FvH4_7g21610

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000352
Physical Location & Seq
Reverse (-)
17242319 .. 17245196
2878 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21610.t1

Sequence Viewer

Length: 870 bp
ATGACGACCTCCAACTCCAAAACCATCACCGTAAAGCTCCTCGTCGACAAAAGAAACCAAAAGGTTTTGTTCGCCGAAGCCGGCAAGGACTTCGTGGACTTTCTCTTCGCCCTTTTATCTTTCCCCGTCGGCACTGTCGTCCGACTCCTCTCCACAAACGGCATGGTCGGAAGCCTGGGCAAGCTCTACGAGAGCTTCGAAAATCTCAACGACATGTATATGCAGCCCAATCTCAAGAGAGGCATCCTCCTCAAACCCAAAGAACCAGCCGATGTCCTTATAAGTAATAACCTAGATGAACTGGAGGTGAAGCCTAATTGTACCATTGCCAGTATTCTTCAGCTGGAGAAGTTTAATGTGAAGTGTATTTGTGACCTTGAAGAGAAGAACGTTGAAGTAAGCATGGATGAGAGCATTCAAAGTCTTGGCGAGAATTACATGCAACCTAATCTTGACAAAAATATCCTGCTAAACCCCATGTCTGTTGGTGTTGATCTTCATCATTTGTTGACAGACGAAGCCAATGAAGAGGAATTGAGCAAGCACAATGAAGCCACTGGTAACAAACCAAGCCAATATGATACTAATGATCAGTTCTGCGTATGCGTGTACTGTTTGAACACGAACGATATCCCCAGATCGACGGGATACAACAATAACGTCCACGGAAACATTATGTGGCCGACTGCTCTGGAACTGTTTGCCCTGAGTGAAACTATGCTATGTTCACCCCGGCGACTTGTGTTGCTTCGCCAACTAATTTTAAAAAGAAACGTCCAGCTGTACCTGAGGGGATTGAAATTGCTTAAGGCATCAATGAAGTCGAAGTCGGTTCTCAGCCATGTGTTTATTGGAAAGAAAGCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

290

Amino Acids

32.5

Weight (kDa)

6.54

Isoelectric Point (pI)

