Rmu_sc0002476.1_g000021

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002476.1
OG0000352
Physical Location & Seq
Forward (+)
80516 .. 81581
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002476.1_g000021.1.cds

Sequence Viewer

Length: 924 bp
atgtcccaaaaaactccacccccgaaggttagtttgaaactcctaatcgacaaagagtatcataaggttgtgtttgctgaagctggcaaagagttcgtggatttcctcttcactcttctgtctctgcctcttttaaacacggccagagtttgtaaggttggaagtttaagcaatatctatgggagcattgacgccctcggtgacaagtacatgctccccaatgtcaacaagaacactatgctgagatccaaggaacatgctgctgtatttagcaaacttcagcttgtgttgagaaacgaaccggaccttaaaccaattatgccgtcgaatgtgaagaagttttatatgtgtgagaatttcaagttgaagcaacacggctcatgggtgacagatgactctaaagccatttgtccaatgtgcagtacaactatgtcgaccggtgtcggctatgttgctcctccgggagaacctactttgatgaccagggacgaagggtatgtgagaggtgttgcttcatacatgataatggacgatctgagagtcaaacctttgtctttcttttcaaatttgaatttgcttaagaagtgcatcaatggcagtagtggtttcaataacctggaagagaaggtggttcatgttgaaatggatcaggtagaaatggttgaaggcattaatggagtcaaactcagttctcaccgatctcttccttgggaagaaaccaattgcttgagaaatggttgcaacctgaagttggacctcaggtcggattcacattttgagtcgttggaggccgccggagcggtgaagggtgggggctcctttcctgaaggatccgacccggccaatttgggtggtggggatgtagggtttgggcaatgggctttgggcccttgcttttctgggctgcggaatgtagtccgatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

307

Amino Acids

33.75

Weight (kDa)

