Rorug01G0323100

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000352
Physical Location & Seq
Forward (+)
44197676 .. 44198506
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0323100.1

Sequence Viewer

Length: 504 bp
ATGATAAGATGTGGAGAGACTGATCTCAAACTGGACCTGGAATGGTGGCCTCTGCTATGGCATGGTTCGAAGAGTACTCTTGAGCTAACTGAGTTTCTAAGGCCACGGATGGGGGTCGACTTAGGTACAGGTGGGGTGATTAGGGATGCTCAAGGTCTTTTCGTTGCTGCGTTCTCTCACAGGGCTACGTTTGTTAGCTCTCCCCTACATATAGAGTTATTGGCTATGAAATATGGTCTGGAGTTGTTGCTAGCCATGAATATCACAAGGGCAGTGGTAAAAAGTGACTGCTTAATCGCGGCTCGTCCAACCTACTTCGGCTCGTCAAAACCTAAGTACTTCTCTGCAAAAGATATTAGAGATGGGTGGGTGAGCAAAACCACGCGCTCAGTGAGTATATCAGTGATCACCACGGGCACCCTAATGGCCTTCTCTAGCCCTATACCACCGTGTGACACATCCTTACTTCGACATAATCAATCAAGAAGTTCTCATGTTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

167

Amino Acids

18.5

Weight (kDa)

