Rmu_sc0004288.1_g000007

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004288.1
OG0000352
Physical Location & Seq
Reverse (-)
26775 .. 28004
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004288.1_g000007.1.cds

Sequence Viewer

Length: 450 bp
atgtccatcgtgttcacaagccatgaacctctgactacttatgtcaatcagccaactaccacggaagcaacttctggtgtcggcgctgctggatatgttaaaggcgttgtgaaatacatgataatggatgatctggagatgaagcccatgtccaccatttcaagcatcactatgcttaacagattcaatatcaaggatgttggggccctagaagagaaggttgttgaacttggcatggatgaggtaaaaatttctatactagagcaattgatctccgcgctgcccttgagactcgatctcgacctcaacgacgactcctctgcaccgttgctgcacccagatcagattcgtcagccacccactgtcgcagcacccagattagcgacgatgttgcagcccacccgccacctctcagcccccggccctcggtgcctagcgtgctctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

149

Amino Acids

16.16

Weight (kDa)

5.07

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 429
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 276, 403
AcsI RAATTY 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 426
AgsI TTSAA 3 cut(s) 162, 187, 227
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 283
AoxI GGCC 2 cut(s) 204, 421
ApaI GGGCCC 1 cut(s) 208
ApeKI GCWGC 5 cut(s) 86, 280, 331, 368, 394
ApoI RAATTY 1 cut(s) 249
AspLEI GCGC 2 cut(s) 86, 280
AspS9I GGNCC 3 cut(s) 204, 205, 422
AsuC2I CCSGG 1 cut(s) 420
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 429
BanII GRGCYC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 5 cut(s) 73, 267, 318, 380, 406
BccI CCATC 1 cut(s) 14
BcgI CGANNNNNNTGC 4 cut(s) 302, 336, 373, 407
BcnI CCSGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 283
BfaI CTAG 4 cut(s) 209, 260, 434, 448
BfoI RGCGCY 1 cut(s) 87
BisI GCNGC 5 cut(s) 87, 281, 332, 369, 395
BlsI GCNGC 5 cut(s) 88, 282, 333, 370, 396
Bme1390I CCNGG 1 cut(s) 420
BmgT120I GGNCC 3 cut(s) 204, 205, 422
BmiI GGNNCC 3 cut(s) 205, 206, 431
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 155
BpuEI CTTGAG 1 cut(s) 307
BpuMI CCSGG 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 60, 418, 425
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 426
BseDI CCNNGG 3 cut(s) 60, 418, 425
BseGI GGATG 3 cut(s) 133, 202, 244
BseLI CCNNNNNNNGG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 426
BseRI GAGGAG 1 cut(s) 307
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 5 cut(s) 73, 267, 318, 380, 406
BsgI GTGCAG 2 cut(s) 306, 317
Bsh1236I CGCG 1 cut(s) 278
BshFI GGCC 2 cut(s) 206, 423
BshNI GGYRCC 1 cut(s) 429
BsiHKAI GWGCWC 1 cut(s) 443
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 1 cut(s) 426
BsmAI GTCTC 1 cut(s) 283
BsnI GGCC 2 cut(s) 206, 423
Bsp120I GGGCCC 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 208, 443
Bsp143I GATC 4 cut(s) 130, 270, 295, 340
BspACI CCGC 2 cut(s) 276, 403
BspANI GGCC 2 cut(s) 206, 423
BspCNI CTCAG 1 cut(s) 425
BspFNI CGCG 1 cut(s) 278
BspLI GGNNCC 3 cut(s) 205, 206, 431
BspT107I GGYRCC 1 cut(s) 429
BssECI CCNNGG 3 cut(s) 60, 418, 425
BssMI GATC 4 cut(s) 130, 270, 295, 340
Bst4CI ACNGT 2 cut(s) 327, 364
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 439
BstDEI CTNAG 1 cut(s) 412
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 3 cut(s) 133, 202, 244
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 87
BstHHI GCGC 2 cut(s) 86, 280
BstKTI GATC 4 cut(s) 133, 273, 298, 343
BstMAI GTCTC 1 cut(s) 283
BstMBI GATC 4 cut(s) 130, 270, 295, 340
BstMWI GCNNNNNNNGC 3 cut(s) 429, 438, 443
BstSCI CCNGG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 5 cut(s) 73, 267, 318, 380, 406
BsuRI GGCC 2 cut(s) 206, 423
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 3 cut(s) 133, 202, 244
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 1 cut(s) 439
CfoI GCGC 2 cut(s) 86, 280
