Rh6CG032400

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000352
Physical Location & Seq
Reverse (-)
3002863 .. 3003213
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG032400.1

Sequence Viewer

Length: 351 bp
ATGGAAACCCCCAACTCTAAAACCATCACCGTGAAGCTCCTCGTCGACAAAAGAAGCCAAAAGGTTTTGTTCGCCGAAGCCGGCAAGGACTTCGTGGACTTCTCCCTTTTATCTTTCCCCGTCGGCACTCTTGTCAGGCTTTTCTCCAAAAATGGCATGGTCGGAAGCCTATGCAAACTCTACGAGAGTTTCGAAAATCTCAACGGCATGTATATGCAGCAGCCTAATCTCAACAGAGACGTCCTCCTCAAACCCAAAGAACCAGCCGGTGTTCCTAATAACCTAGGTTTGTTGACCAACGTGGAATCTCGATCCATCTATCAGTGTTCAAGAAGAGGCTATATATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

116

Amino Acids

13.07

Weight (kDa)

9.39

Isoelectric Point (pI)

32.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 6 - 89 2.4e-19 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 243
AccI GTMKAC 1 cut(s) 45
AclWI GGATC 1 cut(s) 306
AcyI GRCGYC 1 cut(s) 240
AgsI TTSAA 1 cut(s) 330
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 306
ApeKI GCWGC 2 cut(s) 217, 220
AspA2I CCTAGG 1 cut(s) 283
AsuHPI GGTGA 1 cut(s) 19
AsuII TTCGAA 1 cut(s) 192
AvrII CCTAGG 1 cut(s) 283
BbvI GCAGC 2 cut(s) 229, 232
BccI CCATC 2 cut(s) 32, 323
BceAI ACGGC 1 cut(s) 220
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 1 cut(s) 284
BisI GCNGC 2 cut(s) 218, 221
BlnI CCTAGG 1 cut(s) 283
BlsI GCNGC 2 cut(s) 219, 222
BplI GAGNNNNNCTC 2 cut(s) 228, 260
Bpu14I TTCGAA 1 cut(s) 192
BsaHI GRCGYC 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 283
Bse118I RCCGGY 2 cut(s) 80, 266
BseDI CCNNGG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 29, 236
BseXI GCAGC 2 cut(s) 229, 232
BsiSI CCGG 2 cut(s) 81, 267
BsmAI GTCTC 1 cut(s) 231
BsmBI CGTCTC 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 192
Bsp143I GATC 1 cut(s) 311
BspPI GGATC 1 cut(s) 306
BspT104I TTCGAA 1 cut(s) 192
BsrFI RCCGGY 2 cut(s) 80, 266
BssAI RCCGGY 2 cut(s) 80, 266
BssECI CCNNGG 1 cut(s) 283
BssMI GATC 1 cut(s) 311
BssNI GRCGYC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 1 cut(s) 31
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 240
BstBI TTCGAA 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 211
BstV1I GCAGC 2 cut(s) 229, 232
BtsIMutI CAGTG 1 cut(s) 329
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 2 cut(s) 80, 266
CviAII CATG 2 cut(s) 157, 208
CviJI RGCY 8 cut(s) 37, 57, 80, 139, 168, 223, 266, 339
CviKI_1 RGCY 8 cut(s) 37, 57, 80, 139, 168, 223, 266, 339
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 231
FaeI CATG 2 cut(s) 160, 211
FaiI YATR 7 cut(s) 158, 172, 209, 213, 215, 342, 344
FatI CATG 2 cut(s) 156, 207
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 218, 221
Fsp4HI GCNGC 2 cut(s) 218, 221
FspBI CTAG 1 cut(s) 284
GluI GCNGC 2 cut(s) 218, 221
HapII CCGG 2 cut(s) 81, 267
Hin1I GRCGYC 1 cut(s) 240
Hin1II CATG 2 cut(s) 160, 211
HincII GTYRAC 2 cut(s) 46, 294
HindII GTYRAC 2 cut(s) 46, 294
HinfI GANTC 1 cut(s) 305
HpaII CCGG 2 cut(s) 81, 267
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 3 cut(s) 46, 97, 294
Hpy188I TCNGA 2 cut(s) 164, 350
Hpy188III TCNNGA 2 cut(s) 309, 330
Hpy8I GTNNAC 3 cut(s) 46, 97, 294
Hpy99I CGWCG 2 cut(s) 47, 125
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 2 cut(s) 240, 300
HpyCH4V TGCA 2 cut(s) 174, 217
HpySE526I ACGT 2 cut(s) 240, 300
Hsp92I GRCGYC 1 cut(s) 240
Hsp92II CATG 2 cut(s) 160, 211
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 94, 121, 276, 280
Lsp1109I GCAGC 2 cut(s) 229, 232
MaeI CTAG 1 cut(s) 284
MaeII ACGT 2 cut(s) 240, 300
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 4 cut(s) 50, 254, 257, 329
MroNI GCCGGC 1 cut(s) 80
MslI CAYNNNNRTG 2 cut(s) 29, 212
MspI CCGG 2 cut(s) 81, 267
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 1 cut(s) 311
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 160, 211
NspI RCATGY 1 cut(s) 211
NspV TTCGAA 1 cut(s) 192
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 2 cut(s) 219, 222
RseI CAYNNNNRTG 2 cut(s) 29, 212
SalI GTCGAC 1 cut(s) 44
SatI GCNGC 2 cut(s) 218, 221
Sau3AI GATC 1 cut(s) 311
SetI ASST 6 cut(s) 39, 66, 243, 285, 289, 303
SfuI TTCGAA 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 29, 212
SspMI CTAG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 2 cut(s) 243, 303
TaqI TCGA 3 cut(s) 45, 192, 310
TfiI GAWTC 1 cut(s) 305
TscAI CASTG 1 cut(s) 329
TseI GCWGC 2 cut(s) 217, 220
TspRI CASTG 1 cut(s) 329
XceI RCATGY 1 cut(s) 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmaJI CCTAGG 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 284
ZraI GACGTC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.