Rw1G029480

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000352
Physical Location & Seq
Forward (+)
57198211 .. 57199603
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029480.1

Sequence Viewer

Length: 642 bp
ATGGCAGCAACGCCCAACTTCAGTACCATTAGTATGAAGCTCCTCATCGATGTAAAGCGTCCAAAGGTTCTCTTTGCCGAAGCGGGGAAGGATTTTGTGGATTTTCTTTTCACTCTTCTTGTTTTGCCTGCGGGGACTGTCACAAGGCTCCTCCCCAAGGATGCCGTTGGTGCCTTTGGCAAACTGTATGAGAGTGTTGAAAATCTTAGTGACACCTACATGCAACCTGATTCAGACAAGGACATCCTGCTGAAACCTAAGACGCCGGTTGCTGGACCTAATGTCCTTGGTTTGCTAAACAACGTTATCAAATCGCCTGCTAGGAATTTCTACACGTGTTCTCAAAATTGTAGTACTGCTAGTAGTGGCTTATTCGGTGCTAGTAGTGGCTACGGTGCTAGCCAGGCTGCTTCTTCCCACCGTTATGTGACCGAAGACCCTAATGAGCTCTGTCCGTCCGGCAAAAGAACCATGTCTTCTGAGGCGACTTATGTTGGTCAACCTAAGGCGATCACTGAAGCAACTTCCGGTGCCGGTGTTGCAGGATATGTCAAAGGCCTTGTTACGTACATGATAATGGATGATTTGGAGGTAAAGCCTATGTCGTCCATTTCAAGCATAACCCTGCTCAACAGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

213

Amino Acids

22.66

Weight (kDa)