8.05

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 800
AccI GTMKAC 1 cut(s) 434
AciI CCGC 3 cut(s) 792, 800, 907
AclWI GGATC 4 cut(s) 240, 654, 825, 838
AcoI YGGCCR 2 cut(s) 141, 840
AcsI RAATTY 3 cut(s) 355, 565, 571
AcuI CTGAAG 4 cut(s) 99, 263, 767, 846
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 2 cut(s) 209, 424
AfiI CCNNNNNNNGG 2 cut(s) 751, 763
AflII CTTAAG 1 cut(s) 578
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 8 cut(s) 37, 361, 367, 564, 571, 610, 641, 665
AhdI GACNNNNNGTC 1 cut(s) 760
AjnI CCWGG 2 cut(s) 482, 615
AluBI AGCT 2 cut(s) 83, 283
AluI AGCT 2 cut(s) 83, 283
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 4 cut(s) 240, 654, 825, 838
AoxI GGCC 4 cut(s) 141, 789, 840, 886
ApaI GGGCCC 1 cut(s) 890
ApeKI GCWGC 2 cut(s) 260, 904
ApoI RAATTY 3 cut(s) 355, 565, 571
AseI ATTAAT 1 cut(s) 672
AsiGI ACCGGT 1 cut(s) 437
AspS9I GGNCC 4 cut(s) 304, 754, 886, 887
AsuC2I CCSGG 2 cut(s) 462, 839
AsuHPI GGTGA 4 cut(s) 212, 397, 686, 814
AvaII GGWCC 2 cut(s) 304, 754
AxyI CCTNAGG 1 cut(s) 758
BaeGI GKGCMC 1 cut(s) 890
BamHI GGATCC 1 cut(s) 830
BanII GRGCYC 2 cut(s) 818, 890
BbvI GCAGC 2 cut(s) 247, 891
BceAI ACGGC 3 cut(s) 156, 307, 391
BcgI CGANNNNNNTGC 2 cut(s) 76, 110
BciT130I CCWGG 2 cut(s) 484, 617
BcnI CCSGG 2 cut(s) 462, 839
BcoDI GTCTC 1 cut(s) 126
BfrI CTTAAG 1 cut(s) 578
BisI GCNGC 3 cut(s) 261, 792, 905
BlsI GCNGC 3 cut(s) 262, 793, 906
Bme1390I CCNGG 4 cut(s) 462, 484, 617, 839
Bme18I GGWCC 2 cut(s) 304, 754
BmeRI GACNNNNNGTC 1 cut(s) 760
BmgT120I GGNCC 4 cut(s) 304, 754, 886, 887
BmiI GGNNCC 3 cut(s) 817, 832, 888
BmrFI CCNGG 4 cut(s) 462, 484, 617, 839
BmsI GCATC 1 cut(s) 597
BoxI GACNNNNGTC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 669, 701
BpuEI CTTGAG 1 cut(s) 748
BpuMI CCSGG 2 cut(s) 462, 839
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 4 cut(s) 196, 249, 483, 707
BsaWI WCCGGW 2 cut(s) 301, 437
Bsc4I CCNNNNNNNGG 2 cut(s) 751, 763
Bse118I RCCGGY 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 758
Bse3DI GCAATG 1 cut(s) 881
BseBI CCWGG 2 cut(s) 484, 617
BseDI CCNNGG 4 cut(s) 196, 249, 483, 707
BseGI GGATG 1 cut(s) 865
BseLI CCNNNNNNNGG 2 cut(s) 751, 763
BseMI GCAATG 1 cut(s) 881
BseMII CTCAG 4 cut(s) 233, 527, 700, 772
BseRI GAGGAG 1 cut(s) 447
BseSI GKGCMC 1 cut(s) 890
BseXI GCAGC 2 cut(s) 247, 891
BsgI GTGCAG 1 cut(s) 439
Bsh1285I CGRYCG 1 cut(s) 438
BshFI GGCC 4 cut(s) 143, 791, 842, 888
BshTI ACCGGT 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 438
BsiSI CCGG 5 cut(s) 302, 438, 461, 795, 839
BslFI GGGAC 1 cut(s) 500
BslI CCNNNNNNNGG 2 cut(s) 751, 763
BsmAI GTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 4 cut(s) 143, 791, 842, 888
Bsp120I GGGCCC 1 cut(s) 886
Bsp1286I GDGCHC 2 cut(s) 818, 890
Bsp143I GATC 5 cut(s) 245, 532, 646, 698, 830
BspACI CCGC 3 cut(s) 792, 800, 907
BspANI GGCC 4 cut(s) 143, 791, 842, 888
BspCNI CTCAG 4 cut(s) 234, 528, 699, 771
BspLI GGNNCC 3 cut(s) 817, 832, 888
BspPI GGATC 4 cut(s) 240, 654, 825, 838
