Rw5G027670

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000352
Physical Location & Seq
Forward (+)
41080266 .. 41081214
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G027670.1

Sequence Viewer

Length: 765 bp
ATGGCCGACTCTAAATCTACTGTTAGCCTGAAGCTACTCATCGATTCAAAGCGTCAAAAGGTTCTGTTTGCCGAAGCGGGTAAGGAATTTGTGGATTTTCTCTTCACCCTTCTCTCTTTGCCTGTTGGGACTGTCATTAGGCTTCTTTCAAAGGATGGCATGGTTGGTAGCTTTGGTATACTGTATGAGAGTGTTGAAAATCTAGATTTTACATATATGCAACCCCAACTAAACAAGGATATCCTGCTCAAACCCAAGGCACCTGTTGCTGGACCTAATATCCTCGGTTTGTTGGCCAACGTCGACGAACCGGCTGCTATAAATAAGGTGTTCTACATGTGTCCAAATAGTAGTAGTATTAAGAGGAGCTTTAGCAATAGCTGCGAAGACATCTCTTCAGGTACTGCCCACCTTTATGTGACTGAAGATCCTAACGAACAATGTCCAAAGTGCAATCACCATATGTCTTCTCAGGCGACTTATGTTGGTCAACCAAAGACCACGGTAGCAGCTTCTGGCTTCGGTGCAGCAGGATATGTCAAAGGCCTAGTTACGTACATGATAATGGACGATCTGGAGGTGAAGCCTATGTCCACTATTTCAAGCATAAATCTGCTCAACAGATTCAATGTTAAGGATGTTGGCACCCTCGAAGAGAAGGTTGTAGATCTTGGCATGAATGAGGGTGTGAAACTGCTGAAAGAATCCCTACAATCCAAAGTAGTTCTCACAAATGTGTTCCTGGGGAAGAAAGCTGCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

254

Amino Acids

27.57

Weight (kDa)