7.63

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 9 - 121 1.1e-23 Protein of unknown function (DUF674)
DUF674 PF05056 162 - 212 3.1e-07 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 170, 530
AciI CCGC 2 cut(s) 83, 131
AclI AACGTT 1 cut(s) 303
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 2 cut(s) 4, 537
AcvI CACGTG 1 cut(s) 336
AcyI GRCGYC 1 cut(s) 263
AfaI GTAC 3 cut(s) 25, 355, 569
AfiI CCNNNNNNNGG 3 cut(s) 84, 157, 272
AflIII ACRYGT 2 cut(s) 333, 335
AgsI TTSAA 2 cut(s) 200, 615
AhdI GACNNNNNGTC 1 cut(s) 281
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 2 cut(s) 40, 448
AluI AGCT 2 cut(s) 40, 448
Alw21I GWGCWC 1 cut(s) 450
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 2 cut(s) 5, 407
ApoI RAATTY 1 cut(s) 325
AspS9I GGNCC 1 cut(s) 275
AsuNHI GCTAGC 1 cut(s) 398
AvaII GGWCC 1 cut(s) 275
AxyI CCTNAGG 1 cut(s) 504
BaeI ACNNNNGTAYC 2 cut(s) 7, 40
BanI GGYRCC 2 cut(s) 170, 530
BanII GRGCYC 1 cut(s) 450
BbrPI CACGTG 1 cut(s) 336
BbsI GAAGAC 2 cut(s) 441, 468
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 2 cut(s) 17, 394
BceAI ACGGC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 404
BfaI CTAG 4 cut(s) 321, 360, 381, 399
BisI GCNGC 2 cut(s) 6, 408
BlsI GCNGC 2 cut(s) 7, 409
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 404
Bme18I GGWCC 1 cut(s) 275
BmeRI GACNNNNNGTC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 149, 172, 532
BmrFI CCNGG 1 cut(s) 404
BmsI GCATC 1 cut(s) 151
BmtI GCTAGC 1 cut(s) 402
BpiI GAAGAC 2 cut(s) 441, 468
Bsa29I ATCGAT 1 cut(s) 48
BsaAI YACGTR 2 cut(s) 336, 567
BsaHI GRCGYC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 156, 286
BsaWI WCCGGW 1 cut(s) 527
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 157, 272
Bse118I RCCGGY 2 cut(s) 265, 533
Bse21I CCTNAGG 1 cut(s) 504
BseBI CCWGG 1 cut(s) 404
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 156, 286
BseGI GGATG 3 cut(s) 166, 243, 586
BseLI CCNNNNNNNGG 3 cut(s) 84, 157, 272
BseMII CTCAG 1 cut(s) 471
BseRI GAGGAG 2 cut(s) 32, 140
BseXI GCAGC 2 cut(s) 17, 394
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 2 cut(s) 170, 530
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 4 cut(s) 266, 459, 528, 534
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 3 cut(s) 84, 157, 272
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 558
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 1 cut(s) 510
BspACI CCGC 2 cut(s) 83, 131
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 1 cut(s) 472
BspDI ATCGAT 1 cut(s) 48
BspLI GGNNCC 3 cut(s) 149, 172, 532
BspOI GCTAGC 1 cut(s) 402
BspT107I GGYRCC 2 cut(s) 170, 530
BsrFI RCCGGY 2 cut(s) 265, 533
BssAI RCCGGY 2 cut(s) 265, 533
BssECI CCNNGG 2 cut(s) 156, 286
BssMI GATC 1 cut(s) 510
BssNI GRCGYC 1 cut(s) 263
BssT1I CCWWGG 2 cut(s) 156, 286
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 4 cut(s) 139, 186, 395, 422
Bst6I CTCTTC 1 cut(s) 120
BstACI GRCGYC 1 cut(s) 263
BstBAI YACGTR 2 cut(s) 336, 567
BstC8I GCNNGC 3 cut(s) 129, 318, 400
BstDEI CTNAG 4 cut(s) 206, 258, 480, 504
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 3 cut(s) 166, 243, 586
BstKTI GATC 1 cut(s) 513
BstMBI GATC 1 cut(s) 510
BstMWI GCNNNNNNNGC 3 cut(s) 170, 404, 539
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 402
BstSNI TACGTA 1 cut(s) 567
BstV1I GCAGC 2 cut(s) 17, 394
BstV2I GAAGAC 2 cut(s) 441, 468
Bsu15I ATCGAT 1 cut(s) 48
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 1 cut(s) 558
BsuTUI ATCGAT 1 cut(s) 48
BtsCI GGATG 3 cut(s) 166, 243, 586
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 3 cut(s) 129, 318, 400
Cfr10I RCCGGY 2 cut(s) 265, 533
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 2 cut(s) 47, 271
Csp6I GTAC 3 cut(s) 24, 354, 568
CviAII CATG 3 cut(s) 220, 472, 571
CviJI RGCY 9 cut(s) 40, 148, 369, 390, 402, 407, 448, 558, 598
CviKI_1 RGCY 9 cut(s) 40, 148, 369, 390, 402, 407, 448, 558, 598
CviQI GTAC 3 cut(s) 24, 354, 568
DdeI CTNAG 4 cut(s) 206, 258, 480, 504
DpnI GATC 1 cut(s) 512
DpnII GATC 1 cut(s) 510