BspTI CTTAAG 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 800
BsrDI GCAATG 1 cut(s) 881
BsrFI RCCGGY 1 cut(s) 437
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 4 cut(s) 196, 249, 483, 707
BssMI GATC 5 cut(s) 245, 532, 646, 698, 830
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 2 cut(s) 249, 707
Bst2UI CCWGG 2 cut(s) 484, 617
Bst6I CTCTTC 4 cut(s) 113, 120, 615, 708
BstACI GRCGYC 1 cut(s) 192
BstAFI CTTAAG 1 cut(s) 578
BstC8I GCNNGC 1 cut(s) 85
BstDEI CTNAG 4 cut(s) 242, 536, 686, 758
BstF5I GGATG 1 cut(s) 865
BstKTI GATC 5 cut(s) 248, 535, 649, 701, 833
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 5 cut(s) 245, 532, 646, 698, 830
BstMCI CGRYCG 1 cut(s) 438
BstMWI GCNNNNNNNGC 2 cut(s) 594, 797
BstNI CCWGG 2 cut(s) 484, 617
BstNSI RCATGY 2 cut(s) 214, 260
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 4 cut(s) 460, 482, 615, 837
BstSLI GKGCMC 1 cut(s) 890
BstV1I GCAGC 2 cut(s) 247, 891
BstX2I RGATCY 2 cut(s) 245, 830
BstYI RGATCY 2 cut(s) 245, 830
Bsu36I CCTNAGG 1 cut(s) 758
BsuRI GGCC 4 cut(s) 143, 791, 842, 888
BtsCI GGATG 1 cut(s) 865
Cac8I GCNNGC 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 4 cut(s) 304, 754, 886, 887
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 208, 423
CspAI ACCGGT 1 cut(s) 437
CspCI CAANNNNNGTGG 2 cut(s) 832, 867
CviAII CATG 5 cut(s) 211, 257, 381, 520, 635
CviQI GTAC 2 cut(s) 208, 423
DdeI CTNAG 4 cut(s) 242, 536, 686, 758
DpnI GATC 5 cut(s) 247, 534, 648, 700, 832
DpnII GATC 5 cut(s) 245, 532, 646, 698, 830
DraI TTTAAA 1 cut(s) 135
DriI GACNNNNNGTC 1 cut(s) 760
EaeI YGGCCR 2 cut(s) 141, 840
Eam1104I CTCTTC 4 cut(s) 113, 120, 615, 708
Eam1105I GACNNNNNGTC 1 cut(s) 760
EarI CTCTTC 4 cut(s) 113, 120, 615, 708
Eco130I CCWWGG 2 cut(s) 249, 707
Eco24I GRGCYC 2 cut(s) 818, 890
Eco47I GGWCC 2 cut(s) 304, 754
Eco57I CTGAAG 4 cut(s) 99, 263, 767, 846
Eco81I CCTNAGG 1 cut(s) 758
EcoO109I RGGNCCY 1 cut(s) 887
EcoRII CCWGG 2 cut(s) 482, 615
EcoT14I CCWWGG 2 cut(s) 249, 707
EcoT38I GRGCYC 2 cut(s) 818, 890
ErhI CCWWGG 2 cut(s) 249, 707
FaeI CATG 5 cut(s) 214, 260, 384, 523, 638
FaqI GGGAC 1 cut(s) 500
FatI CATG 5 cut(s) 210, 256, 380, 519, 634
FblI GTMKAC 1 cut(s) 434
Fnu4HI GCNGC 3 cut(s) 261, 792, 905
FokI GGATG 1 cut(s) 872
FriOI GRGCYC 2 cut(s) 818, 890
Fsp4HI GCNGC 3 cut(s) 261, 792, 905
GluI GCNGC 3 cut(s) 261, 792, 905
HaeIII GGCC 4 cut(s) 143, 791, 842, 888
HapII CCGG 5 cut(s) 302, 438, 461, 795, 839
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 5 cut(s) 214, 260, 384, 523, 638
HincII GTYRAC 2 cut(s) 226, 435
HindII GTYRAC 2 cut(s) 226, 435
HinfI GANTC 5 cut(s) 395, 540, 678, 767, 779
HpaII CCGG 5 cut(s) 302, 438, 461, 795, 839
HphI GGTGA 4 cut(s) 212, 397, 686, 814
Hpy166II GTNNAC 2 cut(s) 226, 435
Hpy188I TCNGA 4 cut(s) 537, 766, 835, 920
Hpy188III TCNNGA 1 cut(s) 824
Hpy8I GTNNAC 2 cut(s) 226, 435
Hpy99I CGWCG 1 cut(s) 328
HpyAV CCTTC 6 cut(s) 19, 485, 619, 659, 799, 821
HpyCH4V TGCA 3 cut(s) 420, 588, 741
