 4 cut(s) 468, 648, 681, 696
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 2 cut(s) 136, 186
TaiI ACGT 2 cut(s) 306, 378
TaqI TCGA 2 cut(s) 319, 731
TaqII GACCGA 1 cut(s) 434
TasI AATT 4 cut(s) 468, 648, 681, 696
TfiI GAWTC 2 cut(s) 47, 308
Tru1I TTAA 6 cut(s) 576, 585, 651, 675, 699, 760
Tru9I TTAA 6 cut(s) 576, 585, 651, 675, 699, 760
TscAI CASTG 1 cut(s) 730
TseFI GTSAC 2 cut(s) 353, 376
TseI GCWGC 1 cut(s) 485
Tsp45I GTSAC 2 cut(s) 353, 376
TspDTI ATGAA 4 cut(s) 402, 408, 437, 719
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 1 cut(s) 730
Van91I CCANNNNNTGG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 275
VspI ATTAAT 1 cut(s) 651
XapI RAATTY 1 cut(s) 681
Zsp2I ATGCAT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.