Rw1G029490

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000352
Physical Location & Seq
Forward (+)
57221430 .. 57223676
2247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029490.1

Sequence Viewer

Length: 714 bp
ATGGAAACCCCCAACTCTAAAACCCTCACCGTGAAGCTCCTCGTCGACAAAAGAAGCCAGAAGGTTTTGTTCGCCGAAGCCGGCAAGGACTTCGTGGACTTTCTCTTCGCCCTTCTATCTTTCCCCGTCGGCACTCTGGTCCGGCTTCTCTCCAAAAACGGCATGGTCGGAAGCCTAGGCAAAGTCTACGAGAGCTTCGAAAATCTCAACGACATGTATATGCAGCCGAACCTCAACAGAGAAATCCTCCTCAAACCCAAAGAACCAGCCGGTGTTCCTAATAACCTAGGTTTGTTGACCAACGTGGAATCTCGAACCATCTATCACTGTTCAAGAAGAGGCTATTCTGATAATCACCAATATGTTTCCGACGACCCTAAAGCTACATGCCCGTCGTGCCAGTACAAAATGAGTGCCAAAGCGAGTTATGTGTCTCCACCCGGTATTACAAAGACAGAAGAAGGGTTTGTGAAAGGGGTTGTTACATATATTGTAACTGATGATTTAGAGGTGAAACCTAATGTTACCATTTCCAGTATTCTTCAGCTGGAGAGGTTCAATGTTAAGTGTATTTGTGACCTTGAAGAGAAGGTCGTTAATGTAGGCATGGATGAGGGTGTGAAGTTGCTTAAGGAATCGTTGCAGTCAAAGTCAGTTCTAACCAATGTGTTTCTGAGAGGAATGACTATATCAGATCTAAAACCAGTACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

237

Amino Acids

26.36

Weight (kDa)

8.17

Isoelectric Point (pI)

