Rh1CG310100

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000352
Physical Location & Seq
Forward (+)
58432849 .. 58442472
9624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG310100.1

Sequence Viewer

Length: 627 bp
ATGGCAACCACCACCACCACCAATGTTACTTTGAGGCTCTTGATTGATACAAAGGGCCACAAAGTTCTGTATGCTGAATCAGGCAAGGAATTTGTGGACTTTCTTTTCACCATTATGTCTTTACCCGTCGGCACTGTCATTAGGCTCCTCAGCAAGGATAGCATGGTTGGTAGCTTAGGCAAGCTTTATGATAGTATTGAAAGCATTGGTGACATTTACATGCTACCAGATTGTAACAAAGATACCTTGCTCAAACCCACAGCGGTAATAGGCAGTGGGGATGCCTCTCTTTTGTTAACCAATGATGAGTCAGTGGCGCAAAAAAAGCTTTTCATGTGTGTGAACTACCACCGGTATGTGGCTGATGACCCTAAAGCCATATGTCCACAGTGTAAAAACTATCTCTCCACCAAAGTACCTTATGTTGCTCCACAGGCTACTACTGCTGGATCTTCTGGGGGTGGTCGTGGATATGTGAAAGATGTTGTGACATACATGATTATGGATAATTTGGAGGTGAAGCCTATGTCTACCATATCTTGTATAACTATGCTCAACAAGTTCAATGTTAAGGAGGTTGGTTCCCTTGAAGAGAAGGTGGTTCATCTAGGCATGGATGAGGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

208

Amino Acids

22.71

Weight (kDa)

5.92

Isoelectric Point (pI)

