Rorug01G0322900

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000352
Physical Location & Seq
Forward (+)
44196421 .. 44196729
309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0322900.1

Sequence Viewer

Length: 309 bp
ATGAGCGCGTTGGCAGCTATATTGGGTGTGGAATATGTTAAAGAACATGGACTGTACCTCGGGCTACCCATCCACGTTGGGCACAATAAGAAGGCCATTTTTGATTTCTTAAAAGAACGGCTTACAAAGAAACTTATTAGCTGGAGAACAAAGATTCTAAGTGTTGGTGGCGGGGAATTACTTATCAAGGTAGTTGCTCAAACTCTTCCTAACTATGTCATGAACTGTTATGCCTTACCCAAGTTGCTCTGTGATGACCTACAACAGCTCTACTGTCAGTTCTTTTGGGGAAGTACTGATGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

102

Amino Acids

11.56

Weight (kDa)

8.79

Isoelectric Point (pI)

29.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 8
AciI CCGC 1 cut(s) 171
AfaI GTAC 2 cut(s) 56, 295
AluBI AGCT 3 cut(s) 17, 141, 268
AluI AGCT 3 cut(s) 17, 141, 268
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 8
AvaI CYCGRG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 84
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 77
BceAI ACGGC 1 cut(s) 134
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmcAI AGTACT 1 cut(s) 295
BmeT110I CYCGRG 1 cut(s) 59
BpmI CTGGAG 1 cut(s) 163
BsaJI CCNNGG 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 8
BshFI GGCC 1 cut(s) 95
BsiHKCI CYCGRG 1 cut(s) 59
BsnI GGCC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 84
BspACI CCGC 1 cut(s) 171
BspANI GGCC 1 cut(s) 95
BspFNI CGCG 1 cut(s) 8
BspHI TCATGA 1 cut(s) 219
BssECI CCNNGG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 54, 227, 275
Bst6I CTCTTC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 69
BstFNI CGCG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 69
CciI TCATGA 1 cut(s) 219
CfoI GCGC 1 cut(s) 8
Csp6I GTAC 2 cut(s) 55, 294
CviAII CATG 2 cut(s) 47, 220
CviJI RGCY 6 cut(s) 17, 64, 95, 121, 141, 268
CviKI_1 RGCY 6 cut(s) 17, 64, 95, 121, 141, 268
CviQI GTAC 2 cut(s) 55, 294
DdeI CTNAG 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 59
FaeI CATG 2 cut(s) 50, 223
FaiI YATR 6 cut(s) 20, 36, 48, 216, 221, 231
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 2 cut(s) 46, 219
FauI CCCGC 1 cut(s) 164
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 15
GlaI GCGC 1 cut(s) 7
GluI GCNGC 1 cut(s) 15
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 1 cut(s) 95
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 50, 223
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 220
HpyAV CCTTC 1 cut(s) 85
HpyCH4III ACNGT 3 cut(s) 54, 227, 275
HpyCH4IV ACGT 1 cut(s) 75
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 158
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 50, 223
HspAI GCGC 1 cut(s) 6
LpnPI CCDG 1 cut(s) 127
Lsp1109I GCAGC 1 cut(s) 26
MaeII ACGT 1 cut(s) 75
MboII GAAGA 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 1 cut(s) 176
MnlI CCTC 1 cut(s) 68
MseI TTAA 2 cut(s) 39, 110
MvnI CGCG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 14
NlaIII CATG 2 cut(s) 50, 223
PagI TCATGA 1 cut(s) 219
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 16
RsaI GTAC 2 cut(s) 56, 295
RsaNI GTAC 2 cut(s) 55, 294
SaqAI TTAA 2 cut(s) 39, 110
SatI GCNGC 1 cut(s) 15
ScaI AGTACT 1 cut(s) 295
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 19, 60, 78, 143, 192, 261, 270
Sse9I AATT 1 cut(s) 176
SsiI CCGC 1 cut(s) 171
TaaI ACNGT 3 cut(s) 54, 227, 275
TaiI ACGT 1 cut(s) 78
TasI AATT 1 cut(s) 176
TatI WGTACW 1 cut(s) 293
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 2 cut(s) 39, 110
Tru9I TTAA 2 cut(s) 39, 110
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 236
ZrmI AGTACT 1 cut(s) 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.