Rmu_sc0004288.1_g000006

Protein of unknown function (DUF674)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004288.1
OG0000352
Physical Location & Seq
Reverse (-)
24348 .. 24986
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004288.1_g000006.1.cds

Sequence Viewer

Length: 639 bp
atggagttgggcgataccgttagtctgaagctcctcatcgatgtgaagcttcaaaaggttctctttgctgaagccggtaaggattttgtggattttcttttcactcttctctctttgcctattggtactgtcattaggcttctctccaagggtgggatggttggtagctttggtaaactgtatgagagtattgaaaatcttgattatacatatatccaacccacactaaacaaggatatcctgctcaaacccaaggcaccagttgatggacctaatatcctcaagttgacgaacaatgttgaatcaagtgctcgaaaggagctgtatttgtgtagtcatccaaataattactctaaatcccacccgtacgtgactgaaaaccccaatgaaaaatgtccatcgtgttcataccccatgaacctccgaactacttgtgtcggtcagccgactaccacgaaagcaacttctggatatgtcaaagacgttgtgacatacatgataatggatgatctggaggtgaagcccatgtccaccatttcaagcatcactatgcttaacagattcaatatcaaggatgttggggcccttgaagagaaggttgttgaacttggcatggatgaggtaaaaatttctatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF674

Protein Analysis

212

Amino Acids

23.57

Weight (kDa)

