Rmu_sc0011598.1_g000003

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011598.1
OG0000352
Physical Location & Seq
Forward (+)
5993 .. 8728
2736 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011598.1_g000003.1.cds

Sequence Viewer

Length: 852 bp
atggccaactctaaatctacagtcagcctgaagctactcatcgatacaaagcgtcaaaaggttctgtttgctgaagcgggtaaggactttgtggattttcttttcacccttctctctttgccagttggcactgttattaggcttctatcaaaggatggcatggttggtagttttggtaaactgtatgacagtgttgaaaatctagatttaacatatatggaacccaaactaaacaaggatatcctgctcaaacccaaggcacctgttgctggacctaatatcctcggtttgttggacttggccaacgttgacgaaccagctgctagaaataaggtgttctacatgtgttcgaaaaggaataataataatattaataggcgtggacagtgtaactgttccggctctgcgcctaccgcccacctttatgtgactgaagatcctaacgaacaatgtccaaagtgcaatcaccatatgtcttctcaggcgacttatgttggtcaaccaaagaccacgcctatgtccatggccactactatttcaaccataactctgctcaacaggttcaatgttaaggatgttggcaccctcgaagagaaggttgtagatcttggcatgaatgagagagagagagagagagagagaatggaagagagagaaaccataggggacttcgccggagtccgatcaccggcagccggattccggtcaccggccgccggattccggccaacttcgccggaacccggtgagcggtcgccggaatccggccaattttcgccggaatccggtcaccggccgccggattccgatcaccggctaccacccaccggaaagtttttttgcccccaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

283

Amino Acids

31.22

Weight (kDa)