32.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 6 - 91 5.1e-22 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 281
AccI GTMKAC 1 cut(s) 45
AclI AACGTT 1 cut(s) 390
AcoI YGGCCR 1 cut(s) 680
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 3 cut(s) 322, 611, 785
AflII CTTAAG 1 cut(s) 806
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 5 cut(s) 380, 395, 419, 619, 799
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 5 cut(s) 37, 184, 195, 343, 781
AluI AGCT 5 cut(s) 37, 184, 195, 343, 781
AoxI GGCC 1 cut(s) 680
ApeKI GCWGC 2 cut(s) 223, 863
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 3 cut(s) 19, 319, 720
AsuII TTCGAA 1 cut(s) 198
AxyI CCTNAGG 1 cut(s) 788
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 176
BciVI GTATCC 1 cut(s) 641
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 1 cut(s) 733
BfaI CTAG 1 cut(s) 293
BfrI CTTAAG 1 cut(s) 806
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 2 cut(s) 224, 864
BlsI GCNGC 2 cut(s) 225, 865
Bme1390I CCNGG 2 cut(s) 176, 733
BmrFI CCNGG 2 cut(s) 176, 733
BmsI GCATC 2 cut(s) 252, 821
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 2 cut(s) 323, 365
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 733
BsaBI GATNNNNATC 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 175, 664, 731
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 3 cut(s) 306, 330, 562
Bse21I CCTNAGG 1 cut(s) 788
Bse3DI GCAATG 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 498
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 3 cut(s) 175, 664, 731
BseGI GGATG 2 cut(s) 243, 412
BseJI GATNNNNATC 1 cut(s) 498
BseMI GCAATG 1 cut(s) 324
BseMII CTCAG 3 cut(s) 698, 779, 850
BseNI ACTGG 3 cut(s) 306, 330, 562
BseRI GAGGAG 3 cut(s) 29, 137, 239
BseXI GCAGC 1 cut(s) 235
BshFI GGCC 1 cut(s) 682
BsiSI CCGG 2 cut(s) 81, 733
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 1 cut(s) 682
Bsp119I TTCGAA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 493, 589, 638
BspANI GGCC 1 cut(s) 682
BspCNI CTCAG 3 cut(s) 699, 780, 849
BspT104I TTCGAA 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 324
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 3 cut(s) 306, 330, 562
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 3 cut(s) 175, 664, 731
BssMI GATC 3 cut(s) 493, 589, 638
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 4 cut(s) 31, 136, 614, 699
Bst6I CTCTTC 3 cut(s) 110, 375, 522
BstAFI CTTAAG 1 cut(s) 806
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 82, 182, 542
BstDEI CTNAG 3 cut(s) 707, 788, 836
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 2 cut(s) 243, 412
BstKTI GATC 3 cut(s) 496, 592, 641
BstMBI GATC 3 cut(s) 493, 589, 638
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 2 cut(s) 217, 442
BstSCI CCNGG 2 cut(s) 174, 731
BstV1I GCAGC 1 cut(s) 235
Bsu36I CCTNAGG 1 cut(s) 788
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 1 cut(s) 682
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 2 cut(s) 243, 412
BtsIMutI CAGTG 2 cut(s) 132, 555
Cac8I GCNNGC 3 cut(s) 82, 182, 542
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 3 cut(s) 321, 610, 784
CviAII CATG 7 cut(s) 163, 214, 403, 439, 478, 842, 867
CviQI GTAC 3 cut(s) 321, 610, 784
DdeI CTNAG 3 cut(s) 707, 788, 836
DpnI GATC 3 cut(s) 495, 591, 640
DpnII GATC 3 cut(s) 493, 589, 638
DraI TTTAAA 1 cut(s) 765
EaeI YGGCCR 1 cut(s) 680
Eam1104I CTCTTC 3 cut(s) 110, 375, 522
EarI CTCTTC 3 cut(s) 110, 375, 522
Eco32I GATATC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 323
Eco81I CCTNAGG 1 cut(s) 788
EcoRII CCWGG 1 cut(s) 174
EcoRV GATATC 1 cut(s) 631
FaeI CATG 7 cut(s) 166, 217, 406, 442, 481, 845, 870
FatI CATG 7 cut(s) 162, 213, 402, 438, 477, 841, 866
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 2 cut(s) 224, 864
FokI GGATG 2 cut(s) 230, 419
Fsp4HI GCNGC 2 cut(s) 224, 864
FspBI CTAG 1 cut(s) 293
GluI GCNGC 2 cut(s) 224, 864
GsuI CTGGAG 2 cut(s) 323, 365
HaeIII GGCC 1 cut(s) 682
HapII CCGG 2 cut(s) 81, 733
Hin1II CATG 7 cut(s) 166, 217, 406, 442, 481, 845, 870
HincII GTYRAC 2 cut(s) 46, 510
HindII GTYRAC 2 cut(s) 46, 510
HinfI GANTC 1 cut(s) 144
HpaII CCGG 2 cut(s) 81, 733
HphI GGTGA 3 cut(s) 19, 319, 720
Hpy166II GTNNAC 6 cut(s) 46, 97, 510, 610, 664, 728
Hpy188I TCNGA 2 cut(s) 143, 170
Hpy188III TCNNGA 3 cut(s) 235, 452, 692
Hpy8I GTNNAC 6 cut(s) 46, 97, 510, 610, 664, 728
Hpy99I CGWCG 3 cut(s) 47, 131, 646
HpyCH4III ACNGT 4 cut(s) 31, 136, 614, 699
HpyCH4IV ACGT 3 cut(s) 390, 660, 774
HpyCH4V TGCA 2 cut(s) 223, 442
HpyF3I CTNAG 3 cut(s) 707, 788, 836
HpySE526I ACGT 3 cut(s) 390, 660, 774
Hsp92II CATG 7 cut(s) 166, 217, 406, 442, 481, 845, 870
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 493, 589, 638
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 235
LweI GCATC 2 cut(s) 252, 821
MaeI CTAG 1 cut(s) 293
MaeII ACGT 3 cut(s) 390, 660, 774
MaeIII GTNAC 2 cut(s) 371, 560
MalI GATC 3 cut(s) 495, 591, 640
MboI GATC 3 cut(s) 493, 589, 638
MboII GAAGA 6 cut(s) 97, 329, 392, 397, 488, 539
MluCI AATT 5 cut(s) 316, 433, 533, 759, 800
MlyI GAGTC 1 cut(s) 138
MmeI TCCRAC 3 cut(s) 36, 148, 166
MnlI CCTC 9 cut(s) 19, 50, 158, 233, 257, 260, 298, 523, 783
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 3 cut(s) 354, 764, 807
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 2 cut(s) 343, 781
MspCI CTTAAG 1 cut(s) 806
MspI CCGG 2 cut(s) 81, 733
MspR9I CCNGG 2 cut(s) 176, 733
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 176
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 733
NdeII GATC 3 cut(s) 493, 589, 638
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 7 cut(s) 166, 217, 406, 442, 481, 845, 870
NmuCI GTSAC 1 cut(s) 371
NspI RCATGY 2 cut(s) 217, 442
NspV TTCGAA 1 cut(s) 198
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 195
PctI GAATGC 1 cut(s) 414
PdiI GCCGGC 1 cut(s) 82
PkrI GCNGC 2 cut(s) 225, 865
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PscI ACATGT 1 cut(s) 213
PsiI TTATAA 1 cut(s) 281
Psp1406I AACGTT 1 cut(s) 390
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PvuII CAGCTG 2 cut(s) 343, 781
RsaI GTAC 3 cut(s) 322, 611, 785
RsaNI GTAC 3 cut(s) 321, 610, 784
RseI CAYNNNNRTG 1 cut(s) 218
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 3 cut(s) 354, 764, 807
SatI GCNGC 2 cut(s) 224, 864
Sau3AI GATC 3 cut(s) 493, 589, 638
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 176, 733
SfaNI GCATC 2 cut(s) 252, 821
SfuI TTCGAA 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 233, 806
SmoI CTYRAG 2 cut(s) 233, 806
Sse9I AATT 5 cut(s) 316, 433, 533, 759, 800
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 174, 731
TaaI ACNGT 4 cut(s) 31, 136, 614, 699
TaiI ACGT 3 cut(s) 393, 663, 777
TaqI TCGA 4 cut(s) 45, 198, 641, 824
TasI AATT 5 cut(s) 316, 433, 533, 759, 800
TatI WGTACW 1 cut(s) 609
Tru1I TTAA 3 cut(s) 354, 764, 807
Tru9I TTAA 3 cut(s) 354, 764, 807
TscAI CASTG 2 cut(s) 139, 562
TseFI GTSAC 1 cut(s) 371
TseI GCWGC 2 cut(s) 223, 863
Tsp45I GTSAC 1 cut(s) 371
TspDTI ATGAA 5 cut(s) 312, 488, 540, 564, 833
TspGWI ACGGA 1 cut(s) 681
TspRI CASTG 2 cut(s) 139, 562
Vha464I CTTAAG 1 cut(s) 806
XceI RCATGY 2 cut(s) 217, 442
XcmI CCANNNNNNNNNTGG 2 cut(s) 160, 848
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.