Rorug01G0323300

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000352
Physical Location & Seq
Forward (+)
44206775 .. 44210208
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0323300.1

Sequence Viewer

Length: 669 bp
ATGAAGATAGCGATACTTCCAGAAGTAGAGAGAAGCATGTTCTTGACACACTCGATCTTTTTCCTCATTGGAAATCAGCTACCGTGTAGGAGCTATGTGAGAAACCACCAGCTTTCCAGGCTGACTGGTGATGAATGTGCTGCTTTTCGATCAGCAGTGATTTCTCGAATTCCACAGCTGGTTGACTTAGACAGAGAGGGTGCATTCATCTTGGTTATCGACCATTATACCAGCAAAGAAGGTGCTCTCATCATATCTGAACTTGGCTCCTATCCAAGAAGCCTGTTCCTTTTCCTAAAAACTGTGATTAAGGATACTACCAAGTCCATTGCATTGAATATGCTGAAAAATGGGCTTCTCATGGTTATGTCCCTCGGAGTCGAGTGCTGTTTTGAGATCTTGAACAATTTGCAAACAGACCAAGGATTAGGGGAGATTGAAAACATCCCTCAGTTGAAGCTTGATCTGCCAGCTGTGTATCATGAAAAGGCTCAGACCCTCTTGGAGAAACCTCAAAACTCAGAGATGATCCTTCGTGTTAATTTTTGCAACCATTTCGTGGAGGTCTTATTGCTGGAAGGTCATGACCCCGAGTTTTCCAGCCCTTCGCATGGACCAACCAAGACTAACCATTCTGTTTTCTGTACCAATTGCCTCCAATTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

222

Amino Acids

25.09

Weight (kDa)

