FvH4_7g21310

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000352
Physical Location & Seq
Forward (+)
17108304 .. 17110246
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g21310.t1

Sequence Viewer

Length: 723 bp
ATGACGACCTCCAACTCCAAAACCATCACCGTAAAGCTCCTCGTCGACAAAAGAAACCAAAATGTTTTGTTCGCCGAAGCCGGCAAAGACTTTGTGGACTTTCTCTTCGCCCTTTTATCTTTCCCCGTCGGCACCGTCGTCCGGCTCCTCTCCAAAAACGGCATGGTCGGAAGCCTAGGCAAGCTCTACGAGAGCTTCGAAAATCTCAACGACATGTATATGCAGCCCAATCTCAAGAGAGACATCCTCCTCAAACCCAAAGAATCGGCCGATGTTCCTAATAACCTAGGTTTGCTGACCAACCTGGAATCTCCAAACACTAGAATCTACTATTGTTCAAGAAGACATGATGTGCCATATGTTTCTCACGACCATAATGCCACATGCCCAAATTGCTACAACAAGTTAGGTTATCAGGCGAGTTATGTGCCTACAGTCTCTACACCGATTACAAAGACCGACGGGTTTGTGAAAGGGGTTGTTACATATATTGTAACAGATGAACTGGAGGTGAAGCCTAATTTTACCATTGCCAGTATTCTTCAGCTGGAGAAGTTTAATGTGAAGTGTATTTGTGACCTTGAAGAGAAGAACGTTGAAGTAAGCATGGATGAGGGTGTGAAATTGCTTAAGGAATCATTGCAATCAAGGTCAGTCCTAACCAATGTATTTCTGAGAGGAATACAGCTTGAAGATGTGAAATCACAAGTTGGCAACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

241

Amino Acids

26.92

Weight (kDa)

6.83

Isoelectric Point (pI)