HpyF10VI GCNNNNNNNGC 2 cut(s) 594, 797
HpyF3I CTNAG 4 cut(s) 242, 536, 686, 758
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 5 cut(s) 214, 260, 384, 523, 638
Kzo9I GATC 5 cut(s) 245, 532, 646, 698, 830
LmnI GCTCC 5 cut(s) 183, 219, 460, 797, 821
Lsp1109I GCAGC 2 cut(s) 247, 891
LweI GCATC 1 cut(s) 597
MaeIII GTNAC 2 cut(s) 200, 385
MalI GATC 5 cut(s) 247, 534, 648, 700, 832
MbiI CCGCTC 1 cut(s) 800
MboI GATC 5 cut(s) 245, 532, 646, 698, 830
MboII GAAGA 6 cut(s) 100, 107, 346, 632, 695, 725
MfeI CAATTG 1 cut(s) 721
MflI RGATCY 2 cut(s) 245, 830
MhlI GDGCHC 2 cut(s) 818, 890
MluCI AATT 6 cut(s) 315, 355, 565, 571, 721, 844
MlyI GAGTC 4 cut(s) 389, 549, 687, 788
MmeI TCCRAC 5 cut(s) 139, 732, 744, 765, 858
MnlI CCTC 7 cut(s) 116, 138, 206, 468, 497, 767, 781
MseI TTAA 5 cut(s) 134, 167, 309, 579, 672
MslI CAYNNNNRTG 1 cut(s) 524
MspCI CTTAAG 1 cut(s) 578
MspI CCGG 5 cut(s) 302, 438, 461, 795, 839
MspR9I CCNGG 4 cut(s) 462, 484, 617, 839
MunI CAATTG 1 cut(s) 721
MvaI CCWGG 2 cut(s) 484, 617
MwoI GCNNNNNNNGC 2 cut(s) 594, 797
NciI CCSGG 2 cut(s) 462, 839
NdeII GATC 5 cut(s) 245, 532, 646, 698, 830
NlaIII CATG 5 cut(s) 214, 260, 384, 523, 638
NlaIV GGNNCC 3 cut(s) 817, 832, 888
NmuCI GTSAC 2 cut(s) 200, 385
NspI RCATGY 2 cut(s) 214, 260
PfeI GAWTC 1 cut(s) 767
PfoI TCCNGGA 1 cut(s) 460
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 3 cut(s) 262, 793, 906
PleI GAGTC 4 cut(s) 389, 548, 686, 787
PpsI GAGTC 4 cut(s) 389, 548, 686, 787
PshAI GACNNNNGTC 1 cut(s) 440
PshBI ATTAAT 1 cut(s) 672
Psp6I CCWGG 2 cut(s) 482, 615
PspGI CCWGG 2 cut(s) 482, 615
PspN4I GGNNCC 3 cut(s) 817, 832, 888
PspOMI GGGCCC 1 cut(s) 886
PspPI GGNCC 4 cut(s) 304, 754, 886, 887
PsuI RGATCY 2 cut(s) 245, 830
RsaI GTAC 2 cut(s) 209, 424
RsaNI GTAC 2 cut(s) 208, 423
RseI CAYNNNNRTG 1 cut(s) 524
SalI GTCGAC 1 cut(s) 433
SaqAI TTAA 5 cut(s) 134, 167, 309, 579, 672
SatI GCNGC 3 cut(s) 261, 792, 905
Sau3AI GATC 5 cut(s) 245, 532, 646, 698, 830
Sau96I GGNCC 4 cut(s) 304, 754, 886, 887
SchI GAGTC 4 cut(s) 389, 549, 687, 788
ScrFI CCNGG 4 cut(s) 462, 484, 617, 839
SduI GDGCHC 2 cut(s) 818, 890
SfaNI GCATC 1 cut(s) 597
SinI GGWCC 2 cut(s) 304, 754
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 578, 727
SmoI CTYRAG 2 cut(s) 578, 727
Sse9I AATT 6 cut(s) 315, 355, 565, 571, 721, 844
SsiI CCGC 3 cut(s) 792, 800, 907
StyD4I CCNGG 4 cut(s) 460, 482, 615, 837
StyI CCWWGG 2 cut(s) 249, 707
TaqI TCGA 3 cut(s) 48, 326, 434
TasI AATT 6 cut(s) 315, 355, 565, 571, 721, 844
TatI WGTACW 2 cut(s) 207, 422
TauI GCSGC 1 cut(s) 794
TfiI GAWTC 1 cut(s) 767
Tru1I TTAA 5 cut(s) 134, 167, 309, 579, 672
Tru9I TTAA 5 cut(s) 134, 167, 309, 579, 672
TseFI GTSAC 2 cut(s) 200, 385
TseI GCWGC 2 cut(s) 260, 904
Tsp45I GTSAC 2 cut(s) 200, 385
TspDTI ATGAA 2 cut(s) 504, 623
Vha464I CTTAAG 1 cut(s) 578
VpaK11BI GGWCC 2 cut(s) 304, 754
VspI ATTAAT 1 cut(s) 672
XapI RAATTY 3 cut(s) 355, 565, 571
XceI RCATGY 2 cut(s) 214, 260
XmiI GTMKAC 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.