8.17

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 259, 581
AccBSI CCGCTC 1 cut(s) 751
AciI CCGC 5 cut(s) 77, 414, 714, 751, 797
AclI AACGTT 1 cut(s) 306
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 7 cut(s) 3, 300, 525, 711, 725, 766, 794
AcuI CTGAAG 3 cut(s) 50, 93, 453
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 3 cut(s) 197, 540, 565
AluBI AGCT 2 cut(s) 34, 320
AluI AGCT 2 cut(s) 34, 320
AlwI GGATC 1 cut(s) 431
AoxI GGCC 7 cut(s) 3, 300, 525, 711, 725, 766, 794
ApeKI GCWGC 2 cut(s) 320, 692
AseI ATTAAT 1 cut(s) 372
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 1 cut(s) 744
AsuHPI GGTGA 7 cut(s) 97, 458, 678, 699, 758, 782, 803
AsuII TTCGAA 1 cut(s) 350
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 3 cut(s) 5, 302, 527
BanI GGYRCC 2 cut(s) 259, 581
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 307, 704
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcnI CCSGG 1 cut(s) 744
BfaI CTAG 2 cut(s) 203, 324
BfmI CTRYAG 1 cut(s) 18
BglII AGATCT 1 cut(s) 604
BisI GCNGC 4 cut(s) 321, 693, 714, 797
BlsI GCNGC 4 cut(s) 322, 694, 715, 798
Bme1390I CCNGG 1 cut(s) 744
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 4 cut(s) 222, 261, 583, 741
BmrFI CCNGG 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 468
Bpu14I TTCGAA 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 744
Bsa29I ATCGAT 1 cut(s) 42
BsaBI GATNNNNATC 1 cut(s) 807
BsaJI CCNNGG 3 cut(s) 255, 283, 522
BsaWI WCCGGW 3 cut(s) 702, 785, 827
Bse118I RCCGGY 4 cut(s) 688, 709, 792, 813
Bse1I ACTGG 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 807
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 255, 283, 522
BseGI GGATG 2 cut(s) 160, 580
BseJI GATNNNNATC 1 cut(s) 807
BseMII CTCAG 1 cut(s) 494
BseNI ACTGG 1 cut(s) 122
BseX3I CGGCCG 2 cut(s) 711, 794
BseXI GCAGC 2 cut(s) 307, 704
Bsh1285I CGRYCG 3 cut(s) 714, 755, 797
BshFI GGCC 7 cut(s) 5, 302, 527, 713, 727, 768, 796
BshNI GGYRCC 2 cut(s) 259, 581
BshVI ATCGAT 1 cut(s) 42
BsiEI CGRYCG 3 cut(s) 714, 755, 797
BslFI GGGAC 1 cut(s) 680
BsmFI GGGAC 1 cut(s) 680
BsnI GGCC 7 cut(s) 5, 302, 527, 713, 727, 768, 796
Bsp119I TTCGAA 1 cut(s) 350
Bsp143I GATC 4 cut(s) 436, 604, 683, 808
Bsp19I CCATGG 1 cut(s) 522
BspACI CCGC 5 cut(s) 77, 414, 714, 751, 797
BspANI GGCC 7 cut(s) 5, 302, 527, 713, 727, 768, 796
BspCNI CTCAG 1 cut(s) 493
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 4 cut(s) 222, 261, 583, 741
BspPI GGATC 1 cut(s) 431
BspT104I TTCGAA 1 cut(s) 350
BspT107I GGYRCC 2 cut(s) 259, 581
BsrBI CCGCTC 1 cut(s) 751
BsrFI RCCGGY 4 cut(s) 688, 709, 792, 813
BsrI ACTGG 1 cut(s) 122
BssAI RCCGGY 4 cut(s) 688, 709, 792, 813
BssECI CCNNGG 3 cut(s) 255, 283, 522
BssMI GATC 4 cut(s) 436, 604, 683, 808
BssT1I CCWWGG 2 cut(s) 255, 522
Bst4CI ACNGT 6 cut(s) 22, 133, 183, 191, 387, 395
Bst6I CTCTTC 2 cut(s) 585, 642
BstAPI GCANNNNNTGC 1 cut(s) 266
BstBI TTCGAA 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 480
BstDSI CCRYGG 1 cut(s) 522
BstEII GGTNACC 2 cut(s) 705, 788
BstF5I GGATG 2 cut(s) 160, 580
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 4 cut(s) 439, 607, 686, 811
BstMBI GATC 4 cut(s) 436, 604, 683, 808
BstMCI CGRYCG 3 cut(s) 714, 755, 797
BstMWI GCNNNNNNNGC 3 cut(s) 266, 413, 733
BstNSI RCATGY 1 cut(s) 346
BstPI GGTNACC 2 cut(s) 705, 788
BstSCI CCNGG 1 cut(s) 742
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 307, 704
BstV2I GAAGAC 1 cut(s) 468
BstX2I RGATCY 2 cut(s) 436, 604
BstYI RGATCY 2 cut(s) 436, 604
BstZI CGGCCG 2 cut(s) 711, 794
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 7 cut(s) 5, 302, 527, 713, 727, 768, 796
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 2 cut(s) 160, 580
BtsIMutI CAGTG 3 cut(s) 129, 196, 392
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 4 cut(s) 688, 709, 792, 813
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 41
CviAII CATG 4 cut(s) 160, 343, 523, 613
DdeI CTNAG 1 cut(s) 480
DpnI GATC 4 cut(s) 438, 606, 685, 810
DpnII GATC 4 cut(s) 436, 604, 683, 808
EaeI YGGCCR 7 cut(s) 3, 300, 525, 711, 725, 766, 794
EagI CGGCCG 2 cut(s) 711, 794
Eam1104I CTCTTC 2 cut(s) 585, 642
EarI CTCTTC 2 cut(s) 585, 642
EclXI CGGCCG 2 cut(s) 711, 794
Eco130I CCWWGG 2 cut(s) 255, 522