5.77

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g24890 FvH4_7g21280 FvH4_7g21300 FvH4_7g21300 FvH4_7g21310 FvH4_7g21330 FvH4_7g21340 FvH4_7g21600 FvH4_7g21610 FvH4_7g21630
malus_domestica MD07G1190400.v1.1 MD07G1190600.v1.1
prunus_persica Prupe.2G228600_v2.0.a1 Prupe.6G198200_v2.0.a1
pyrus_communis pycom07g18010
rosa_chinensis RchiOBHm_Chr1g0365711 RchiOBHm_Chr1g0365721 RchiOBHm_Chr1g0365731 RchiOBHm_Chr1g0365991 RchiOBHm_Chr5g0044511 RchiOBHm_Chr6g0247041 RchiOBHm_Chr6g0247081
rosa_laevigata RLG00000015223 RLG00000027405 RLG00000027406 RLG00000027407 RLG00000027408 RLG00000027409 RLG00000027411 RLG00000027413 RLG00000034277
rosa_multiflora Rmu_co8279495.1_g000001 Rmu_co8358963.1_g000001 Rmu_co8520123.1_g000003 Rmu_sc0002093.1_g000019 Rmu_sc0002093.1_g000024 Rmu_sc0002093.1_g000025 Rmu_sc0002093.1_g000029 Rmu_sc0002476.1_g000002 Rmu_sc0002476.1_g000021 Rmu_sc0003466.1_g000011 Rmu_sc0004288.1_g000006 Rmu_sc0004288.1_g000007 Rmu_sc0004311.1_g000022 Rmu_sc0004311.1_g000023 Rmu_sc0004311.1_g000026 Rmu_sc0004311.1_g000033 Rmu_sc0004577.1_g000008 Rmu_sc0004645.1_g000005 Rmu_sc0004645.1_g000006 Rmu_sc0006406.1_g000011 Rmu_sc0006406.1_g000012 Rmu_sc0009967.1_g000002 Rmu_sc0011598.1_g000003 Rmu_ssc0000151.1_g000015
rosa_roxburghii Rroxscaffold_1G00036500 Rroxscaffold_3G00276050 Rroxscaffold_4G00290950 Rroxscaffold_4G00290960 Rroxscaffold_4G00290970 Rroxscaffold_4G00290980 Rroxscaffold_4G00291000 Rroxscaffold_4G00291030 Rroxscaffold_4G00291060
rosa_rugosa Rorug01G0322900 Rorug01G0323000 Rorug01G0323100 Rorug01G0323200 Rorug01G0323300 Rorug01G0323400 Rorug01G0323500 Rorug01G0323600 Rorug05G0214700 Rorug05G0522100
rosa_samantha Rh1AG332000 Rh1AG332200 Rh1AG332300 Rh1AG334700 Rh1AG334800 Rh1AG335200 Rh1CG309900 Rh1CG310000 Rh1CG310100 Rh1DG325100 Rh1DG325300 Rh1DG325500 Rh5AG299000 Rh5BG306500 Rh5DG315800 Rh6AG037200 Rh6BG031900 Rh6BG032000 Rh6CG032300 Rh6CG032400 Rh6CG033200 Rh6DG030900
rosa_wichuraiana Rw0G001530 Rw1G019070 Rw1G029470 Rw1G029480 Rw1G029490 Rw1G029500 Rw1G029510 Rw1G029700 Rw5G027640 Rw5G027670 Rw6G003160 Rw6G003190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 256
AccB7I CCANNNNNTGG 1 cut(s) 266
AcsI RAATTY 1 cut(s) 627
AcuI CTGAAG 2 cut(s) 47, 90
AfaI GTAC 2 cut(s) 127, 368
AfiI CCNNNNNNNGG 2 cut(s) 153, 266
AgsI TTSAA 7 cut(s) 53, 194, 302, 540, 565, 590, 605
AluBI AGCT 4 cut(s) 31, 49, 168, 322
AluI AGCT 4 cut(s) 31, 49, 168, 322
Alw21I GWGCWC 1 cut(s) 313
AoxI GGCC 1 cut(s) 582
ApaI GGGCCC 1 cut(s) 586
ApoI RAATTY 1 cut(s) 627
AspS9I GGNCC 3 cut(s) 269, 582, 583
AsuHPI GGTGA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 586
Bbv12I GWGCWC 1 cut(s) 313
BccI CCATC 3 cut(s) 151, 260, 406
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 3 cut(s) 269, 582, 583
BmiI GGNNCC 3 cut(s) 258, 583, 584
BmsI GCATC 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 533
BpuEI CTTGAG 1 cut(s) 266
Bsa29I ATCGAT 1 cut(s) 39
BsaAI YACGTR 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 147, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 266
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 147, 252
BseGI GGATG 5 cut(s) 162, 337, 511, 580, 622
BseLI CCNNNNNNNGG 2 cut(s) 153, 266
BseNI ACTGG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 586
BshFI GGCC 1 cut(s) 584
BshNI GGYRCC 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 313
BsiSI CCGG 1 cut(s) 75
BsiWI CGTACG 1 cut(s) 366
BslI CCNNNNNNNGG 2 cut(s) 153, 266
BsnI GGCC 1 cut(s) 584
Bsp120I GGGCCC 1 cut(s) 582
Bsp1286I GDGCHC 2 cut(s) 313, 586
Bsp143I GATC 1 cut(s) 508
BspANI GGCC 1 cut(s) 584
BspDI ATCGAT 1 cut(s) 39
BspLI GGNNCC 3 cut(s) 258, 583, 584
BspT107I GGYRCC 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 147, 252