Cfr13I GGNCC 3 cut(s) 204, 205, 422
CviAII CATG 4 cut(s) 23, 118, 148, 235
CviJI RGCY 8 cut(s) 21, 52, 145, 206, 355, 397, 416, 423
CviKI_1 RGCY 8 cut(s) 21, 52, 145, 206, 355, 397, 416, 423
DdeI CTNAG 1 cut(s) 412
DpnI GATC 4 cut(s) 132, 272, 297, 342
DpnII GATC 4 cut(s) 130, 270, 295, 340
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco24I GRGCYC 1 cut(s) 208
EcoO109I RGGNCCY 2 cut(s) 204, 205
EcoT38I GRGCYC 1 cut(s) 208
FaeI CATG 4 cut(s) 26, 121, 151, 238
FaiI YATR 8 cut(s) 24, 42, 96, 119, 149, 173, 236, 257
FatI CATG 4 cut(s) 22, 117, 147, 234
FauI CCCGC 1 cut(s) 410
Fnu4HI GCNGC 5 cut(s) 87, 281, 332, 369, 395
FokI GGATG 3 cut(s) 140, 209, 251
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 5 cut(s) 87, 281, 332, 369, 395
FspBI CTAG 4 cut(s) 209, 260, 434, 448
GlaI GCGC 2 cut(s) 85, 279
GluI GCNGC 5 cut(s) 87, 281, 332, 369, 395
GsuI CTGGAG 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 87
HaeIII GGCC 2 cut(s) 206, 423
HapII CCGG 1 cut(s) 420
HhaI GCGC 2 cut(s) 86, 280
Hin1II CATG 4 cut(s) 26, 121, 151, 238
Hin6I GCGC 2 cut(s) 84, 278
HinP1I GCGC 2 cut(s) 84, 278
HinfI GANTC 4 cut(s) 183, 291, 314, 346
HpaII CCGG 1 cut(s) 420
Hpy166II GTNNAC 2 cut(s) 15, 153
Hpy188I TCNGA 2 cut(s) 33, 345
Hpy188III TCNNGA 2 cut(s) 134, 299
Hpy8I GTNNAC 2 cut(s) 15, 153
Hpy99I CGWCG 2 cut(s) 314, 388
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 327, 364
HpyCH4V TGCA 3 cut(s) 323, 334, 394
HpyF10VI GCNNNNNNNGC 3 cut(s) 429, 438, 443
HpyF3I CTNAG 1 cut(s) 412
Hsp92II CATG 4 cut(s) 26, 121, 151, 238
HspAI GCGC 2 cut(s) 84, 278
Kzo9I GATC 4 cut(s) 130, 270, 295, 340
LpnPI CCDG 6 cut(s) 60, 75, 119, 351, 388, 433
Lsp1109I GCAGC 5 cut(s) 73, 267, 318, 380, 406
LweI GCATC 1 cut(s) 174
MaeI CTAG 4 cut(s) 209, 260, 434, 448
MalI GATC 4 cut(s) 132, 272, 297, 342
MboI GATC 4 cut(s) 130, 270, 295, 340
MboII GAAGA 1 cut(s) 224
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 208, 443
MluCI AATT 2 cut(s) 249, 266
MlyI GAGTC 2 cut(s) 285, 308
MnlI CCTC 6 cut(s) 39, 235, 314, 328, 419, 435
MseI TTAA 2 cut(s) 99, 177
MslI CAYNNNNRTG 2 cut(s) 122, 170
MspI CCGG 1 cut(s) 420
MspR9I CCNGG 1 cut(s) 420
MunI CAATTG 1 cut(s) 266
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 3 cut(s) 429, 438, 443
NciI CCSGG 1 cut(s) 420
NdeII GATC 4 cut(s) 130, 270, 295, 340
NlaIII CATG 4 cut(s) 26, 121, 151, 238
NlaIV GGNNCC 3 cut(s) 205, 206, 431
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 2 cut(s) 183, 346
PkrI GCNGC 5 cut(s) 88, 282, 333, 370, 396
PleI GAGTC 2 cut(s) 285, 308
PpsI GAGTC 2 cut(s) 285, 308
PspN4I GGNNCC 3 cut(s) 205, 206, 431
PspOMI GGGCCC 1 cut(s) 204
PspPI GGNCC 3 cut(s) 204, 205, 422
RseI CAYNNNNRTG 2 cut(s) 122, 170
SaqAI TTAA 2 cut(s) 99, 177
SatI GCNGC 5 cut(s) 87, 281, 332, 369, 395
Sau3AI GATC 4 cut(s) 130, 270, 295, 340
Sau96I GGNCC 3 cut(s) 204, 205, 422
SchI GAGTC 2 cut(s) 285, 308
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 208, 443
SetI ASST 5 cut(s) 31, 222, 246, 306, 411
SfaNI GCATC 1 cut(s) 174
SmiMI CAYNNNNRTG 2 cut(s) 122, 170
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 2 cut(s) 249, 266
SsiI CCGC 2 cut(s) 276, 403
SspMI CTAG 4 cut(s) 209, 260, 434, 448
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 2 cut(s) 327, 364
TaqI TCGA 2 cut(s) 294, 300
TasI AATT 2 cut(s) 249, 266
TfiI GAWTC 2 cut(s) 183, 346
Tru1I TTAA 2 cut(s) 99, 177
Tru9I TTAA 2 cut(s) 99, 177
TscAI CASTG 1 cut(s) 367
TseI GCWGC 5 cut(s) 86, 280, 331, 368, 394
TspDTI ATGAA 2 cut(s) 39, 155
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 367
XapI RAATTY 1 cut(s) 249
XspI CTAG 4 cut(s) 209, 260, 434, 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.