9.33

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 416
AccI GTMKAC 1 cut(s) 117
AccII CGCG 2 cut(s) 299, 385
AciI CCGC 1 cut(s) 299
AdeI CACNNNGTG 1 cut(s) 452
AfaI GTAC 3 cut(s) 76, 127, 338
AfiI CCNNNNNNNGG 1 cut(s) 110
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 85, 198
AluI AGCT 2 cut(s) 85, 198
Alw26I GTCTC 1 cut(s) 11
AoxI GGCC 3 cut(s) 47, 101, 426
ApeKI GCWGC 1 cut(s) 167
AspLEI GCGC 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 3 cut(s) 148, 382, 400
AsuII TTCGAA 1 cut(s) 68
AsuNHI GCTAGC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 419
BanI GGYRCC 1 cut(s) 416
BbvI GCAGC 1 cut(s) 154
BccI CCATC 2 cut(s) 103, 356
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 251, 435
BisI GCNGC 2 cut(s) 168, 300
BlsI GCNGC 2 cut(s) 169, 301
BmcAI AGTACT 2 cut(s) 76, 338
Bme1390I CCNGG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 1 cut(s) 38
BmsI GCATC 1 cut(s) 136
BmtI GCTAGC 1 cut(s) 254
BpmI CTGGAG 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 2 cut(s) 101, 135
BsaJI CCNNGG 2 cut(s) 104, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 104, 411
BseGI GGATG 3 cut(s) 114, 151, 458
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMII CTCAG 2 cut(s) 81, 402
BseNI ACTGG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 1 cut(s) 154
Bsh1236I CGCG 2 cut(s) 299, 385
BshFI GGCC 3 cut(s) 49, 103, 428
BshNI GGYRCC 1 cut(s) 416
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 1 cut(s) 11
BsnI GGCC 3 cut(s) 49, 103, 428
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 419
Bsp143I GATC 2 cut(s) 22, 405
BspACI CCGC 1 cut(s) 299
BspANI GGCC 3 cut(s) 49, 103, 428
BspCNI CTCAG 2 cut(s) 82, 401
BspFNI CGCG 2 cut(s) 299, 385
BspLI GGNNCC 1 cut(s) 418
BspOI GCTAGC 1 cut(s) 254
BspT104I TTCGAA 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 416
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 104, 411
BssMI GATC 2 cut(s) 22, 405
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 450
Bst6I CTCTTC 1 cut(s) 65
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 5 cut(s) 90, 98, 121, 333, 388
BstDSI CCRYGG 2 cut(s) 104, 411
BstF5I GGATG 3 cut(s) 114, 151, 458
BstFNI CGCG 2 cut(s) 299, 385
BstHHI GCGC 1 cut(s) 387
BstKTI GATC 2 cut(s) 25, 408
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 2 cut(s) 22, 405
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 419
BstUI CGCG 2 cut(s) 299, 385
BstV1I GCAGC 1 cut(s) 154
BsuRI GGCC 3 cut(s) 49, 103, 428
BtgI CCRYGG 2 cut(s) 104, 411
BtsCI GGATG 3 cut(s) 114, 151, 458
BtsI GCAGTG 1 cut(s) 279
BtsIMutI CAGTG 3 cut(s) 279, 396, 408
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 387
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 75, 126, 337
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 4 cut(s) 62, 256, 494, 501
CviQI GTAC 3 cut(s) 75, 126, 337
DdeI CTNAG 5 cut(s) 90, 98, 121, 333, 388
DpnI GATC 2 cut(s) 24, 407
DpnII GATC 2 cut(s) 22, 405
DraIII CACNNNGTG 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 4 cut(s) 65, 259, 497, 504
FatI CATG 4 cut(s) 61, 255, 493, 500
FbaI TGATCA 1 cut(s) 405
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 168, 300
FokI GGATG 3 cut(s) 121, 158, 445
Fsp4HI GCNGC 2 cut(s) 168, 300
FspBI CTAG 2 cut(s) 251, 435
GlaI GCGC 1 cut(s) 386
GluI GCNGC 2 cut(s) 168, 300
GsuI CTGGAG 1 cut(s) 260
HaeIII GGCC 3 cut(s) 49, 103, 428
HhaI GCGC 1 cut(s) 387
Hin1II CATG 4 cut(s) 65, 259, 497, 504
Hin6I GCGC 1 cut(s) 385
HinP1I GCGC 1 cut(s) 385
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HphI GGTGA 3 cut(s) 148, 382, 400
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 80, 239, 483
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 1 cut(s) 450
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 1 cut(s) 347
HpyF3I CTNAG 5 cut(s) 90, 98, 121, 333, 388
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 4 cut(s) 65, 259, 497, 504
HspAI GCGC 1 cut(s) 385
Ksp22I TGATCA 1 cut(s) 405
Kzo9I GATC 2 cut(s) 22, 405
LpnPI CCDG 6 cut(s) 17, 23, 50, 114, 166, 224
Lsp1109I GCAGC 1 cut(s) 154
LweI GCATC 1 cut(s) 136
MaeI CTAG 2 cut(s) 251, 435
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 2 cut(s) 284, 452
MalI GATC 2 cut(s) 24, 407
MboI GATC 2 cut(s) 22, 405
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 419
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 1 cut(s) 60
MseI TTAA 1 cut(s) 293
MslI CAYNNNNRTG 1 cut(s) 422
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 299, 385
NdeII GATC 2 cut(s) 22, 405
NheI GCTAGC 1 cut(s) 250
NlaIII CATG 4 cut(s) 65, 259, 497, 504
NlaIV GGNNCC 1 cut(s) 418
NmuCI GTSAC 2 cut(s) 284, 452
NspV TTCGAA 1 cut(s) 68
PkrI GCNGC 2 cut(s) 169, 301
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 1 cut(s) 34
RsaI GTAC 3 cut(s) 76, 127, 338
RsaNI GTAC 3 cut(s) 75, 126, 337
RseI CAYNNNNRTG 1 cut(s) 422
SalI GTCGAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 2 cut(s) 168, 300
Sau3AI GATC 2 cut(s) 22, 405
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 2 cut(s) 76, 338
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 1 cut(s) 419
SetI ASST 9 cut(s) 39, 87, 127, 133, 157, 191, 200, 314, 334
SfaNI GCATC 1 cut(s) 136
SfuI TTCGAA 1 cut(s) 68
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 422
SmlI CTYRAG 2 cut(s) 80, 150
SmoI CTYRAG 2 cut(s) 80, 150
SsiI CCGC 1 cut(s) 299
SspMI CTAG 2 cut(s) 251, 435
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 450
TaiI ACGT 1 cut(s) 191
TaqI TCGA 3 cut(s) 68, 117, 469
TatI WGTACW 2 cut(s) 74, 336
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 3 cut(s) 279, 396, 408
TseFI GTSAC 2 cut(s) 284, 452
TseI GCWGC 1 cut(s) 167
Tsp45I GTSAC 2 cut(s) 284, 452
TspDTI ATGAA 2 cut(s) 242, 272
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 3 cut(s) 279, 396, 408
VpaK11BI GGWCC 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 2 cut(s) 251, 435
ZrmI AGTACT 2 cut(s) 76, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.