Rmu_co8520123.1_g000003

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8520123.1
OG0000352
Physical Location & Seq
Forward (+)
5574 .. 5819
246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8520123.1_g000003.1.cds

Sequence Viewer

Length: 246 bp
atgtccatcgtgttcacaagccatgaacctccgactacttatgtcggtcagccaactaccacggaagcaacttctggtgccggcgctactggatatgtcaaaggtgttgtgacattcatgataatggatgatctggagatgaagcccatgtccaccatttcaagaatcactatgcttaacagattcaatatcaaggatgttggggcccttgaagagaaggttgttgaacttggcatggatgaggta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

82

Amino Acids

8.92

Weight (kDa)

4.57

Isoelectric Point (pI)

28.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 77
AgsI TTSAA 4 cut(s) 162, 187, 212, 227
AoxI GGCC 1 cut(s) 204
ApaI GGGCCC 1 cut(s) 208
AspLEI GCGC 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 204, 205
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 208
BccI CCATC 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 204, 205
BmiI GGNNCC 3 cut(s) 79, 205, 206
BpmI CTGGAG 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 60
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 3 cut(s) 133, 202, 244
BseNI ACTGG 1 cut(s) 94
BseSI GKGCMC 1 cut(s) 208
BshFI GGCC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 77
BsiSI CCGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 206
Bsp120I GGGCCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 1 cut(s) 130
BspANI GGCC 1 cut(s) 206
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 3 cut(s) 79, 205, 206
BspT107I GGYRCC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 94
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 130
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 82
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 133, 202, 244
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 1 cut(s) 86
BstKTI GATC 1 cut(s) 133
BstMBI GATC 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 208
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 3 cut(s) 133, 202, 244
Cac8I GCNNGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 117
CfoI GCGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 204, 205
CviAII CATG 4 cut(s) 23, 118, 148, 235
CviJI RGCY 4 cut(s) 21, 52, 145, 206
CviKI_1 RGCY 4 cut(s) 21, 52, 145, 206
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 208
EcoO109I RGGNCCY 2 cut(s) 204, 205
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 4 cut(s) 26, 121, 151, 238
FaiI YATR 7 cut(s) 24, 42, 96, 119, 149, 173, 236
FatI CATG 4 cut(s) 22, 117, 147, 234
FokI GGATG 2 cut(s) 140, 209
FriOI GRGCYC 1 cut(s) 208
GlaI GCGC 1 cut(s) 85
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 86
Hin1II CATG 4 cut(s) 26, 121, 151, 238
Hin6I GCGC 1 cut(s) 84
HinP1I GCGC 1 cut(s) 84
HinfI GANTC 2 cut(s) 165, 183
HpaII CCGG 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 15, 153
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 3 cut(s) 118, 134, 162
Hpy8I GTNNAC 2 cut(s) 15, 153
HpyAV CCTTC 1 cut(s) 211
Hsp92II CATG 4 cut(s) 26, 121, 151, 238
HspAI GCGC 1 cut(s) 84
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 60, 75, 94, 119
MaeIII GTNAC 1 cut(s) 109
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 2 cut(s) 39, 235
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 81
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 1 cut(s) 130
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 4 cut(s) 26, 121, 151, 238
NlaIV GGNNCC 3 cut(s) 79, 205, 206
NmuCI GTSAC 1 cut(s) 109
PagI TCATGA 1 cut(s) 117
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 165, 183
PspN4I GGNNCC 3 cut(s) 79, 205, 206
PspOMI GGGCCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 204, 205
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 177
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 2 cut(s) 204, 205
SduI GDGCHC 1 cut(s) 208
SetI ASST 4 cut(s) 31, 106, 222, 246
SmiMI CAYNNNNRTG 1 cut(s) 122
TaqII GACCGA 1 cut(s) 35
TfiI GAWTC 2 cut(s) 165, 183
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 3 cut(s) 39, 106, 155
TspGWI ACGGA 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.