6.83

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF674 PF05056 5 - 251 4.5e-49 Protein of unknown function (DUF674)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 259, 644
AccI GTMKAC 2 cut(s) 178, 303
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 422
AcoI YGGCCR 2 cut(s) 3, 294
AcsI RAATTY 1 cut(s) 86
AcuI CTGAAG 3 cut(s) 50, 381, 444
AfaI GTAC 2 cut(s) 403, 557
AfiI CCNNNNNNNGG 1 cut(s) 269
AflIII ACRYGT 1 cut(s) 336
AgsI TTSAA 5 cut(s) 48, 150, 197, 603, 628
AjnI CCWGG 1 cut(s) 741
AleI CACNNNNGTG 1 cut(s) 734
AluBI AGCT 6 cut(s) 34, 171, 369, 381, 512, 755
AluI AGCT 6 cut(s) 34, 171, 369, 381, 512, 755
AlwI GGATC 1 cut(s) 422
AlwNI CAGNNNCTG 2 cut(s) 404, 515
AoxI GGCC 3 cut(s) 3, 294, 544
ApeKI GCWGC 6 cut(s) 314, 381, 509, 527, 755, 758
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 97, 449, 592
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 2 cut(s) 259, 644
BbsI GAAGAC 2 cut(s) 393, 459
BbvI GCAGC 6 cut(s) 301, 368, 521, 539, 742, 745
BccI CCATC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BciT130I CCWGG 1 cut(s) 743
BfaI CTAG 2 cut(s) 203, 548
BglII AGATCT 1 cut(s) 667
BisI GCNGC 6 cut(s) 315, 382, 510, 528, 756, 759
BlsI GCNGC 6 cut(s) 316, 383, 511, 529, 757, 760
Bme1390I CCNGG 1 cut(s) 743
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 261, 646
BmrFI CCNGG 1 cut(s) 743
BpiI GAAGAC 2 cut(s) 393, 459
BpmI CTGGAG 1 cut(s) 596
Bsa29I ATCGAT 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 555
BsaJI CCNNGG 4 cut(s) 255, 283, 501, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 269
Bse118I RCCGGY 1 cut(s) 310
BseBI CCWGG 1 cut(s) 743
BseCI ATCGAT 1 cut(s) 42
BseDI CCNNGG 4 cut(s) 255, 283, 501, 742
BseGI GGATG 2 cut(s) 160, 643
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 485
BseRI GAGGAG 1 cut(s) 379
BseXI GCAGC 6 cut(s) 301, 368, 521, 539, 742, 745
BsgI GTGCAG 1 cut(s) 546
BshFI GGCC 3 cut(s) 5, 296, 546
BshNI GGYRCC 2 cut(s) 259, 644
BshVI ATCGAT 1 cut(s) 42
BsiSI CCGG 1 cut(s) 311
BslFI GGGAC 1 cut(s) 142
BslI CCNNNNNNNGG 1 cut(s) 269
BsmFI GGGAC 1 cut(s) 142
BsnI GGCC 3 cut(s) 5, 296, 546
Bsp143I GATC 3 cut(s) 427, 571, 667
BspACI CCGC 1 cut(s) 77
BspANI GGCC 3 cut(s) 5, 296, 546
BspCNI CTCAG 1 cut(s) 484
BspDI ATCGAT 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 261, 646
BspPI GGATC 1 cut(s) 422
BspT107I GGYRCC 2 cut(s) 259, 644
BsrFI RCCGGY 1 cut(s) 310
BssAI RCCGGY 1 cut(s) 310
BssECI CCNNGG 4 cut(s) 255, 283, 501, 742
BssMI GATC 3 cut(s) 427, 571, 667
BssNAI GTATAC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 255
Bst1107I GTATAC 1 cut(s) 179
Bst2UI CCWGG 1 cut(s) 743
Bst4CI ACNGT 4 cut(s) 22, 133, 183, 505
Bst6I CTCTTC 3 cut(s) 107, 400, 648
BstAPI GCANNNNNTGC 2 cut(s) 266, 381
BstBAI YACGTR 1 cut(s) 555
BstDEI CTNAG 1 cut(s) 471
BstDSI CCRYGG 1 cut(s) 501
BstF5I GGATG 2 cut(s) 160, 643
BstKTI GATC 3 cut(s) 430, 574, 670
BstMBI GATC 3 cut(s) 427, 571, 667
BstMWI GCNNNNNNNGC 2 cut(s) 266, 381
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 340
BstSCI CCNGG 1 cut(s) 741
BstSNI TACGTA 1 cut(s) 555
BstV1I GCAGC 6 cut(s) 301, 368, 521, 539, 742, 745
BstV2I GAAGAC 2 cut(s) 393, 459
BstX2I RGATCY 2 cut(s) 427, 667
BstYI RGATCY 2 cut(s) 427, 667
BstZ17I GTATAC 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 42
BsuRI GGCC 3 cut(s) 5, 296, 546
BsuTUI ATCGAT 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 501
BtsCI GGATG 2 cut(s) 160, 643
CaiI CAGNNNCTG 2 cut(s) 404, 515
Cfr10I RCCGGY 1 cut(s) 310
Cfr13I GGNCC 1 cut(s) 272
ClaI ATCGAT 1 cut(s) 42
CseI GACGC 1 cut(s) 41
Csp6I GTAC 2 cut(s) 402, 556
CviAII CATG 5 cut(s) 160, 337, 559, 676, 762
CviQI GTAC 2 cut(s) 402, 556
DdeI CTNAG 1 cut(s) 471
DpnI GATC 3 cut(s) 429, 573, 669
DpnII GATC 3 cut(s) 427, 571, 667
EaeI YGGCCR 2 cut(s) 3, 294
Eam1104I CTCTTC 3 cut(s) 107, 400, 648
EarI CTCTTC 3 cut(s) 107, 400, 648
Eco105I TACGTA 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 255
Eco147I AGGCCT 1 cut(s) 546
