Rmu_sc0006406.1_g000011

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006406.1
OG0000352
Physical Location & Seq
Forward (+)
57024 .. 57673
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006406.1_g000011.1.cds

Sequence Viewer

Length: 369 bp
atggagttgggcgataccgttagtctgaagctcctcatcgatgtgaagcttcaaaaggttctctttgctgaagccggtaaggattttgtggattttcttttcactcttctctctttgcctattggtactgtcattaggcttctctccaagggtgggatgccaactaccacggaagcaacttctggtgccggcgctactggatatgtcaaaggtgttgtgacattcatgataatggatgatctggagatgaagcccatgtccaccatttcaagaatcactatgcttaacagattcaatatcaaggatgttggggcccttgaagagaaggttgttgaacttggcatggatgaggtaaaaatttctatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

122

Amino Acids

13.28

Weight (kDa)

4.92

Isoelectric Point (pI)

14.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 357
AcuI CTGAAG 2 cut(s) 47, 90
AfaI GTAC 1 cut(s) 127
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 5 cut(s) 53, 270, 295, 320, 335
AluBI AGCT 2 cut(s) 31, 49
AluI AGCT 2 cut(s) 31, 49
AoxI GGCC 1 cut(s) 312
ApaI GGGCCC 1 cut(s) 316
ApoI RAATTY 1 cut(s) 357
AspLEI GCGC 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 312, 313
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 185
BanII GRGCYC 1 cut(s) 316
BfoI RGCGCY 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 312, 313
BmiI GGNNCC 3 cut(s) 187, 313, 314
BmsI GCATC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 263
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 147, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse118I RCCGGY 2 cut(s) 74, 188
Bse1I ACTGG 1 cut(s) 202
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 147, 168
BseGI GGATG 4 cut(s) 162, 241, 310, 352
BseLI CCNNNNNNNGG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 316
BshFI GGCC 1 cut(s) 314
BshNI GGYRCC 1 cut(s) 185
BshVI ATCGAT 1 cut(s) 39
BsiSI CCGG 2 cut(s) 75, 189
BslI CCNNNNNNNGG 1 cut(s) 153
BsnI GGCC 1 cut(s) 314
Bsp120I GGGCCC 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 1 cut(s) 314
BspDI ATCGAT 1 cut(s) 39
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 3 cut(s) 187, 313, 314
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 2 cut(s) 74, 188
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 2 cut(s) 74, 188
BssECI CCNNGG 2 cut(s) 147, 168
BssMI GATC 1 cut(s) 238
BssT1I CCWWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 19, 130
Bst6I CTCTTC 2 cut(s) 111, 315
BstC8I GCNNGC 1 cut(s) 190
BstDSI CCRYGG 1 cut(s) 168
BstF5I GGATG 4 cut(s) 162, 241, 310, 352
BstH2I RGCGCY 1 cut(s) 195
BstHHI GCGC 1 cut(s) 194
BstKTI GATC 1 cut(s) 241
BstMBI GATC 1 cut(s) 238
BstSLI GKGCMC 1 cut(s) 316
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 1 cut(s) 314
BsuTUI ATCGAT 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 168
BtsCI GGATG 4 cut(s) 162, 241, 310, 352
Cac8I GCNNGC 1 cut(s) 190
CciI TCATGA 1 cut(s) 225
CfoI GCGC 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 74, 188
Cfr13I GGNCC 2 cut(s) 312, 313
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 126
CviAII CATG 3 cut(s) 226, 256, 343
CviJI RGCY 6 cut(s) 31, 49, 74, 139, 253, 314
CviKI_1 RGCY 6 cut(s) 31, 49, 74, 139, 253, 314
CviQI GTAC 1 cut(s) 126
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
Eam1104I CTCTTC 2 cut(s) 111, 315
EarI CTCTTC 2 cut(s) 111, 315
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 47, 90
EcoO109I RGGNCCY 2 cut(s) 312, 313
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 3 cut(s) 229, 259, 346
FaiI YATR 6 cut(s) 204, 227, 257, 281, 344, 365
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 3 cut(s) 225, 255, 342
FokI GGATG 4 cut(s) 169, 248, 317, 359
FriOI GRGCYC 1 cut(s) 316
GlaI GCGC 1 cut(s) 193
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 195
HaeIII GGCC 1 cut(s) 314
HapII CCGG 2 cut(s) 75, 189
HhaI GCGC 1 cut(s) 194
Hin1II CATG 3 cut(s) 229, 259, 346
Hin6I GCGC 1 cut(s) 192
HinP1I GCGC 1 cut(s) 192
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 273, 291
HpaII CCGG 2 cut(s) 75, 189
Hpy166II GTNNAC 1 cut(s) 261
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 226, 242, 270
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 1 cut(s) 319
HpyCH4III ACNGT 2 cut(s) 19, 130
Hsp92II CATG 3 cut(s) 229, 259, 346
HspAI GCGC 1 cut(s) 192
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 36
LpnPI CCDG 5 cut(s) 88, 168, 183, 202, 227
LweI GCATC 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MboII GAAGA 2 cut(s) 98, 332
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 1 cut(s) 357
MnlI CCTC 2 cut(s) 44, 343
MroNI GCCGGC 1 cut(s) 188
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 41, 230
MspI CCGG 2 cut(s) 75, 189
NaeI GCCGGC 1 cut(s) 190
NdeII GATC 1 cut(s) 238
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 3 cut(s) 229, 259, 346
NlaIV GGNNCC 3 cut(s) 187, 313, 314
NmuCI GTSAC 1 cut(s) 217
PagI TCATGA 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 273, 291
PspN4I GGNNCC 3 cut(s) 187, 313, 314
PspOMI GGGCCC 1 cut(s) 312
PspPI GGNCC 2 cut(s) 312, 313
RsaI GTAC 1 cut(s) 127
RsaNI GTAC 1 cut(s) 126
RseI CAYNNNNRTG 2 cut(s) 41, 230
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 2 cut(s) 312, 313
SduI GDGCHC 1 cut(s) 316
SetI ASST 6 cut(s) 33, 51, 60, 214, 330, 354
SfaNI GCATC 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 41, 230
Sse9I AATT 1 cut(s) 357
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 2 cut(s) 19, 130
TaqI TCGA 1 cut(s) 39
TasI AATT 1 cut(s) 357
TfiI GAWTC 2 cut(s) 273, 291
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TseFI GTSAC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 2 cut(s) 214, 263
TspGWI ACGGA 1 cut(s) 185
XapI RAATTY 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.