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 272
Eco52I CGGCCG 2 cut(s) 711, 794
Eco57I CTGAAG 3 cut(s) 50, 93, 453
Eco91I GGTNACC 2 cut(s) 705, 788
EcoO65I GGTNACC 2 cut(s) 705, 788
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 255, 522
ErhI CCWWGG 2 cut(s) 255, 522
FaeI CATG 4 cut(s) 163, 346, 526, 616
FaqI GGGAC 1 cut(s) 680
FatI CATG 4 cut(s) 159, 342, 522, 612
FauI CCCGC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 471
Fnu4HI GCNGC 4 cut(s) 321, 693, 714, 797
FokI GGATG 2 cut(s) 167, 587
Fsp4HI GCNGC 4 cut(s) 321, 693, 714, 797
FspBI CTAG 2 cut(s) 203, 324
GlaI GCGC 1 cut(s) 408
GluI GCNGC 4 cut(s) 321, 693, 714, 797
HaeIII GGCC 7 cut(s) 5, 302, 527, 713, 727, 768, 796
HgaI GACGC 1 cut(s) 41
HhaI GCGC 1 cut(s) 409
Hin1II CATG 4 cut(s) 163, 346, 526, 616
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HincII GTYRAC 2 cut(s) 310, 500
HindII GTYRAC 2 cut(s) 310, 500
HinfI GANTC 6 cut(s) 678, 699, 720, 761, 782, 803
HphI GGTGA 7 cut(s) 97, 458, 678, 699, 758, 782, 803
Hpy166II GTNNAC 4 cut(s) 179, 310, 383, 500
Hpy188I TCNGA 2 cut(s) 683, 808
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 4 cut(s) 179, 310, 383, 500
HpyAV CCTTC 2 cut(s) 119, 589
HpyCH4III ACNGT 6 cut(s) 22, 133, 183, 191, 387, 395
HpyCH4IV ACGT 1 cut(s) 306
HpyCH4V TGCA 1 cut(s) 462
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 413, 733
HpyF3I CTNAG 1 cut(s) 480
HpySE526I ACGT 1 cut(s) 306
Hsp92II CATG 4 cut(s) 163, 346, 526, 616
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 4 cut(s) 436, 604, 683, 808
Lsp1109I GCAGC 2 cut(s) 307, 704
MaeI CTAG 2 cut(s) 203, 324
MaeII ACGT 1 cut(s) 306
MaeIII GTNAC 4 cut(s) 389, 427, 705, 788
MalI GATC 4 cut(s) 438, 606, 685, 810
MbiI CCGCTC 1 cut(s) 751
MboI GATC 4 cut(s) 436, 604, 683, 808
MboII GAAGA 4 cut(s) 446, 468, 602, 659
MflI RGATCY 2 cut(s) 436, 604
MlsI TGGCCA 3 cut(s) 5, 302, 527
MluCI AATT 1 cut(s) 770
MluNI TGGCCA 3 cut(s) 5, 302, 527
MlyI GAGTC 1 cut(s) 687
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 2 cut(s) 293, 596
Mox20I TGGCCA 3 cut(s) 5, 302, 527
MscI TGGCCA 3 cut(s) 5, 302, 527
MseI TTAA 3 cut(s) 209, 372, 570
MslI CAYNNNNRTG 2 cut(s) 423, 515
Msp20I TGGCCA 3 cut(s) 5, 302, 527
MspA1I CMGCKG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 744
MwoI GCNNNNNNNGC 3 cut(s) 266, 413, 733
NciI CCSGG 1 cut(s) 744
NcoI CCATGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 471
NdeII GATC 4 cut(s) 436, 604, 683, 808
NlaIII CATG 4 cut(s) 163, 346, 526, 616
NlaIV GGNNCC 4 cut(s) 222, 261, 583, 741
NmuCI GTSAC 3 cut(s) 427, 705, 788
NspI RCATGY 1 cut(s) 346
NspV TTCGAA 1 cut(s) 350
PciI ACATGT 1 cut(s) 342
PfeI GAWTC 5 cut(s) 699, 720, 761, 782, 803
PkrI GCNGC 4 cut(s) 322, 694, 715, 798
PleI GAGTC 1 cut(s) 686
PpsI GAGTC 1 cut(s) 686
PscI ACATGT 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 372
Psp1406I AACGTT 1 cut(s) 306
PspEI GGTNACC 2 cut(s) 705, 788
PspN4I GGNNCC 4 cut(s) 222, 261, 583, 741
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 2 cut(s) 436, 604
PvuII CAGCTG 1 cut(s) 320
RseI CAYNNNNRTG 2 cut(s) 423, 515
SaqAI TTAA 3 cut(s) 209, 372, 570
SatI GCNGC 4 cut(s) 321, 693, 714, 797
Sau3AI GATC 4 cut(s) 436, 604, 683, 808
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 687
ScrFI CCNGG 1 cut(s) 744
SfcI CTRYAG 1 cut(s) 18
SfuI TTCGAA 1 cut(s) 350
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 423, 515
Sse9I AATT 1 cut(s) 770
SsiI CCGC 5 cut(s) 77, 414, 714, 751, 797
SspI AATATT 1 cut(s) 370
SspMI CTAG 2 cut(s) 203, 324
StyD4I CCNGG 1 cut(s) 742
StyI CCWWGG 2 cut(s) 255, 522
TaaI ACNGT 6 cut(s) 22, 133, 183, 191, 387, 395
TaiI ACGT 1 cut(s) 309
TaqI TCGA 3 cut(s) 42, 350, 588
TasI AATT 1 cut(s) 770
TauI GCSGC 2 cut(s) 716, 799
TfiI GAWTC 5 cut(s) 699, 720, 761, 782, 803
Tru1I TTAA 3 cut(s) 209, 372, 570
Tru9I TTAA 3 cut(s) 209, 372, 570
TscAI CASTG 3 cut(s) 136, 196, 392
TseFI GTSAC 3 cut(s) 427, 705, 788
TseI GCWGC 2 cut(s) 320, 692
Tsp45I GTSAC 3 cut(s) 427, 705, 788
TspDTI ATGAA 1 cut(s) 629
TspRI CASTG 3 cut(s) 136, 196, 392
VpaK11BI GGWCC 1 cut(s) 272
VspI ATTAAT 1 cut(s) 372
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 346
XspI CTAG 2 cut(s) 203, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.