Eco32I GATATC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 272
Eco57I CTGAAG 3 cut(s) 50, 381, 444
EcoRII CCWGG 1 cut(s) 741
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 5 cut(s) 163, 340, 562, 679, 765
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FaqI GGGAC 1 cut(s) 142
FatI CATG 5 cut(s) 159, 336, 558, 675, 761
FauI CCCGC 1 cut(s) 70
FauNDI CATATG 1 cut(s) 462
FblI GTMKAC 2 cut(s) 178, 303
Fnu4HI GCNGC 6 cut(s) 315, 382, 510, 528, 756, 759
FokI GGATG 2 cut(s) 167, 650
Fsp4HI GCNGC 6 cut(s) 315, 382, 510, 528, 756, 759
FspBI CTAG 2 cut(s) 203, 548
GluI GCNGC 6 cut(s) 315, 382, 510, 528, 756, 759
GsuI CTGGAG 1 cut(s) 596
HaeIII GGCC 3 cut(s) 5, 296, 546
HapII CCGG 1 cut(s) 311
HgaI GACGC 1 cut(s) 41
Hin1II CATG 5 cut(s) 163, 340, 562, 679, 765
HincII GTYRAC 2 cut(s) 304, 491
HindII GTYRAC 2 cut(s) 304, 491
HinfI GANTC 4 cut(s) 8, 44, 624, 704
HpaII CCGG 1 cut(s) 311
HphI GGTGA 3 cut(s) 97, 449, 592
Hpy166II GTNNAC 4 cut(s) 179, 304, 491, 594
Hpy188III TCNNGA 2 cut(s) 203, 575
Hpy8I GTNNAC 4 cut(s) 179, 304, 491, 594
Hpy99I CGWCG 2 cut(s) 305, 308
HpyAV CCTTC 2 cut(s) 119, 652
HpyCH4III ACNGT 4 cut(s) 22, 133, 183, 505
HpyCH4IV ACGT 2 cut(s) 300, 554
HpyCH4V TGCA 4 cut(s) 220, 453, 527, 761
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 381
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 2 cut(s) 300, 554
Hsp92II CATG 5 cut(s) 163, 340, 562, 679, 765
Kzo9I GATC 3 cut(s) 427, 571, 667
LmnI GCTCC 1 cut(s) 366
Lsp1109I GCAGC 6 cut(s) 301, 368, 521, 539, 742, 745
MaeI CTAG 2 cut(s) 203, 548
MaeII ACGT 2 cut(s) 300, 554
MaeIII GTNAC 2 cut(s) 418, 550
MalI GATC 3 cut(s) 429, 573, 669
MboI GATC 3 cut(s) 427, 571, 667
MboII GAAGA 7 cut(s) 94, 387, 398, 437, 459, 665, 760
MflI RGATCY 2 cut(s) 427, 667
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 1 cut(s) 86
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 1 cut(s) 2
MnlI CCTC 5 cut(s) 293, 357, 571, 659, 676
Mox20I TGGCCA 1 cut(s) 296
MscI TGGCCA 1 cut(s) 296
MseI TTAA 2 cut(s) 360, 633
MslI CAYNNNNRTG 3 cut(s) 414, 563, 734
Msp20I TGGCCA 1 cut(s) 296
MspI CCGG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 743
MvaI CCWGG 1 cut(s) 743
MwoI GCNNNNNNNGC 2 cut(s) 266, 381
NdeI CATATG 1 cut(s) 462
NdeII GATC 3 cut(s) 427, 571, 667
NlaIII CATG 5 cut(s) 163, 340, 562, 679, 765
NlaIV GGNNCC 2 cut(s) 261, 646
NmuCI GTSAC 1 cut(s) 418
NspI RCATGY 1 cut(s) 340
OliI CACNNNNGTG 1 cut(s) 734
PceI AGGCCT 1 cut(s) 546
PciI ACATGT 1 cut(s) 336
PfeI GAWTC 3 cut(s) 44, 624, 704
PkrI GCNGC 6 cut(s) 316, 383, 511, 529, 757, 760
PleI GAGTC 1 cut(s) 2
PpsI GAGTC 1 cut(s) 2
Ppu21I YACGTR 1 cut(s) 555
PscI ACATGT 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 741
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 2 cut(s) 261, 646
PspPI GGNCC 1 cut(s) 272
PstNI CAGNNNCTG 2 cut(s) 404, 515
PsuI RGATCY 2 cut(s) 427, 667
RsaI GTAC 2 cut(s) 403, 557
RsaNI GTAC 2 cut(s) 402, 556
RseI CAYNNNNRTG 3 cut(s) 414, 563, 734
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 360, 633
SatI GCNGC 6 cut(s) 315, 382, 510, 528, 756, 759
Sau3AI GATC 3 cut(s) 427, 571, 667
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 2
ScrFI CCNGG 1 cut(s) 743
SgrDI CGTCGACG 1 cut(s) 302
SinI GGWCC 1 cut(s) 272
SmiMI CAYNNNNRTG 3 cut(s) 414, 563, 734
SnaBI TACGTA 1 cut(s) 555
Sse9I AATT 1 cut(s) 86
SseBI AGGCCT 1 cut(s) 546
SsiI CCGC 1 cut(s) 77
SspMI CTAG 2 cut(s) 203, 548
StuI AGGCCT 1 cut(s) 546
StyD4I CCNGG 1 cut(s) 741
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 4 cut(s) 22, 133, 183, 505
TaiI ACGT 2 cut(s) 303, 557
TaqI TCGA 3 cut(s) 42, 303, 651
TasI AATT 1 cut(s) 86
TfiI GAWTC 3 cut(s) 44, 624, 704
Tru1I TTAA 2 cut(s) 360, 633
Tru9I TTAA 2 cut(s) 360, 633
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 6 cut(s) 314, 381, 509, 527, 755, 758
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 86
XbaI TCTAGA 1 cut(s) 202
XceI RCATGY 1 cut(s) 340
XmiI GTMKAC 2 cut(s) 178, 303
XspI CTAG 2 cut(s) 203, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.