Rw1G019070

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000352
Physical Location & Seq
Reverse (-)
41750033 .. 41750907
875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019070.1

Sequence Viewer

Length: 486 bp
ATGGCAACCTCCTCCAGTTCCACTGTTAGCTCCTCATCGATACAAAGAGTGAAAAGGTTCTGTTTGCCGAAGCCGGTAAGGACTTTGTCGATTTTCTTCATCAGGCTTCTCTCTAAGGATGGCATGGTGGGTAGCTTTGGAAAACTGTACCAGAGCGTCGAAAATCTGAATGATACATACATGCAACCCAATCTCAACAAGGACGTCCTTCTGAAACCTAAGGCACCACTTGCTGGATCCAACATCCTTAAGCTGAGCAACACTGAACCAAGTGCTCAGAAACCGATCTACATGTGTGCGAGTGGGAATTACCACAATCTAGCTCTGCTGAACAGGCTAAATGTTAAGGATGTTGGTGCTCTTGAAGAGAAGGTTGTTAATCTTGGCATGCAAGAGGGTGTGAAACTGTTGAAGTCATCTCTTCAGTCCAAGTCAGTTCTGACGAATGTGTTCATTGGGAAGAAAACTGCTGCATCACCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

161

Amino Acids

17.48

Weight (kDa)

