Rh6DG030900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000352
Physical Location & Seq
Forward (+)
3034818 .. 3036029
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG030900.1

Sequence Viewer

Length: 174 bp
ATGAGGACAAAAACAAGGAGATGTCTCTCTTCAAACGGTAGAGAAATGGTTGAAGGCATTAATGGAGTCAAACTCAGTTCTTACCGATCTCTTCCCTGGGAAGAAACCAATTGCTTGAGAAATGGTTGCAACCTGAAGTTGGACCTCAGGTCGGATTCACATTTTGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.49

Weight (kDa)

9.41

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 139, 151
AgsI TTSAA 2 cut(s) 33, 53
AhdI GACNNNNNGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 29
AseI ATTAAT 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
AxyI CCTNAGG 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 142
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 97
BplI GAGNNNNNCTC 2 cut(s) 57, 89
BpuEI CTTGAG 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 95, 96
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 151
Bse21I CCTNAGG 1 cut(s) 146
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 95, 96
BseLI CCNNNNNNNGG 2 cut(s) 139, 151
BseMII CTCAG 2 cut(s) 88, 160
BslI CCNNNNNNNGG 2 cut(s) 139, 151
BsmAI GTCTC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 87, 159
BssECI CCNNGG 2 cut(s) 95, 96
BssMI GATC 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 2 cut(s) 34, 96
BstDEI CTNAG 2 cut(s) 74, 146
BstKTI GATC 1 cut(s) 89
BstMAI GTCTC 1 cut(s) 29
BstMBI GATC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
Bsu36I CCTNAGG 1 cut(s) 146
Cfr13I GGNCC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 74, 146
DpnI GATC 1 cut(s) 88
DpnII GATC 1 cut(s) 86
DriI GACNNNNNGTC 1 cut(s) 148
Eam1104I CTCTTC 2 cut(s) 34, 96
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 2 cut(s) 34, 96
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 95
HinfI GANTC 2 cut(s) 66, 155
Hpy188I TCNGA 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 1 cut(s) 129
HpyF3I CTNAG 2 cut(s) 74, 146
Kzo9I GATC 1 cut(s) 86
LpnPI CCDG 4 cut(s) 82, 109, 133, 146
MalI GATC 1 cut(s) 88
MboI GATC 1 cut(s) 86
MboII GAAGA 3 cut(s) 21, 83, 113
MfeI CAATTG 1 cut(s) 109
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 75
MmeI TCCRAC 2 cut(s) 120, 132
MnlI CCTC 1 cut(s) 155
MseI TTAA 2 cut(s) 60, 172
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 109
MvaI CCWGG 1 cut(s) 97
NdeII GATC 1 cut(s) 86
PasI CCCWGGG 1 cut(s) 96
PfeI GAWTC 1 cut(s) 155
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 60
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 1 cut(s) 142
RseI CAYNNNNRTG 1 cut(s) 165
SaqAI TTAA 2 cut(s) 60, 172
Sau3AI GATC 1 cut(s) 86
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 97
SetI ASST 3 cut(s) 135, 147, 152
SgeI CNNG 6 cut(s) 27, 108, 109, 127, 145, 160
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 109
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 1 cut(s) 38
TasI AATT 1 cut(s) 109
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 60, 172
Tru9I TTAA 2 cut(s) 60, 172
VpaK11BI GGWCC 1 cut(s) 142
VspI ATTAAT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.