30.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 6 - 231 3.3e-42 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 45
AclI AACGTT 1 cut(s) 594
AcoI YGGCCR 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 527
AfiI CCNNNNNNNGG 1 cut(s) 141
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 4 cut(s) 339, 584, 599, 692
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 5 cut(s) 37, 184, 195, 547, 688
AluI AGCT 5 cut(s) 37, 184, 195, 547, 688
Alw26I GTCTC 2 cut(s) 234, 442
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspA2I CCTAGG 2 cut(s) 175, 286
AsuHPI GGTGA 2 cut(s) 19, 523
AsuII TTCGAA 1 cut(s) 198
AvrII CCTAGG 2 cut(s) 175, 286
BanI GGYRCC 1 cut(s) 131
BbsI GAAGAC 1 cut(s) 349
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 32
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 4 cut(s) 359, 393, 409, 443
BciT130I CCWGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 234, 442
BfaI CTAG 3 cut(s) 176, 287, 321
BfmI CTRYAG 1 cut(s) 432
BfrI CTTAAG 1 cut(s) 629
BisI GCNGC 1 cut(s) 224
BlnI CCTAGG 2 cut(s) 175, 286
BlsI GCNGC 1 cut(s) 225
Bme1390I CCNGG 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 133, 146
BmrFI CCNGG 1 cut(s) 305
BpiI GAAGAC 1 cut(s) 349
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 2 cut(s) 527, 569
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 175, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 141
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 2 cut(s) 510, 534
Bse3DI GCAATG 2 cut(s) 528, 638
BseBI CCWGG 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 175, 286
BseGI GGATG 2 cut(s) 243, 616
BseLI CCNNNNNNNGG 1 cut(s) 141
BseMI GCAATG 2 cut(s) 528, 638
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 2 cut(s) 510, 534
BseRI GAGGAG 3 cut(s) 29, 137, 239
BseX3I CGGCCG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 81, 142
BslI CCNNNNNNNGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 234, 442
BsnI GGCC 1 cut(s) 269
Bsp119I TTCGAA 1 cut(s) 198
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 666
BspLI GGNNCC 2 cut(s) 133, 146
BspT104I TTCGAA 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 131
BspTI CTTAAG 1 cut(s) 629
BsrDI GCAATG 2 cut(s) 528, 638
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 2 cut(s) 510, 534
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 175, 286
BssT1I CCWWGG 2 cut(s) 175, 286
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 3 cut(s) 31, 136, 436
Bst6I CTCTTC 2 cut(s) 110, 579
BstAFI CTTAAG 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 82, 182
BstDEI CTNAG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 243, 616
BstMAI GTCTC 2 cut(s) 234, 442
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 2 cut(s) 217, 387
BstSCI CCNGG 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 349
BstZI CGGCCG 1 cut(s) 267
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 2 cut(s) 243, 616
Cac8I GCNNGC 2 cut(s) 82, 182
Cfr10I RCCGGY 1 cut(s) 80
CviAII CATG 5 cut(s) 163, 214, 347, 384, 607
DdeI CTNAG 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 267
EagI CGGCCG 1 cut(s) 267
Eam1104I CTCTTC 2 cut(s) 110, 579
EarI CTCTTC 2 cut(s) 110, 579
EclXI CGGCCG 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 175, 286
Eco52I CGGCCG 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 527
EcoRII CCWGG 1 cut(s) 303
EcoT14I CCWWGG 2 cut(s) 175, 286
ErhI CCWWGG 2 cut(s) 175, 286
FaeI CATG 5 cut(s) 166, 217, 350, 387, 610
FatI CATG 5 cut(s) 162, 213, 346, 383, 606
FauNDI CATATG 1 cut(s) 358
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 2 cut(s) 230, 623
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 3 cut(s) 176, 287, 321
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 2 cut(s) 527, 569
HaeIII GGCC 1 cut(s) 269
HapII CCGG 2 cut(s) 81, 142
Hin1II CATG 5 cut(s) 166, 217, 350, 387, 610
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 4 cut(s) 263, 308, 324, 635
HpaII CCGG 2 cut(s) 81, 142
HphI GGTGA 2 cut(s) 19, 523
Hpy166II GTNNAC 2 cut(s) 46, 97
Hpy188I TCNGA 2 cut(s) 170, 675
Hpy188III TCNNGA 3 cut(s) 235, 339, 368
Hpy8I GTNNAC 2 cut(s) 46, 97
Hpy99I CGWCG 4 cut(s) 47, 131, 140, 464
HpyCH4III ACNGT 3 cut(s) 31, 136, 436
HpyCH4IV ACGT 1 cut(s) 594
HpyCH4V TGCA 2 cut(s) 223, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 594
Hsp92II CATG 5 cut(s) 166, 217, 350, 387, 610
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 42, 150
LpnPI CCDG 8 cut(s) 94, 155, 290, 317, 401, 491, 533, 547
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 3 cut(s) 176, 287, 321
MaeII ACGT 1 cut(s) 594
MaeIII GTNAC 3 cut(s) 481, 493, 575
MboII GAAGA 6 cut(s) 97, 354, 533, 596, 601, 704
MluCI AATT 3 cut(s) 391, 520, 623
MmeI TCCRAC 2 cut(s) 36, 148
MnlI CCTC 8 cut(s) 19, 50, 158, 257, 260, 502, 607, 671
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 2 cut(s) 558, 630
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 547
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 2 cut(s) 81, 142
MspR9I CCNGG 1 cut(s) 305
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 1 cut(s) 393
NaeI GCCGGC 1 cut(s) 82
NdeI CATATG 1 cut(s) 358
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 5 cut(s) 166, 217, 350, 387, 610
NlaIV GGNNCC 2 cut(s) 133, 146
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 2 cut(s) 217, 387
NspV TTCGAA 1 cut(s) 198
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 195
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 4 cut(s) 263, 308, 324, 635
PkrI GCNGC 1 cut(s) 225
PscI ACATGT 1 cut(s) 213
Psp1406I AACGTT 1 cut(s) 594
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 133, 146
PvuII CAGCTG 1 cut(s) 547
RseI CAYNNNNRTG 1 cut(s) 218
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 558, 630
SatI GCNGC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 305
SfcI CTRYAG 1 cut(s) 432
SfuI TTCGAA 1 cut(s) 198
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 233, 629
SmoI CTYRAG 2 cut(s) 233, 629
Sse9I AATT 3 cut(s) 391, 520, 623
SspMI CTAG 3 cut(s) 176, 287, 321
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 2 cut(s) 175, 286
TaaI ACNGT 3 cut(s) 31, 136, 436
TaiI ACGT 1 cut(s) 597
TaqI TCGA 2 cut(s) 45, 198
TaqII GACCGA 1 cut(s) 473
TasI AATT 3 cut(s) 391, 520, 623
TfiI GAWTC 4 cut(s) 263, 308, 324, 635
Tru1I TTAA 2 cut(s) 558, 630
Tru9I TTAA 2 cut(s) 558, 630
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 575
TspDTI ATGAA 1 cut(s) 516
Vha464I CTTAAG 1 cut(s) 629
XceI RCATGY 2 cut(s) 217, 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmaJI CCTAGG 2 cut(s) 175, 286
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 3 cut(s) 176, 287, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.