5.89

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 559
AclWI GGATC 1 cut(s) 523
AcsI RAATTY 1 cut(s) 168
AfaI GTAC 1 cut(s) 646
AfiI CCNNNNNNNGG 2 cut(s) 559, 611
AgsI TTSAA 4 cut(s) 337, 403, 440, 457
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 6 cut(s) 79, 93, 112, 178, 460, 473
AluI AGCT 6 cut(s) 79, 93, 112, 178, 460, 473
Alw21I GWGCWC 1 cut(s) 247
AlwI GGATC 1 cut(s) 523
Ama87I CYCGRG 1 cut(s) 590
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 168
AspS9I GGNCC 1 cut(s) 614
AsuHPI GGTGA 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 590
AvaII GGWCC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 1 cut(s) 127
BcgI CGANNNNNNTGC 2 cut(s) 538, 572
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 307
BfuI GTATCC 1 cut(s) 307
BglII AGATCT 1 cut(s) 396
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 590
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 1 cut(s) 118
BsaJI CCNNGG 2 cut(s) 373, 421
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 611
Bse1I ACTGG 1 cut(s) 130
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 373, 421
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 2 cut(s) 559, 611
BseMI GCAATG 1 cut(s) 327
BseMII CTCAG 3 cut(s) 464, 506, 534
BseNI ACTGG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 247
BsiHKCI CYCGRG 1 cut(s) 590
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 2 cut(s) 559, 611
BsmFI GGGAC 1 cut(s) 355
BsmI GAATGC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 590
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 5 cut(s) 54, 149, 396, 463, 528
BspCNI CTCAG 3 cut(s) 463, 505, 533
BspHI TCATGA 2 cut(s) 481, 583
BspLI GGNNCC 1 cut(s) 268
BspPI GGATC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 2 cut(s) 373, 421
BssMI GATC 5 cut(s) 54, 149, 396, 463, 528
BssT1I CCWWGG 1 cut(s) 421
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 84, 304
BstC8I GCNNGC 1 cut(s) 471
BstDEI CTNAG 4 cut(s) 187, 450, 492, 520
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 5 cut(s) 57, 152, 399, 466, 531
BstMBI GATC 5 cut(s) 54, 149, 396, 463, 528
BstMWI GCNNNNNNNGC 2 cut(s) 118, 466
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuI GTATCC 1 cut(s) 307
BtsCI GGATG 1 cut(s) 444
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 471
CciI TCATGA 2 cut(s) 481, 583
Cfr13I GGNCC 1 cut(s) 614
Csp6I GTAC 1 cut(s) 645
CviAII CATG 5 cut(s) 37, 361, 482, 584, 611
CviQI GTAC 1 cut(s) 645
DdeI CTNAG 4 cut(s) 187, 450, 492, 520
DpnI GATC 5 cut(s) 56, 151, 398, 465, 530
DpnII GATC 5 cut(s) 54, 149, 396, 463, 528
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 614
Eco88I CYCGRG 1 cut(s) 590
EcoRI GAATTC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 5 cut(s) 40, 364, 485, 587, 614
FaqI GGGAC 1 cut(s) 355
FatI CATG 5 cut(s) 36, 360, 481, 583, 610
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
Hin1II CATG 5 cut(s) 40, 364, 485, 587, 614
HincII GTYRAC 1 cut(s) 184
HindII GTYRAC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 1 cut(s) 378
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 4 cut(s) 259, 377, 495, 523
Hpy188III TCNNGA 6 cut(s) 20, 43, 165, 400, 482, 584
Hpy8I GTNNAC 1 cut(s) 184
HpyAV CCTTC 4 cut(s) 233, 542, 572, 615
HpyCH4III ACNGT 2 cut(s) 84, 304
HpyCH4V TGCA 4 cut(s) 203, 332, 412, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 466
HpyF3I CTNAG 4 cut(s) 187, 450, 492, 520
Hsp92II CATG 5 cut(s) 40, 364, 485, 587, 614
Kzo9I GATC 5 cut(s) 54, 149, 396, 463, 528
LmnI GCTCC 2 cut(s) 90, 272
Lsp1109I GCAGC 1 cut(s) 127
MalI GATC 5 cut(s) 56, 151, 398, 465, 530
MboI GATC 5 cut(s) 54, 149, 396, 463, 528
MboII GAAGA 1 cut(s) 16
MfeI CAATTG 2 cut(s) 649, 659
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 5 cut(s) 168, 406, 541, 649, 659
MlyI GAGTC 1 cut(s) 387
MnlI CCTC 8 cut(s) 74, 190, 383, 459, 509, 522, 556, 665
MseI TTAA 2 cut(s) 309, 540
MslI CAYNNNNRTG 1 cut(s) 365
MspA1I CMGCKG 2 cut(s) 178, 473
MspR9I CCNGG 1 cut(s) 118
MunI CAATTG 2 cut(s) 649, 659
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 118, 466
NdeII GATC 5 cut(s) 54, 149, 396, 463, 528
NlaIII CATG 5 cut(s) 40, 364, 485, 587, 614
NlaIV GGNNCC 1 cut(s) 268
NspI RCATGY 1 cut(s) 40
PagI TCATGA 2 cut(s) 481, 583
PctI GAATGC 1 cut(s) 203
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 614
PsuI RGATCY 1 cut(s) 396
PvuII CAGCTG 2 cut(s) 178, 473
RsaI GTAC 1 cut(s) 646
RsaNI GTAC 1 cut(s) 645
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 309, 540
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 5 cut(s) 54, 149, 396, 463, 528
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 1 cut(s) 387
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 247
SinI GGWCC 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 365
Sse9I AATT 5 cut(s) 168, 406, 541, 649, 659
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 2 cut(s) 84, 304
TaqI TCGA 5 cut(s) 53, 148, 166, 219, 381
TasI AATT 5 cut(s) 168, 406, 541, 649, 659
Tru1I TTAA 2 cut(s) 309, 540
Tru9I TTAA 2 cut(s) 309, 540
TscAI CASTG 1 cut(s) 162
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 4 cut(s) 17, 147, 196, 498
TspRI CASTG 1 cut(s) 162
Van91I CCANNNNNTGG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 614
XapI RAATTY 1 cut(s) 168
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.