DriI GACNNNNNGTC 1 cut(s) 281
Eam1104I CTCTTC 1 cut(s) 120
Eam1105I GACNNNNNGTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 448
Eco105I TACGTA 1 cut(s) 567
Eco130I CCWWGG 2 cut(s) 156, 286
Eco147I AGGCCT 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 450
Eco47I GGWCC 1 cut(s) 275
Eco53kI GAGCTC 1 cut(s) 448
Eco57I CTGAAG 2 cut(s) 4, 537
Eco72I CACGTG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 448
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 2 cut(s) 156, 286
EcoT38I GRGCYC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 156, 286
FaeI CATG 3 cut(s) 223, 475, 574
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FaqI GGGAC 1 cut(s) 148
FatI CATG 3 cut(s) 219, 471, 570
FauI CCCGC 2 cut(s) 76, 124
Fnu4HI GCNGC 2 cut(s) 6, 408
FokI GGATG 3 cut(s) 173, 230, 593
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 2 cut(s) 6, 408
FspBI CTAG 4 cut(s) 321, 360, 381, 399
GluI GCNGC 2 cut(s) 6, 408
HaeIII GGCC 1 cut(s) 558
HapII CCGG 4 cut(s) 266, 459, 528, 534
HgaI GACGC 2 cut(s) 47, 271
Hin1I GRCGYC 1 cut(s) 263
Hin1II CATG 3 cut(s) 223, 475, 574
HincII GTYRAC 1 cut(s) 500
HindII GTYRAC 1 cut(s) 500
HinfI GANTC 1 cut(s) 230
HpaII CCGG 4 cut(s) 266, 459, 528, 534
Hpy166II GTNNAC 1 cut(s) 500
Hpy188I TCNGA 2 cut(s) 235, 481
Hpy8I GTNNAC 1 cut(s) 500
HpyAV CCTTC 1 cut(s) 82
HpyCH4III ACNGT 4 cut(s) 139, 186, 395, 422
HpyCH4IV ACGT 3 cut(s) 303, 335, 566
HpyCH4V TGCA 2 cut(s) 223, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 404, 539
HpyF3I CTNAG 4 cut(s) 206, 258, 480, 504
HpySE526I ACGT 3 cut(s) 303, 335, 566
Hsp92I GRCGYC 1 cut(s) 263
Hsp92II CATG 3 cut(s) 223, 475, 574
Kzo9I GATC 1 cut(s) 510
LmnI GCTCC 2 cut(s) 45, 153
Lsp1109I GCAGC 2 cut(s) 17, 394
LweI GCATC 1 cut(s) 151
MaeI CTAG 4 cut(s) 321, 360, 381, 399
MaeII ACGT 3 cut(s) 303, 335, 566
MaeIII GTNAC 4 cut(s) 139, 209, 427, 562
MalI GATC 1 cut(s) 512
MboI GATC 1 cut(s) 510
MboII GAAGA 4 cut(s) 107, 405, 446, 468
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 2 cut(s) 325, 346
MnlI CCTC 4 cut(s) 53, 161, 475, 583
MslI CAYNNNNRTG 4 cut(s) 32, 218, 423, 575
MspI CCGG 4 cut(s) 266, 459, 528, 534
MspR9I CCNGG 1 cut(s) 404
MvaI CCWGG 1 cut(s) 404
MwoI GCNNNNNNNGC 3 cut(s) 170, 404, 539
NdeII GATC 1 cut(s) 510
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 3 cut(s) 223, 475, 574
NlaIV GGNNCC 3 cut(s) 149, 172, 532
NmuCI GTSAC 3 cut(s) 139, 209, 427
NspI RCATGY 1 cut(s) 223
PceI AGGCCT 1 cut(s) 558
PfeI GAWTC 1 cut(s) 230
PkrI GCNGC 2 cut(s) 7, 409
PmaCI CACGTG 1 cut(s) 336
PmlI CACGTG 1 cut(s) 336
Ppu21I YACGTR 2 cut(s) 336, 567
Psp124BI GAGCTC 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 402
PspCI CACGTG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 3 cut(s) 149, 172, 532
PspPI GGNCC 1 cut(s) 275
RsaI GTAC 3 cut(s) 25, 355, 569
RsaNI GTAC 3 cut(s) 24, 354, 568
RseI CAYNNNNRTG 4 cut(s) 32, 218, 423, 575
SacI GAGCTC 1 cut(s) 450
SatI GCNGC 2 cut(s) 6, 408
Sau3AI GATC 1 cut(s) 510
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 1 cut(s) 404
SduI GDGCHC 1 cut(s) 450
SfaNI GCATC 1 cut(s) 151
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 4 cut(s) 32, 218, 423, 575
SnaBI TACGTA 1 cut(s) 567
Sse9I AATT 2 cut(s) 325, 346
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 2 cut(s) 83, 131
SspMI CTAG 4 cut(s) 321, 360, 381, 399
SstI GAGCTC 1 cut(s) 450
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 402
StyI CCWWGG 2 cut(s) 156, 286
TaaI ACNGT 4 cut(s) 139, 186, 395, 422
TaiI ACGT 3 cut(s) 306, 338, 569
TaqI TCGA 1 cut(s) 48
TaqII GACCGA 1 cut(s) 446
TasI AATT 2 cut(s) 325, 346
TatI WGTACW 1 cut(s) 353
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 1 cut(s) 520
TseFI GTSAC 3 cut(s) 139, 209, 427
TseI GCWGC 2 cut(s) 5, 407
Tsp45I GTSAC 3 cut(s) 139, 209, 427
TspDTI ATGAA 1 cut(s) 50
TspGWI ACGGA 1 cut(s) 444
TspRI CASTG 1 cut(s) 520
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 223
XspI CTAG 4 cut(s) 321, 360, 381, 399
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.