9.93

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 34 - 101 1.4e-06 Protein of unknown function (DUF674)
DUF674 PF05056 107 - 155 6e-07 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 207
AccB1I GGYRCC 1 cut(s) 223
AccB7I CCANNNNNTGG 1 cut(s) 233
AclWI GGATC 2 cut(s) 231, 244
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 233
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 2 cut(s) 365, 412
AluBI AGCT 4 cut(s) 30, 135, 253, 323
AluI AGCT 4 cut(s) 30, 135, 253, 323
Alw21I GWGCWC 2 cut(s) 277, 361
AlwI GGATC 2 cut(s) 231, 244
ApeKI GCWGC 1 cut(s) 470
Asp700I GAANNNNTTC 2 cut(s) 56, 449
AsuHPI GGTGA 1 cut(s) 468
AxyI CCTNAGG 1 cut(s) 219
BamHI GGATCC 1 cut(s) 236
BanI GGYRCC 1 cut(s) 223
Bbv12I GWGCWC 2 cut(s) 277, 361
BbvI GCAGC 1 cut(s) 457
BccI CCATC 1 cut(s) 113
BfaI CTAG 1 cut(s) 320
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 471
BlpI GCTNAGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 472
BmiI GGNNCC 2 cut(s) 225, 238
BmsI GCATC 1 cut(s) 482
Bpu1102I GCTNAGC 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 15
Bse21I CCTNAGG 1 cut(s) 219
BseCI ATCGAT 1 cut(s) 38
BseGI GGATG 3 cut(s) 124, 243, 355
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 2 cut(s) 245, 290
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 223
BshVI ATCGAT 1 cut(s) 38
BsiHKAI GWGCWC 2 cut(s) 277, 361
BsiSI CCGG 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 277, 361
Bsp143I GATC 2 cut(s) 236, 285
Bsp1720I GCTNAGC 1 cut(s) 254
BspCNI CTCAG 2 cut(s) 246, 289
BspDI ATCGAT 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 225, 238
BspPI GGATC 2 cut(s) 231, 244
BspT107I GGYRCC 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 248
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 73
BssMI GATC 2 cut(s) 236, 285
BssNI GRCGYC 1 cut(s) 204
Bst4CI ACNGT 3 cut(s) 25, 147, 408
Bst6I CTCTTC 2 cut(s) 360, 426
BstACI GRCGYC 1 cut(s) 204
BstAFI CTTAAG 1 cut(s) 248
BstAPI GCANNNNNTGC 2 cut(s) 230, 479
BstC8I GCNNGC 1 cut(s) 389
BstDEI CTNAG 4 cut(s) 114, 219, 254, 276
BstF5I GGATG 3 cut(s) 124, 243, 355
BstKTI GATC 2 cut(s) 239, 288
BstMBI GATC 2 cut(s) 236, 285
BstMWI GCNNNNNNNGC 3 cut(s) 230, 334, 479
BstNSI RCATGY 3 cut(s) 184, 295, 391
BstV1I GCAGC 1 cut(s) 457
BstX2I RGATCY 1 cut(s) 236
BstYI RGATCY 1 cut(s) 236
Bsu15I ATCGAT 1 cut(s) 38
Bsu36I CCTNAGG 1 cut(s) 219
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 3 cut(s) 124, 243, 355
BtsIMutI CAGTG 2 cut(s) 21, 261
Cac8I GCNNGC 1 cut(s) 389
Cfr10I RCCGGY 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 148
CviAII CATG 5 cut(s) 124, 181, 292, 388, 483
CviJI RGCY 7 cut(s) 30, 73, 106, 135, 253, 323, 337
CviKI_1 RGCY 7 cut(s) 30, 73, 106, 135, 253, 323, 337
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 4 cut(s) 114, 219, 254, 276
DpnI GATC 2 cut(s) 238, 287
DpnII GATC 2 cut(s) 236, 285
Eam1104I CTCTTC 2 cut(s) 360, 426
EarI CTCTTC 2 cut(s) 360, 426
Eco57I CTGAAG 1 cut(s) 407
Eco81I CCTNAGG 1 cut(s) 219
FaeI CATG 5 cut(s) 127, 184, 295, 391, 486
FaiI YATR 6 cut(s) 125, 178, 182, 293, 389, 484
FatI CATG 5 cut(s) 123, 180, 291, 387, 482
Fnu4HI GCNGC 1 cut(s) 471
FokI GGATG 3 cut(s) 131, 230, 362
Fsp4HI GCNGC 1 cut(s) 471
FspBI CTAG 1 cut(s) 320
GluI GCNGC 1 cut(s) 471
HapII CCGG 1 cut(s) 74
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 5 cut(s) 127, 184, 295, 391, 486
HpaII CCGG 1 cut(s) 74
HphI GGTGA 1 cut(s) 468
Hpy188I TCNGA 4 cut(s) 168, 213, 279, 441
Hpy188III TCNNGA 1 cut(s) 362
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 218, 364
HpyCH4III ACNGT 3 cut(s) 25, 147, 408
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 4 cut(s) 184, 391, 473, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 334, 479
HpyF3I CTNAG 4 cut(s) 114, 219, 254, 276
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 5 cut(s) 127, 184, 295, 391, 486
Kzo9I GATC 2 cut(s) 236, 285
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 28, 87, 88, 164, 219, 319
Lsp1109I GCAGC 1 cut(s) 457
LweI GCATC 1 cut(s) 482
MaeI CTAG 1 cut(s) 320
MaeII ACGT 1 cut(s) 204
MalI GATC 2 cut(s) 238, 287
MboI GATC 2 cut(s) 236, 285
MboII GAAGA 4 cut(s) 88, 377, 413, 472
MflI RGATCY 1 cut(s) 236
MhlI GDGCHC 2 cut(s) 277, 361
MluCI AATT 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 4 cut(s) 19, 22, 43, 388
MroXI GAANNNNTTC 2 cut(s) 56, 449
MseI TTAA 3 cut(s) 249, 345, 378
MslI CAYNNNNRTG 1 cut(s) 481
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 74
MwoI GCNNNNNNNGC 3 cut(s) 230, 334, 479
NdeII GATC 2 cut(s) 236, 285
NlaIII CATG 5 cut(s) 127, 184, 295, 391, 486
NlaIV GGNNCC 2 cut(s) 225, 238
NspI RCATGY 3 cut(s) 184, 295, 391
PaeI GCATGC 1 cut(s) 391
PciI ACATGT 1 cut(s) 291
PdmI GAANNNNTTC 2 cut(s) 56, 449
PflFI GACNNNGTC 1 cut(s) 85
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 1 cut(s) 472
PscI ACATGT 1 cut(s) 291
PspN4I GGNNCC 2 cut(s) 225, 238
PsuI RGATCY 1 cut(s) 236
PsyI GACNNNGTC 1 cut(s) 85
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 3 cut(s) 249, 345, 378
SatI GCNGC 1 cut(s) 471
Sau3AI GATC 2 cut(s) 236, 285
SduI GDGCHC 2 cut(s) 277, 361
SfaNI GCATC 1 cut(s) 482
SmiMI CAYNNNNRTG 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SphI GCATGC 1 cut(s) 391
Sse9I AATT 1 cut(s) 307
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 3 cut(s) 25, 147, 408
TaiI ACGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 38, 89, 159
TasI AATT 1 cut(s) 307
Tru1I TTAA 3 cut(s) 249, 345, 378
Tru9I TTAA 3 cut(s) 249, 345, 378
TscAI CASTG 2 cut(s) 28, 268
TseI GCWGC 1 cut(s) 470
TspDTI ATGAA 2 cut(s) 88, 442
TspRI CASTG 2 cut(s) 28, 268
Tth111I GACNNNGTC 1 cut(s) 85
Van91I CCANNNNNTGG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 248
XceI RCATGY 3 cut(s) 184, 295, 391
XmnI GAANNNNTTC 2 cut(s) 56, 449
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.