35.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 6 - 227 1.5e-42 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 45, 186
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 2 cut(s) 404, 708
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 333, 559, 584
AluBI AGCT 4 cut(s) 37, 195, 383, 547
AluI AGCT 4 cut(s) 37, 195, 383, 547
Alw26I GTCTC 1 cut(s) 438
ApeKI GCWGC 1 cut(s) 223
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AspA2I CCTAGG 2 cut(s) 175, 286
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 441
AsuHPI GGTGA 3 cut(s) 19, 347, 523
AsuII TTCGAA 1 cut(s) 198
AvaII GGWCC 1 cut(s) 139
AvrII CCTAGG 2 cut(s) 175, 286
BbvI GCAGC 1 cut(s) 235
BccI CCATC 1 cut(s) 326
BceAI ACGGC 1 cut(s) 175
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BcnI CCSGG 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 438
BfaI CTAG 2 cut(s) 176, 287
BfrI CTTAAG 1 cut(s) 629
BglII AGATCT 1 cut(s) 694
BisI GCNGC 1 cut(s) 224
BlnI CCTAGG 2 cut(s) 175, 286
BlsI GCNGC 1 cut(s) 225
BmcAI AGTACT 1 cut(s) 708
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 441
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 198
BpuMI CCSGG 1 cut(s) 441
BsaJI CCNNGG 2 cut(s) 175, 286
Bse118I RCCGGY 2 cut(s) 80, 269
Bse1I ACTGG 3 cut(s) 400, 534, 704
BseDI CCNNGG 2 cut(s) 175, 286
BseGI GGATG 1 cut(s) 616
BseMII CTCAG 1 cut(s) 665
BseNI ACTGG 3 cut(s) 400, 534, 704
BseRI GAGGAG 2 cut(s) 29, 239
BseXI GCAGC 1 cut(s) 235
BsiSI CCGG 4 cut(s) 81, 142, 270, 441
BsmAI GTCTC 1 cut(s) 438
Bsp119I TTCGAA 1 cut(s) 198
Bsp143I GATC 1 cut(s) 694
BspCNI CTCAG 1 cut(s) 666
BspT104I TTCGAA 1 cut(s) 198
BspTI CTTAAG 1 cut(s) 629
BsrFI RCCGGY 2 cut(s) 80, 269
BsrI ACTGG 3 cut(s) 400, 534, 704
BssAI RCCGGY 2 cut(s) 80, 269
BssECI CCNNGG 2 cut(s) 175, 286
BssMI GATC 1 cut(s) 694
BssT1I CCWWGG 2 cut(s) 175, 286
Bst4CI ACNGT 2 cut(s) 31, 329
Bst6I CTCTTC 3 cut(s) 110, 331, 579
BstAFI CTTAAG 1 cut(s) 629
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 674
BstF5I GGATG 1 cut(s) 616
BstKTI GATC 1 cut(s) 697
BstMAI GTCTC 1 cut(s) 438
BstMBI GATC 1 cut(s) 694
BstMWI GCNNNNNNNGC 1 cut(s) 396
BstNSI RCATGY 2 cut(s) 217, 390
BstSCI CCNGG 1 cut(s) 439
BstV1I GCAGC 1 cut(s) 235
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 82
Cfr10I RCCGGY 2 cut(s) 80, 269
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 2 cut(s) 403, 707
CviAII CATG 4 cut(s) 163, 214, 387, 607
CviQI GTAC 2 cut(s) 403, 707
DdeI CTNAG 1 cut(s) 674
DpnI GATC 1 cut(s) 696
DpnII GATC 1 cut(s) 694
Eam1104I CTCTTC 3 cut(s) 110, 331, 579
EarI CTCTTC 3 cut(s) 110, 331, 579
Eco130I CCWWGG 2 cut(s) 175, 286
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 527
EcoT14I CCWWGG 2 cut(s) 175, 286
ErhI CCWWGG 2 cut(s) 175, 286
FaeI CATG 4 cut(s) 166, 217, 390, 610
FatI CATG 4 cut(s) 162, 213, 386, 606
FblI GTMKAC 2 cut(s) 45, 186
Fnu4HI GCNGC 1 cut(s) 224
FokI GGATG 1 cut(s) 623
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 2 cut(s) 176, 287
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 569
HapII CCGG 4 cut(s) 81, 142, 270, 441
Hin1II CATG 4 cut(s) 166, 217, 390, 610
HincII GTYRAC 2 cut(s) 46, 297
HindII GTYRAC 2 cut(s) 46, 297
HinfI GANTC 2 cut(s) 308, 635
HpaII CCGG 4 cut(s) 81, 142, 270, 441
HphI GGTGA 3 cut(s) 19, 347, 523
Hpy166II GTNNAC 4 cut(s) 46, 97, 187, 297
Hpy188I TCNGA 5 cut(s) 170, 349, 370, 675, 694
Hpy188III TCNNGA 2 cut(s) 312, 333
Hpy8I GTNNAC 4 cut(s) 46, 97, 187, 297
Hpy99I CGWCG 4 cut(s) 47, 131, 374, 397
HpyAV CCTTC 4 cut(s) 55, 122, 455, 583
HpyCH4III ACNGT 2 cut(s) 31, 329
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 223, 643
HpyF10VI GCNNNNNNNGC 1 cut(s) 396
HpyF3I CTNAG 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 303
Hsp92II CATG 4 cut(s) 166, 217, 390, 610
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Kzo9I GATC 1 cut(s) 694
LmnI GCTCC 1 cut(s) 42
Lsp1109I GCAGC 1 cut(s) 235
MaeI CTAG 2 cut(s) 176, 287
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 4 cut(s) 481, 493, 523, 575
MalI GATC 1 cut(s) 696
MboI GATC 1 cut(s) 694
MboII GAAGA 5 cut(s) 97, 348, 470, 533, 596
MflI RGATCY 1 cut(s) 694
MmeI TCCRAC 2 cut(s) 148, 393
MroNI GCCGGC 1 cut(s) 80
MseI TTAA 4 cut(s) 564, 597, 630, 712
MslI CAYNNNNRTG 2 cut(s) 218, 360
MspA1I CMGCKG 1 cut(s) 547
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 4 cut(s) 81, 142, 270, 441
MspR9I CCNGG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 396
NaeI GCCGGC 1 cut(s) 82
NciI CCSGG 1 cut(s) 441
NdeII GATC 1 cut(s) 694
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 4 cut(s) 166, 217, 390, 610
NmuCI GTSAC 1 cut(s) 575
NspI RCATGY 2 cut(s) 217, 390
NspV TTCGAA 1 cut(s) 198
PciI ACATGT 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 82
PfeI GAWTC 2 cut(s) 308, 635
PkrI GCNGC 1 cut(s) 225
PscI ACATGT 1 cut(s) 213
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 694
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 2 cut(s) 404, 708
RsaNI GTAC 2 cut(s) 403, 707
RseI CAYNNNNRTG 2 cut(s) 218, 360
SalI GTCGAC 1 cut(s) 44
SaqAI TTAA 4 cut(s) 564, 597, 630, 712
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 694
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 708
ScrFI CCNGG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 198
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 2 cut(s) 218, 360
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SspMI CTAG 2 cut(s) 176, 287
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 2 cut(s) 175, 286
TaaI ACNGT 2 cut(s) 31, 329
TaiI ACGT 1 cut(s) 306
TaqI TCGA 3 cut(s) 45, 198, 313
TatI WGTACW 2 cut(s) 402, 706
TfiI GAWTC 2 cut(s) 308, 635
Tru1I TTAA 4 cut(s) 564, 597, 630, 712
Tru9I TTAA 4 cut(s) 564, 597, 630, 712
TscAI CASTG 1 cut(s) 332
TseFI GTSAC 1 cut(s) 575
TseI GCWGC 1 cut(s) 223
Tsp45I GTSAC 1 cut(s) 575
TspRI CASTG 1 cut(s) 332
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 139
XceI RCATGY 2 cut(s) 217, 390
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmaJI CCTAGG 2 cut(s) 175, 286
XmiI GTMKAC 2 cut(s) 45, 186
XspI CTAG 2 cut(s) 176, 287
ZrmI AGTACT 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.