BssMI GATC 1 cut(s) 508
BssT1I CCWWGG 2 cut(s) 147, 252
Bst4CI ACNGT 3 cut(s) 19, 130, 180
Bst6I CTCTTC 2 cut(s) 111, 585
BstBAI YACGTR 1 cut(s) 370
BstF5I GGATG 5 cut(s) 162, 337, 511, 580, 622
BstKTI GATC 1 cut(s) 511
BstMBI GATC 1 cut(s) 508
BstSLI GKGCMC 1 cut(s) 586
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 1 cut(s) 584
BsuTUI ATCGAT 1 cut(s) 39
BtsCI GGATG 5 cut(s) 162, 337, 511, 580, 622
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 269, 582, 583
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 2 cut(s) 126, 367
CviAII CATG 4 cut(s) 415, 496, 526, 613
CviJI RGCY 9 cut(s) 31, 49, 74, 139, 168, 322, 445, 523, 584
CviKI_1 RGCY 9 cut(s) 31, 49, 74, 139, 168, 322, 445, 523, 584
CviQI GTAC 2 cut(s) 126, 367
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
Eam1104I CTCTTC 2 cut(s) 111, 585
EarI CTCTTC 2 cut(s) 111, 585
Eco130I CCWWGG 2 cut(s) 147, 252
Eco24I GRGCYC 1 cut(s) 586
Eco32I GATATC 1 cut(s) 238
Eco47I GGWCC 1 cut(s) 269
Eco57I CTGAAG 2 cut(s) 47, 90
EcoO109I RGGNCCY 2 cut(s) 582, 583
EcoRV GATATC 1 cut(s) 238
EcoT14I CCWWGG 2 cut(s) 147, 252
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 147, 252
FaeI CATG 4 cut(s) 418, 499, 529, 616
FalI AAGNNNNNCTT 2 cut(s) 47, 79
FatI CATG 4 cut(s) 414, 495, 525, 612
FokI GGATG 5 cut(s) 169, 324, 518, 587, 629
FriOI GRGCYC 1 cut(s) 586
GsuI CTGGAG 1 cut(s) 533
HaeIII GGCC 1 cut(s) 584
HapII CCGG 1 cut(s) 75
Hin1II CATG 4 cut(s) 418, 499, 529, 616
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 302, 561
HpaII CCGG 1 cut(s) 75
HphI GGTGA 1 cut(s) 529
Hpy166II GTNNAC 3 cut(s) 176, 288, 531
Hpy188I TCNGA 2 cut(s) 27, 425
Hpy188III TCNNGA 3 cut(s) 200, 468, 512
Hpy8I GTNNAC 3 cut(s) 176, 288, 531
HpyAV CCTTC 1 cut(s) 589
HpyCH4III ACNGT 3 cut(s) 19, 130, 180
HpyCH4IV ACGT 2 cut(s) 369, 483
HpySE526I ACGT 2 cut(s) 369, 483
Hsp92II CATG 4 cut(s) 418, 499, 529, 616
Kzo9I GATC 1 cut(s) 508
LmnI GCTCC 2 cut(s) 36, 319
LpnPI CCDG 5 cut(s) 88, 254, 273, 453, 497
LweI GCATC 1 cut(s) 552
MaeII ACGT 2 cut(s) 369, 483
MaeIII GTNAC 2 cut(s) 370, 487
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MboII GAAGA 2 cut(s) 98, 602
MhlI GDGCHC 2 cut(s) 313, 586
MluCI AATT 2 cut(s) 346, 627
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 5 cut(s) 44, 290, 431, 508, 613
MseI TTAA 1 cut(s) 555
MslI CAYNNNNRTG 3 cut(s) 41, 500, 548
MspI CCGG 1 cut(s) 75
NdeII GATC 1 cut(s) 508
NlaIII CATG 4 cut(s) 418, 499, 529, 616
NlaIV GGNNCC 3 cut(s) 258, 583, 584
NmuCI GTSAC 2 cut(s) 370, 487
PfeI GAWTC 2 cut(s) 302, 561
Pfl23II CGTACG 1 cut(s) 366
PflMI CCANNNNNTGG 1 cut(s) 266
Ppu21I YACGTR 1 cut(s) 370
PspLI CGTACG 1 cut(s) 366
PspN4I GGNNCC 3 cut(s) 258, 583, 584
PspOMI GGGCCC 1 cut(s) 582
PspPI GGNCC 3 cut(s) 269, 582, 583
RsaI GTAC 2 cut(s) 127, 368
RsaNI GTAC 2 cut(s) 126, 367
RseI CAYNNNNRTG 3 cut(s) 41, 500, 548
SaqAI TTAA 1 cut(s) 555
Sau3AI GATC 1 cut(s) 508
Sau96I GGNCC 3 cut(s) 269, 582, 583
SduI GDGCHC 2 cut(s) 313, 586
SfaNI GCATC 1 cut(s) 552
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 3 cut(s) 41, 500, 548
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 346, 627
StyI CCWWGG 2 cut(s) 147, 252
TaaI ACNGT 3 cut(s) 19, 130, 180
TaiI ACGT 2 cut(s) 372, 486
TaqI TCGA 2 cut(s) 39, 313
TaqII GACCGA 1 cut(s) 428
TasI AATT 2 cut(s) 346, 627
TfiI GAWTC 2 cut(s) 302, 561
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TseFI GTSAC 2 cut(s) 370, 487
Tsp45I GTSAC 2 cut(s) 370, 487
TspDTI ATGAA 3 cut(s) 396, 402, 431
Van91I CCANNNNNTGG 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 269
XapI RAATTY 1 cut(s) 627
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.