Rw0G001530

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00044
OG0000352
Physical Location & Seq
Forward (+)
45632 .. 46403
772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G001530.1

Sequence Viewer

Length: 312 bp
ATGTCCAACCCGGCAAGGTATTTTGCTCCACCAGCGACTACGGGAGAAAGGGCGACCCATGGAGGCGGCTATGTGAGAGGCGTCGTTACGTACATGATAATGGATGATTTGGAAGTAAAGCCTATGTCCACCATTTCAAGTATAACTCTGCTTAACAACTTCAACGTTAAGGATGTTGGTACCCTTGAAGATAAGGTGGTTCCTCTAGACATGGATAAGGGTTTGAAATTGCTGAAGAAATCATTGCAGTCCAAGTCAGGAGACAGGAGTTCTCAACTTCTCACGAAAGTGTTCCTTGGGAGGAATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

103

Amino Acids

11.27

Weight (kDa)

9.52

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 15 - 99 4.5e-11 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 179
AccB1I GGYRCC 1 cut(s) 179
AciI CCGC 1 cut(s) 66
AclI AACGTT 1 cut(s) 165
AcuI CTGAAG 1 cut(s) 254
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 2 cut(s) 92, 181
AgsI TTSAA 4 cut(s) 138, 163, 188, 226
AleI CACNNNNGTG 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 255
Asp700I GAANNNNTTC 1 cut(s) 290
Asp718I GGTACC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 11
BanI GGYRCC 1 cut(s) 179
BcnI CCSGG 1 cut(s) 11
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 206
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 181, 201
BmrFI CCNGG 1 cut(s) 11
BpuMI CCSGG 1 cut(s) 11
BsaAI YACGTR 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 58, 295
Bse3DI GCAATG 1 cut(s) 242
BseDI CCNNGG 2 cut(s) 58, 295
BseGI GGATG 2 cut(s) 109, 178
BseMI GCAATG 1 cut(s) 242
BshNI GGYRCC 1 cut(s) 179
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 181, 201
BspT107I GGYRCC 1 cut(s) 179
BsrDI GCAATG 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 58, 295
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 2 cut(s) 58, 295
BstACI GRCGYC 1 cut(s) 81
BstBAI YACGTR 1 cut(s) 90
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 109, 178
BstMAI GTCTC 1 cut(s) 255
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 9
BstSNI TACGTA 1 cut(s) 90
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 2 cut(s) 109, 178
CseI GACGC 1 cut(s) 70
Csp6I GTAC 2 cut(s) 91, 180
CviAII CATG 3 cut(s) 59, 94, 211
CviJI RGCY 2 cut(s) 69, 121
CviKI_1 RGCY 2 cut(s) 69, 121
CviQI GTAC 2 cut(s) 91, 180
Eco105I TACGTA 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 58, 295
Eco57I CTGAAG 1 cut(s) 254
EcoT14I CCWWGG 2 cut(s) 58, 295
ErhI CCWWGG 2 cut(s) 58, 295
FaeI CATG 3 cut(s) 62, 97, 214
FaiI YATR 6 cut(s) 60, 72, 95, 125, 143, 212
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FatI CATG 3 cut(s) 58, 93, 210
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 2 cut(s) 116, 185
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 206
GluI GCNGC 1 cut(s) 67
HapII CCGG 1 cut(s) 11
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 3 cut(s) 62, 97, 214
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 129
Hpy188III TCNNGA 3 cut(s) 206, 258, 283
Hpy8I GTNNAC 1 cut(s) 129
Hpy99I CGWCG 1 cut(s) 86
HpyCH4IV ACGT 2 cut(s) 89, 165
HpyCH4V TGCA 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 2 cut(s) 89, 165
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 3 cut(s) 62, 97, 214
KpnI GGTACC 1 cut(s) 183
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 4 cut(s) 24, 45, 243, 250
MaeI CTAG 1 cut(s) 206
MaeII ACGT 2 cut(s) 89, 165
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 2 cut(s) 200, 247
MluCI AATT 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 4 cut(s) 56, 71, 213, 294
MroXI GAANNNNTTC 1 cut(s) 290
MseI TTAA 3 cut(s) 153, 168, 310
MslI CAYNNNNRTG 2 cut(s) 98, 287
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 11
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 58
NlaIII CATG 3 cut(s) 62, 97, 214
NlaIV GGNNCC 2 cut(s) 181, 201
OliI CACNNNNGTG 1 cut(s) 287
PdmI GAANNNNTTC 1 cut(s) 290
PkrI GCNGC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 165
PspN4I GGNNCC 2 cut(s) 181, 201
RsaI GTAC 2 cut(s) 92, 181
RsaNI GTAC 2 cut(s) 91, 180
RseI CAYNNNNRTG 2 cut(s) 98, 287
SaqAI TTAA 3 cut(s) 153, 168, 310
SatI GCNGC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 11
SetI ASST 4 cut(s) 20, 92, 168, 198
SmiMI CAYNNNNRTG 2 cut(s) 98, 287
SnaBI TACGTA 1 cut(s) 90
Sse9I AATT 1 cut(s) 227
SsiI CCGC 1 cut(s) 66
SspI AATATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 2 cut(s) 58, 295
TaiI ACGT 2 cut(s) 92, 168
TasI AATT 1 cut(s) 227
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 3 cut(s) 153, 168, 310
Tru9I TTAA 3 cut(s) 153, 168, 310
XbaI TCTAGA 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 290
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.