31.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 7 - 208 4.3e-35 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 530
AciI CCGC 1 cut(s) 263
AclWI GGATC 1 cut(s) 457
AcsI RAATTY 1 cut(s) 89
AfaI GTAC 1 cut(s) 417
AfiI CCNNNNNNNGG 2 cut(s) 154, 358
AgeI ACCGGT 1 cut(s) 351
AgsI TTSAA 3 cut(s) 200, 565, 590
AluBI AGCT 3 cut(s) 174, 184, 328
AluI AGCT 3 cut(s) 174, 184, 328
AlwI GGATC 1 cut(s) 457
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 89
AsiGI ACCGGT 1 cut(s) 351
AspLEI GCGC 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 100, 221, 529
BaeI ACNNNNGTAYC 2 cut(s) 399, 432
BbvCI CCTCAGC 1 cut(s) 149
BfaI CTAG 1 cut(s) 608
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 146, 583
BmsI GCATC 1 cut(s) 271
Bpu10I CCTNAGC 2 cut(s) 149, 175
BsaWI WCCGGW 1 cut(s) 351
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 358
Bse118I RCCGGY 1 cut(s) 351
BseGI GGATG 2 cut(s) 286, 622
BseLI CCNNNNNNNGG 2 cut(s) 154, 358
BseMII CTCAG 1 cut(s) 163
BseRI GAGGAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 57
BshTI ACCGGT 1 cut(s) 351
BsiSI CCGG 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 154, 358
BsnI GGCC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 449
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 146, 583
BspPI GGATC 1 cut(s) 457
BsrFI RCCGGY 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 351
BssMI GATC 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 136, 390
Bst6I CTCTTC 1 cut(s) 585
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 149, 175
BstENI CCTNNNNNAGG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 286, 622
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 1 cut(s) 452
BstMBI GATC 1 cut(s) 449
BstMWI GCNNNNNNNGC 4 cut(s) 159, 325, 434, 443
BstNSI RCATGY 1 cut(s) 223
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 1 cut(s) 57
BtsCI GGATG 2 cut(s) 286, 622
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 4 cut(s) 132, 280, 318, 395
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 319
Cfr10I RCCGGY 1 cut(s) 351
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 416
CspAI ACCGGT 1 cut(s) 351
CviAII CATG 5 cut(s) 163, 220, 334, 496, 613
CviQI GTAC 1 cut(s) 416
DdeI CTNAG 2 cut(s) 149, 175
DpnI GATC 1 cut(s) 451
DpnII GATC 1 cut(s) 449
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
EcoNI CCTNNNNNAGG 1 cut(s) 152
FaeI CATG 5 cut(s) 166, 223, 337, 499, 616
FatI CATG 5 cut(s) 162, 219, 333, 495, 612
FauNDI CATATG 1 cut(s) 380
FblI GTMKAC 1 cut(s) 530
FokI GGATG 1 cut(s) 293
FspBI CTAG 1 cut(s) 608
GlaI GCGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 352
HhaI GCGC 1 cut(s) 319
Hin1II CATG 5 cut(s) 166, 223, 337, 499, 616
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HincII GTYRAC 1 cut(s) 297
HindII GTYRAC 1 cut(s) 297
HindIII AAGCTT 2 cut(s) 182, 326
HinfI GANTC 2 cut(s) 77, 308
HpaI GTTAAC 1 cut(s) 297
HpaII CCGG 1 cut(s) 352
HphI GGTGA 3 cut(s) 100, 221, 529
Hpy166II GTNNAC 5 cut(s) 97, 297, 343, 386, 531
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 5 cut(s) 97, 297, 343, 386, 531
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 2 cut(s) 136, 390
HpyF10VI GCNNNNNNNGC 4 cut(s) 159, 325, 434, 443
HpyF3I CTNAG 2 cut(s) 149, 175
Hsp92II CATG 5 cut(s) 166, 223, 337, 499, 616
HspAI GCGC 1 cut(s) 317
KspAI GTTAAC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 449
LmnI GCTCC 2 cut(s) 150, 433
LpnPI CCDG 6 cut(s) 66, 240, 365, 419, 432, 441
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 608
MaeIII GTNAC 4 cut(s) 25, 209, 233, 487
MalI GATC 1 cut(s) 451
MboI GATC 1 cut(s) 449
MboII GAAGA 2 cut(s) 444, 602
MflI RGATCY 1 cut(s) 449
MluCI AATT 2 cut(s) 89, 508
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 6 cut(s) 27, 158, 295, 508, 568, 613
MseI TTAA 2 cut(s) 296, 570
MslI CAYNNNNRTG 5 cut(s) 113, 218, 338, 354, 500
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 352
MwoI GCNNNNNNNGC 4 cut(s) 159, 325, 434, 443
NdeI CATATG 1 cut(s) 380
NdeII GATC 1 cut(s) 449
NlaIII CATG 5 cut(s) 166, 223, 337, 499, 616
NlaIV GGNNCC 2 cut(s) 146, 583
NmuCI GTSAC 2 cut(s) 209, 487
NspI RCATGY 1 cut(s) 223
PfeI GAWTC 1 cut(s) 77
PinAI ACCGGT 1 cut(s) 351
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PspN4I GGNNCC 2 cut(s) 146, 583
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 449
RsaI GTAC 1 cut(s) 417
RsaNI GTAC 1 cut(s) 416
RseI CAYNNNNRTG 5 cut(s) 113, 218, 338, 354, 500
SaqAI TTAA 2 cut(s) 296, 570
Sau3AI GATC 1 cut(s) 449
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 317
SetI ASST 9 cut(s) 176, 186, 248, 330, 421, 519, 579, 600, 624
SfaNI GCATC 1 cut(s) 271
SmiMI CAYNNNNRTG 5 cut(s) 113, 218, 338, 354, 500
Sse9I AATT 2 cut(s) 89, 508
SsiI CCGC 1 cut(s) 263
SspMI CTAG 1 cut(s) 608
TaaI ACNGT 2 cut(s) 136, 390
TasI AATT 2 cut(s) 89, 508
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 2 cut(s) 296, 570
Tru9I TTAA 2 cut(s) 296, 570
TscAI CASTG 4 cut(s) 139, 280, 318, 395
TseFI GTSAC 2 cut(s) 209, 487
Tsp45I GTSAC 2 cut(s) 209, 487
TspDTI ATGAA 2 cut(s) 322, 593
TspRI CASTG 4 cut(s) 139, 280, 318, 395
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 1 cut(s) 89
XceI RCATGY 1 cut(s) 223
XmiI GTMKAC 1 cut(s) 530
XspI CTAG 1 cut(s) 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.